Wall clock time and date at job start Mon Mar 30 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.53003 * 109.47381 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.36926 * 120.00017 * 275.59181 * 5 4 3 7 7 H 1.08008 * 120.00324 * 321.35276 * 6 5 4 8 8 C 1.38811 * 120.00372 * 141.35710 * 6 5 4 9 9 N 1.31619 * 120.00663 * 158.23872 * 8 6 5 10 10 Si 1.86807 * 119.99666 * 338.23731 * 8 6 5 11 11 H 1.48500 * 109.46919 * 95.44609 * 10 8 6 12 12 H 1.48499 * 109.47030 * 215.44723 * 10 8 6 13 13 H 1.48502 * 109.46972 * 335.44632 * 10 8 6 14 14 C 1.46501 * 119.99825 * 95.59234 * 5 4 3 15 15 C 1.53005 * 109.47044 * 89.99686 * 14 5 4 16 16 C 1.53004 * 109.46736 * 60.00193 * 15 14 5 17 17 O 1.42898 * 109.47282 * 300.00061 * 15 14 5 18 18 C 1.50697 * 109.47065 * 179.97438 * 15 14 5 19 19 C 1.38240 * 120.00329 * 329.72984 * 18 15 14 20 20 C 1.38227 * 120.00332 * 179.78354 * 19 18 15 21 21 C 1.38240 * 119.99751 * 0.44684 * 20 19 18 22 22 C 1.38236 * 120.00005 * 359.80821 * 21 20 19 23 23 C 1.38230 * 119.99776 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47152 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47347 * 300.00007 * 1 2 3 26 26 H 1.09003 * 109.46873 * 60.00345 * 1 2 3 27 27 H 1.09002 * 109.47214 * 240.00057 * 2 1 3 28 28 H 1.08998 * 109.47017 * 120.00101 * 2 1 3 29 29 H 1.09002 * 109.46999 * 59.99925 * 3 2 1 30 30 H 1.08998 * 109.47226 * 299.99973 * 3 2 1 31 31 H 1.09002 * 109.47165 * 59.99966 * 4 3 2 32 32 H 1.08998 * 109.46868 * 300.00131 * 4 3 2 33 33 H 0.97000 * 120.00284 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47309 * 330.00217 * 14 5 4 35 35 H 1.08992 * 109.47146 * 210.00010 * 14 5 4 36 36 H 1.08998 * 109.46925 * 180.02562 * 16 15 14 37 37 H 1.08996 * 109.46756 * 299.99422 * 16 15 14 38 38 H 1.08992 * 109.47196 * 59.99834 * 16 15 14 39 39 H 0.96702 * 113.99704 * 300.00015 * 17 15 14 40 40 H 1.08006 * 119.99453 * 359.97438 * 19 18 15 41 41 H 1.08004 * 120.00537 * 180.27278 * 20 19 18 42 42 H 1.07999 * 119.99940 * 179.83111 * 21 20 19 43 43 H 1.07998 * 119.99892 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.99959 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1770 3.5085 -1.1798 7 1 4.5274 3.0004 -2.0662 8 6 3.8472 4.8556 -1.2368 9 7 4.3401 5.6141 -2.1929 10 14 2.7037 5.5922 0.0437 11 1 3.5079 6.2085 1.1293 12 1 1.8520 6.6296 -0.5916 13 1 1.8423 4.5238 0.6110 14 6 4.4195 3.4724 1.2629 15 6 5.8988 3.2197 1.5612 16 6 6.7527 3.7954 0.4296 17 8 6.1304 1.8134 1.6646 18 6 6.2705 3.8874 2.8600 19 6 5.6174 5.0393 3.2568 20 6 5.9553 5.6493 4.4503 21 6 6.9528 5.1125 5.2427 22 6 7.6096 3.9636 4.8434 23 6 7.2685 3.3511 3.6520 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 4.1099 6.5555 -2.2325 34 1 3.8112 3.0623 2.0691 35 1 4.2428 4.5450 1.1840 36 1 7.8065 3.6150 0.6419 37 1 6.4839 3.3127 -0.5099 38 1 6.5760 4.8680 0.3508 39 1 5.6205 1.3812 2.3635 40 1 4.8409 5.4610 2.6356 41 1 5.4420 6.5468 4.7624 42 1 7.2187 5.5906 6.1739 43 1 8.3886 3.5440 5.4627 44 1 7.7814 2.4532 3.3402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253104072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:30 Heat of formation + Delta-G solvation = -14.657517 kcal Electronic energy + Delta-G solvation = -22719.810174 eV Core-core repulsion = 19637.389329 eV Total energy + Delta-G solvation = -3082.420845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.59907 -37.35063 -35.63376 -33.95663 -31.97182 -31.45239 -30.64220 -29.09454 -27.86014 -26.12630 -23.99085 -22.82697 -22.20185 -21.02148 -20.16156 -19.60835 -17.43603 -16.78079 -15.89305 -15.32371 -14.83635 -14.79666 -14.40822 -14.33692 -13.83751 -13.51898 -13.32683 -13.08309 -12.90022 -12.45250 -12.32815 -12.00297 -11.83775 -11.61002 -11.49488 -11.34300 -10.98326 -10.90195 -10.69490 -10.68381 -10.53899 -10.37950 -10.17831 -10.11323 -9.81345 -9.53539 -9.37092 -8.71583 -8.56643 -8.41470 -6.73969 -6.00205 -3.39502 1.56109 1.60759 3.21811 3.43143 3.48252 3.99897 4.48898 4.70598 4.88880 5.12274 5.16873 5.21688 5.28399 5.37630 5.41083 5.56344 5.58744 5.70843 5.75937 5.79545 5.87748 5.95347 6.14030 6.17201 6.24086 6.27801 6.32835 6.35249 6.46067 6.49355 6.57824 6.61638 6.65706 6.68184 6.71096 6.84852 6.92524 6.97429 7.14750 7.21285 7.40357 8.05459 8.21400 8.40607 8.99869 9.71315 10.14390 11.15413 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.006765 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.064424 B = 4137.813373 C = 4914.015376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.157 3.843 5 N -0.595 5.595 6 C -0.257 4.257 7 H 0.079 0.921 8 C 0.038 3.962 9 N -0.897 5.897 10 Si 0.865 3.135 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.267 1.267 14 C 0.119 3.881 15 C 0.152 3.848 16 C -0.114 4.114 17 O -0.545 6.545 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.108 4.108 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.361 0.639 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -5.442 12.210 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.181 4.181 4 C 0.032 3.968 5 N -0.315 5.315 6 C -0.386 4.386 7 H 0.096 0.904 8 C -0.162 4.162 9 N -0.539 5.539 10 Si 0.696 3.304 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.191 1.191 14 C -0.008 4.008 15 C 0.109 3.891 16 C -0.171 4.171 17 O -0.349 6.349 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.206 0.794 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.310 -5.157 11.575 12.740 hybrid contribution -1.129 0.732 1.280 1.857 sum 0.181 -4.425 12.855 13.597 Atomic orbital electron populations 1.21770 0.96824 1.00559 1.01589 1.21492 0.95037 0.98240 1.01172 1.22247 0.99540 0.94527 1.01819 1.20881 0.90576 0.86225 0.99157 1.43950 1.73702 1.11278 1.02595 1.18708 1.38626 0.92630 0.88613 0.90355 1.25453 0.97830 0.96822 0.96125 1.69855 1.43490 1.05847 1.34669 0.87133 0.82993 0.78708 0.81567 1.21520 1.23004 1.19124 1.21856 0.91760 0.98160 0.89011 1.20918 0.97950 0.79981 0.90269 1.21552 0.96154 1.00691 0.98692 1.86579 1.69365 1.20566 1.58411 1.20942 0.95926 0.96075 0.97320 1.21328 0.99949 0.95650 0.96475 1.21120 0.98000 0.99911 0.95046 1.21071 0.97202 0.96794 0.99752 1.21098 1.00099 0.96319 0.96921 1.21032 0.96973 1.00326 0.94240 0.93545 0.93263 0.92895 0.92362 0.92837 0.93474 0.91734 0.93535 0.94070 0.92799 0.94286 0.91911 0.94606 0.88712 0.91921 0.79372 0.85713 0.86445 0.86634 0.86524 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.74 5.93 -26.74 -0.16 -1.90 16 3 C -0.14 -2.55 5.51 -26.73 -0.15 -2.70 16 4 C 0.16 3.04 5.35 -4.04 -0.02 3.01 16 5 N -0.59 -13.30 1.78 -173.24 -0.31 -13.61 16 6 C -0.26 -6.77 7.73 -15.06 -0.12 -6.88 16 7 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 8 C 0.04 1.05 5.31 -17.43 -0.09 0.95 16 9 N -0.90 -26.34 13.97 55.49 0.78 -25.56 16 10 Si 0.87 21.40 25.05 -169.99 -4.26 17.14 16 11 H -0.29 -6.77 5.89 56.52 0.33 -6.44 16 12 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 C 0.12 2.46 3.04 -4.04 -0.01 2.45 16 15 C 0.15 2.86 0.99 -91.77 -0.09 2.77 16 16 C -0.11 -2.40 8.22 37.16 0.31 -2.09 16 17 O -0.55 -9.48 10.78 -35.23 -0.38 -9.86 16 18 C -0.10 -1.73 4.80 -104.62 -0.50 -2.23 16 19 C -0.12 -1.98 9.14 -39.59 -0.36 -2.34 16 20 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 21 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 22 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.11 -1.60 9.35 -39.59 -0.37 -1.97 16 24 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.04 0.71 7.01 -51.93 -0.36 0.35 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.06 1.43 1.84 -51.93 -0.10 1.33 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.26 6.29 -51.93 -0.33 1.93 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.36 5.07 8.79 45.56 0.40 5.47 16 40 H 0.13 2.33 5.38 -52.48 -0.28 2.05 16 41 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.13 1.77 7.48 -52.48 -0.39 1.38 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -28.73 343.88 -7.98 -36.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.60 Total: 8.83 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.39 Total: -18.84 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.47 Total: -39.17 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.38 Total: -9.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.26 Total: 17.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.73 -7.98 -36.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253104072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.058 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds