Wall clock time and date at job start Mon Mar 30 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47043 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47268 * 185.09855 * 4 3 2 6 6 C 1.46901 * 111.00005 * 288.78103 * 5 4 3 7 7 C 1.50706 * 109.46652 * 299.99417 * 6 5 4 8 8 H 1.07994 * 120.00188 * 358.43142 * 7 6 5 9 9 C 1.37884 * 119.99765 * 178.42505 * 7 6 5 10 10 N 1.31510 * 119.99799 * 184.22652 * 9 7 6 11 11 Si 1.86803 * 119.99680 * 4.22715 * 9 7 6 12 12 H 1.48496 * 109.47174 * 94.17734 * 11 9 7 13 13 H 1.48506 * 109.46603 * 214.17336 * 11 9 7 14 14 H 1.48500 * 109.47237 * 334.17173 * 11 9 7 15 15 C 1.46897 * 111.00104 * 164.82473 * 5 4 3 16 16 C 1.50699 * 109.47078 * 200.03107 * 15 5 4 17 17 C 1.38170 * 120.02508 * 261.08088 * 16 15 5 18 18 C 1.50699 * 119.97533 * 359.97438 * 17 16 15 19 19 C 1.38250 * 120.05450 * 179.72188 * 17 16 15 20 20 C 1.38294 * 120.10879 * 0.51730 * 19 17 16 21 21 C 1.38122 * 120.05648 * 359.48416 * 20 19 17 22 22 C 1.38706 * 120.02904 * 81.06339 * 16 15 5 23 23 O 1.35895 * 120.05846 * 0.03930 * 22 16 15 24 24 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 299.99118 * 1 2 3 26 26 H 1.09000 * 109.47428 * 59.99292 * 1 2 3 27 27 H 1.09009 * 109.46525 * 240.00458 * 2 1 3 28 28 H 1.08994 * 109.46997 * 120.00821 * 2 1 3 29 29 H 1.09004 * 109.46450 * 60.00482 * 3 2 1 30 30 H 1.09000 * 109.47586 * 300.00611 * 3 2 1 31 31 H 1.09005 * 109.46995 * 65.10162 * 4 3 2 32 32 H 1.08998 * 109.47196 * 305.09969 * 4 3 2 33 33 H 1.08999 * 109.47387 * 59.99623 * 6 5 4 34 34 H 1.08998 * 109.47360 * 179.97438 * 6 5 4 35 35 H 0.97007 * 119.99619 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47018 * 80.02896 * 15 5 4 37 37 H 1.09002 * 109.47250 * 320.03114 * 15 5 4 38 38 H 1.08996 * 109.47293 * 84.01382 * 18 17 16 39 39 H 1.09000 * 109.46995 * 204.01645 * 18 17 16 40 40 H 1.09005 * 109.46871 * 324.01155 * 18 17 16 41 41 H 1.07989 * 119.94587 * 180.25650 * 19 17 16 42 42 H 1.07999 * 119.97027 * 179.76633 * 20 19 17 43 43 H 1.07994 * 120.02842 * 180.23640 * 21 20 19 44 44 H 0.96697 * 114.00246 * 269.98381 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0596 2.8220 0.1237 6 6 3.8193 3.5782 -1.1126 7 6 4.5376 2.9108 -2.2571 8 1 5.1354 2.0292 -2.0790 9 6 4.4314 3.4258 -3.5318 10 7 4.9892 2.7974 -4.5434 11 14 3.4953 5.0162 -3.8215 12 1 4.4431 6.1591 -3.8019 13 1 2.8173 4.9580 -5.1415 14 1 2.4812 5.1956 -2.7516 15 6 5.4828 2.8450 0.4868 16 6 5.8293 4.1882 1.0757 17 6 6.4322 5.1524 0.2909 18 6 6.7438 4.8603 -1.1543 19 6 6.7451 6.3869 0.8289 20 6 6.4654 6.6562 2.1562 21 6 5.8628 5.6957 2.9449 22 6 5.5429 4.4578 2.4058 23 8 4.9503 3.5110 3.1799 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 1.0097 -0.9313 32 1 3.9329 0.8517 0.8417 33 1 2.7497 3.6042 -1.3206 34 1 4.1909 4.5960 -0.9940 35 1 4.9141 3.1595 -5.4402 36 1 6.0877 2.6715 -0.4033 37 1 5.6834 2.0641 1.2203 38 1 5.8583 5.0466 -1.7618 39 1 7.5562 5.5057 -1.4885 40 1 7.0426 3.8171 -1.2578 41 1 7.2126 7.1407 0.2129 42 1 6.7142 7.6200 2.5752 43 1 5.6411 5.9079 3.9803 44 1 3.9839 3.5438 3.1708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237489921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:02 Heat of formation + Delta-G solvation = -30.223394 kcal Electronic energy + Delta-G solvation = -22631.145637 eV Core-core repulsion = 19548.049805 eV Total energy + Delta-G solvation = -3083.095832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72229 -37.18786 -36.38826 -34.37127 -32.49164 -32.06805 -30.17118 -28.57394 -27.52395 -26.11013 -24.54343 -23.00299 -21.66484 -21.05245 -20.17709 -19.29635 -17.51519 -17.04740 -15.70695 -15.63849 -15.24255 -14.84955 -14.55734 -14.24872 -13.89927 -13.55299 -13.11803 -12.85147 -12.63308 -12.51525 -12.38689 -12.17868 -11.93175 -11.65185 -11.50525 -11.17620 -10.90536 -10.84050 -10.78517 -10.73109 -10.48812 -10.43565 -10.21257 -9.99977 -9.84452 -9.73979 -9.53824 -8.60657 -8.18491 -8.13077 -7.18025 -6.14326 -4.11315 1.64993 1.72547 3.21450 3.31629 3.35939 3.96558 4.35250 4.67303 4.93521 5.19816 5.22950 5.25720 5.34229 5.41041 5.51330 5.53970 5.63583 5.83487 5.87380 6.02206 6.05187 6.11398 6.15241 6.19862 6.26795 6.33674 6.38997 6.45534 6.49443 6.55606 6.67991 6.72858 6.81012 6.87038 6.91695 6.95831 7.02930 7.10660 7.18639 7.32298 7.56845 8.05706 8.07017 8.12265 8.41989 8.88773 9.49436 10.98370 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.008239 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.036239 B = 3397.470004 C = 5213.797896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.108 4.108 4 C 0.058 3.942 5 N -0.529 5.529 6 C 0.149 3.851 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.077 3.923 10 N -0.896 5.896 11 Si 0.863 3.137 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.263 1.263 15 C 0.090 3.910 16 C -0.086 4.086 17 C -0.050 4.050 18 C -0.118 4.118 19 C -0.140 4.140 20 C -0.111 4.111 21 C -0.165 4.165 22 C 0.123 3.877 23 O -0.498 6.498 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 2.461 11.394 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.070 4.070 5 N -0.252 5.252 6 C 0.022 3.978 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.126 4.126 10 N -0.534 5.534 11 Si 0.690 3.310 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.187 1.187 15 C -0.037 4.037 16 C -0.087 4.087 17 C -0.051 4.051 18 C -0.174 4.174 19 C -0.158 4.158 20 C -0.129 4.129 21 C -0.184 4.184 22 C 0.078 3.922 23 O -0.308 6.308 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.481 2.513 11.697 12.055 hybrid contribution -0.533 0.712 -1.109 1.421 sum -2.014 3.224 10.588 11.250 Atomic orbital electron populations 1.21752 0.96487 1.00824 1.01581 1.21480 0.95226 0.97763 1.01559 1.21492 0.95777 0.95376 1.01943 1.22007 0.94563 0.90041 1.00368 1.62412 1.14541 1.13020 1.35222 1.20330 0.96737 0.94112 0.86590 1.21567 1.30801 1.13756 0.91729 0.90711 1.24873 0.94909 0.96708 0.96073 1.69921 1.44854 1.39032 0.99603 0.87056 0.81108 0.84798 0.78019 1.20112 1.21330 1.18697 1.20928 0.91157 0.92319 0.99296 1.20092 0.99224 0.97157 0.92242 1.19934 0.95870 0.92713 0.96561 1.21064 1.02387 1.02724 0.91185 1.21012 1.02656 0.96814 0.95339 1.20849 0.99482 0.98607 0.93976 1.21244 1.03743 0.93216 1.00165 1.18234 0.97299 0.87665 0.89005 1.84679 1.24602 1.53811 1.67697 0.93385 0.93118 0.92838 0.92093 0.92641 0.92473 0.91777 0.92816 0.93106 0.95486 0.95598 0.92749 0.91360 0.91675 0.88984 0.93152 0.90255 0.86422 0.86473 0.86333 0.75456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.11 -1.78 5.14 -26.73 -0.14 -1.92 16 4 C 0.06 1.07 4.79 -3.83 -0.02 1.05 16 5 N -0.53 -10.35 4.59 -237.52 -1.09 -11.44 16 6 C 0.15 3.36 3.42 -4.97 -0.02 3.34 16 7 C -0.54 -13.74 5.98 -34.43 -0.21 -13.94 16 8 H 0.07 2.10 6.30 -52.49 -0.33 1.76 16 9 C 0.08 2.07 5.26 -17.82 -0.09 1.98 16 10 N -0.90 -25.87 13.96 55.43 0.77 -25.10 16 11 Si 0.86 20.56 26.77 -169.99 -4.55 16.01 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.26 -6.11 6.47 56.52 0.37 -5.74 16 15 C 0.09 1.73 4.41 -4.98 -0.02 1.71 16 16 C -0.09 -1.56 4.97 -104.47 -0.52 -2.08 16 17 C -0.05 -0.90 5.27 -104.64 -0.55 -1.45 16 18 C -0.12 -2.24 8.04 36.01 0.29 -1.95 16 19 C -0.14 -2.19 9.67 -39.56 -0.38 -2.57 16 20 C -0.11 -1.56 10.04 -39.60 -0.40 -1.96 16 21 C -0.17 -2.43 9.99 -39.43 -0.39 -2.82 16 22 C 0.12 2.03 6.68 -39.21 -0.26 1.77 16 23 O -0.50 -7.58 12.72 -19.41 -0.25 -7.82 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 31 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 32 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 33 H 0.03 0.64 5.91 -51.93 -0.31 0.33 16 34 H 0.03 0.61 4.73 -51.93 -0.25 0.36 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 1.45 4.00 -51.93 -0.21 1.24 16 37 H 0.06 1.20 7.33 -51.93 -0.38 0.82 16 38 H 0.09 1.99 4.64 -51.93 -0.24 1.75 16 39 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.08 1.60 6.06 -51.93 -0.31 1.29 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.39 4.73 9.06 45.56 0.41 5.14 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -28.13 336.50 -8.64 -36.76 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.09 Total: 8.72 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.50 Total: -22.20 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.32 Total: -36.54 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.25 Total: -7.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.55 Total: 16.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.13 -8.64 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237489921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.538 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds