Wall clock time and date at job start Mon Mar 30 2020 01:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47043 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47268 * 185.09855 * 4 3 2 6 6 C 1.46901 * 111.00005 * 288.78103 * 5 4 3 7 7 C 1.50706 * 109.46652 * 299.99417 * 6 5 4 8 8 H 1.07994 * 120.00188 * 358.43142 * 7 6 5 9 9 C 1.37884 * 119.99765 * 178.42505 * 7 6 5 10 10 N 1.31510 * 119.99799 * 184.22652 * 9 7 6 11 11 Si 1.86803 * 119.99680 * 4.22715 * 9 7 6 12 12 H 1.48496 * 109.47174 * 94.17734 * 11 9 7 13 13 H 1.48506 * 109.46603 * 214.17336 * 11 9 7 14 14 H 1.48500 * 109.47237 * 334.17173 * 11 9 7 15 15 C 1.46897 * 111.00104 * 164.82473 * 5 4 3 16 16 C 1.50699 * 109.47078 * 200.03107 * 15 5 4 17 17 C 1.38170 * 120.02508 * 261.08088 * 16 15 5 18 18 C 1.50699 * 119.97533 * 359.97438 * 17 16 15 19 19 C 1.38250 * 120.05450 * 179.72188 * 17 16 15 20 20 C 1.38294 * 120.10879 * 0.51730 * 19 17 16 21 21 C 1.38122 * 120.05648 * 359.48416 * 20 19 17 22 22 C 1.38706 * 120.02904 * 81.06339 * 16 15 5 23 23 O 1.35895 * 120.05846 * 0.03930 * 22 16 15 24 24 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 299.99118 * 1 2 3 26 26 H 1.09000 * 109.47428 * 59.99292 * 1 2 3 27 27 H 1.09009 * 109.46525 * 240.00458 * 2 1 3 28 28 H 1.08994 * 109.46997 * 120.00821 * 2 1 3 29 29 H 1.09004 * 109.46450 * 60.00482 * 3 2 1 30 30 H 1.09000 * 109.47586 * 300.00611 * 3 2 1 31 31 H 1.09005 * 109.46995 * 65.10162 * 4 3 2 32 32 H 1.08998 * 109.47196 * 305.09969 * 4 3 2 33 33 H 1.08999 * 109.47387 * 59.99623 * 6 5 4 34 34 H 1.08998 * 109.47360 * 179.97438 * 6 5 4 35 35 H 0.97007 * 119.99619 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47018 * 80.02896 * 15 5 4 37 37 H 1.09002 * 109.47250 * 320.03114 * 15 5 4 38 38 H 1.08996 * 109.47293 * 84.01382 * 18 17 16 39 39 H 1.09000 * 109.46995 * 204.01645 * 18 17 16 40 40 H 1.09005 * 109.46871 * 324.01155 * 18 17 16 41 41 H 1.07989 * 119.94587 * 180.25650 * 19 17 16 42 42 H 1.07999 * 119.97027 * 179.76633 * 20 19 17 43 43 H 1.07994 * 120.02842 * 180.23640 * 21 20 19 44 44 H 0.96697 * 114.00246 * 269.98381 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0596 2.8220 0.1237 6 6 3.8193 3.5782 -1.1126 7 6 4.5376 2.9108 -2.2571 8 1 5.1354 2.0292 -2.0790 9 6 4.4314 3.4258 -3.5318 10 7 4.9892 2.7974 -4.5434 11 14 3.4953 5.0162 -3.8215 12 1 4.4431 6.1591 -3.8019 13 1 2.8173 4.9580 -5.1415 14 1 2.4812 5.1956 -2.7516 15 6 5.4828 2.8450 0.4868 16 6 5.8293 4.1882 1.0757 17 6 6.4322 5.1524 0.2909 18 6 6.7438 4.8603 -1.1543 19 6 6.7451 6.3869 0.8289 20 6 6.4654 6.6562 2.1562 21 6 5.8628 5.6957 2.9449 22 6 5.5429 4.4578 2.4058 23 8 4.9503 3.5110 3.1799 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9562 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 1.0097 -0.9313 32 1 3.9329 0.8517 0.8417 33 1 2.7497 3.6042 -1.3206 34 1 4.1909 4.5960 -0.9940 35 1 4.9141 3.1595 -5.4402 36 1 6.0877 2.6715 -0.4033 37 1 5.6834 2.0641 1.2203 38 1 5.8583 5.0466 -1.7618 39 1 7.5562 5.5057 -1.4885 40 1 7.0426 3.8171 -1.2578 41 1 7.2126 7.1407 0.2129 42 1 6.7142 7.6200 2.5752 43 1 5.6411 5.9079 3.9803 44 1 3.9839 3.5438 3.1708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237489921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:01 Heat of formation + Delta-G solvation = -48.299388 kcal Electronic energy + Delta-G solvation = -22631.929470 eV Core-core repulsion = 19548.049805 eV Total energy + Delta-G solvation = -3083.879666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01855 -38.72945 -37.60049 -35.68078 -34.48671 -33.39568 -31.54090 -30.20990 -28.96321 -27.54818 -26.04656 -24.67854 -22.90839 -22.33683 -21.49013 -20.96956 -19.02741 -18.72671 -17.09617 -16.92442 -16.72757 -16.26305 -16.23269 -15.72607 -15.44099 -14.82630 -14.48796 -14.35878 -14.23736 -14.02024 -13.75686 -13.52412 -13.29009 -13.14789 -12.96339 -12.68653 -12.46354 -12.43263 -12.19236 -12.13615 -11.95782 -11.91316 -11.74784 -11.61128 -11.46791 -11.26602 -11.10629 -10.71180 -9.49103 -9.35464 -8.90814 -8.26564 -6.25844 0.43699 0.48137 1.30269 1.34609 1.43759 2.33677 2.74115 3.09810 3.39013 3.54111 3.98874 4.03175 4.10666 4.21134 4.22682 4.33943 4.39145 4.51524 4.55875 4.68584 4.76433 4.81167 4.83965 4.90123 4.97031 5.01569 5.06398 5.07538 5.14600 5.19040 5.21429 5.23090 5.36131 5.44496 5.47758 5.55264 5.56183 5.59559 5.65266 5.83069 6.06242 6.17241 6.41121 6.46766 6.77793 6.97238 7.37775 8.89592 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.008239 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.036239 B = 3397.470004 C = 5213.797896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.100 4.100 4 C 0.060 3.940 5 N -0.517 5.517 6 C 0.163 3.837 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.026 3.974 10 N -0.943 5.943 11 Si 0.918 3.082 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.251 1.251 15 C 0.099 3.901 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.108 4.108 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.160 4.160 22 C 0.117 3.883 23 O -0.502 6.502 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 4.431 14.193 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.068 4.068 5 N -0.240 5.240 6 C 0.036 3.964 7 C -0.558 4.558 8 H 0.055 0.945 9 C -0.172 4.172 10 N -0.584 5.584 11 Si 0.743 3.257 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.174 1.174 15 C -0.029 4.029 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.118 4.118 21 C -0.178 4.178 22 C 0.072 3.928 23 O -0.314 6.314 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.461 4.481 14.522 15.395 hybrid contribution -0.159 0.033 -1.876 1.883 sum -2.620 4.514 12.646 13.680 Atomic orbital electron populations 1.21722 0.94752 1.02037 1.01778 1.21454 0.96724 0.95887 1.01639 1.21430 0.93944 0.97090 1.01330 1.22049 0.96143 0.89398 0.99180 1.62468 1.15091 1.13336 1.33066 1.20081 0.95557 0.94147 0.86622 1.21613 1.29363 1.12054 0.92726 0.94517 1.25572 0.96037 0.99743 0.95878 1.70057 1.47222 1.41034 1.00084 0.86156 0.80245 0.81341 0.77939 1.19026 1.21476 1.17416 1.20801 0.90080 0.93894 0.98124 1.20066 1.01044 0.96576 0.93528 1.19910 0.97545 0.94159 0.95673 1.20867 1.01631 1.01526 0.92442 1.21269 1.02274 0.96021 0.96520 1.21276 0.97559 0.99930 0.93017 1.21584 1.02543 0.92195 1.01526 1.18347 0.97486 0.88639 0.88313 1.84645 1.25825 1.53798 1.67180 0.91707 0.91832 0.93732 0.93649 0.90950 0.90870 0.94380 0.96629 0.91155 0.96104 0.95609 0.92836 0.94450 0.91216 0.91868 0.91287 0.92873 0.84500 0.82672 0.83530 0.73915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.12 -3.24 5.93 30.59 0.18 -3.06 16 3 C -0.10 -3.26 5.14 30.59 0.16 -3.10 16 4 C 0.06 2.27 4.79 86.30 0.41 2.68 16 5 N -0.52 -20.52 4.59 -905.36 -4.15 -24.68 16 6 C 0.16 7.53 3.42 85.56 0.29 7.82 16 7 C -0.52 -27.77 5.98 25.60 0.15 -27.62 16 8 H 0.04 2.22 6.30 -2.91 -0.02 2.20 16 9 C 0.03 1.44 5.26 84.66 0.45 1.89 16 10 N -0.94 -56.99 13.96 21.45 0.30 -56.69 16 11 Si 0.92 43.04 26.77 68.60 1.84 44.88 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.25 -11.15 6.47 99.48 0.64 -10.51 16 15 C 0.10 3.87 4.41 85.56 0.38 4.25 16 16 C -0.11 -3.98 4.97 -19.77 -0.10 -4.08 16 17 C -0.07 -2.54 5.27 -19.88 -0.10 -2.65 16 18 C -0.11 -4.25 8.04 71.24 0.57 -3.67 16 19 C -0.14 -4.07 9.67 22.29 0.22 -3.86 16 20 C -0.10 -2.39 10.04 22.26 0.22 -2.16 16 21 C -0.16 -4.08 9.99 22.37 0.22 -3.85 16 22 C 0.12 3.61 6.68 22.51 0.15 3.76 16 23 O -0.50 -14.09 12.72 -92.37 -1.17 -15.26 16 24 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.04 1.43 6.95 -2.39 -0.02 1.41 16 31 H 0.02 0.70 6.21 -2.38 -0.01 0.68 16 32 H 0.07 2.35 7.70 -2.39 -0.02 2.33 16 33 H 0.02 1.00 5.91 -2.39 -0.01 0.98 16 34 H 0.03 1.21 4.73 -2.39 -0.01 1.20 16 35 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 36 H 0.04 1.70 4.00 -2.39 -0.01 1.69 16 37 H 0.07 2.61 7.33 -2.39 -0.02 2.59 16 38 H 0.06 2.81 4.64 -2.39 -0.01 2.80 16 39 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 40 H 0.05 2.31 6.06 -2.38 -0.01 2.29 16 41 H 0.14 3.30 8.06 -2.92 -0.02 3.28 16 42 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.40 8.71 9.06 -74.06 -0.67 8.04 16 Total: -1.00 -63.28 336.50 0.99 -62.30 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.26 Total: 25.73 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.92 Total: -36.28 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -3.85 Total: -81.37 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.17 Total: -15.26 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.84 Total: 44.88 kcal Total: -63.28 0.99 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237489921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.998 kcal (2) G-P(sol) polarization free energy of solvation -63.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds