Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 H 1.09000 * 109.47004 * 54.78026 * 3 2 1 5 5 C 1.50693 * 109.47135 * 174.78104 * 3 2 1 6 6 H 1.08009 * 120.00033 * 119.99866 * 5 3 2 7 7 C 1.37874 * 120.00188 * 299.99891 * 5 3 2 8 8 N 1.31523 * 120.00036 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47379 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47276 * 210.00198 * 9 7 5 12 12 H 1.48505 * 109.46820 * 329.99699 * 9 7 5 13 13 N 1.46903 * 109.47017 * 294.78138 * 3 2 1 14 14 C 1.46899 * 110.99970 * 154.13671 * 13 3 2 15 15 C 1.53002 * 109.47160 * 185.50164 * 14 13 3 16 16 C 1.52999 * 109.47022 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47071 * 179.97438 * 16 15 14 18 18 C 1.38271 * 119.94722 * 269.72794 * 17 16 15 19 19 C 1.38146 * 120.05694 * 179.72410 * 18 17 16 20 20 C 1.38736 * 119.94307 * 0.57279 * 19 18 17 21 21 O 1.35897 * 120.05330 * 179.68439 * 20 19 18 22 22 C 1.42887 * 117.00432 * 0.02562 * 21 20 19 23 23 C 1.38735 * 119.88738 * 359.69945 * 20 19 18 24 24 C 1.38146 * 119.94300 * 0.02562 * 23 20 19 25 25 H 1.09002 * 109.46949 * 297.22533 * 1 2 3 26 26 H 1.08996 * 109.47182 * 57.23197 * 1 2 3 27 27 H 1.09002 * 109.47103 * 177.23346 * 1 2 3 28 28 H 1.08994 * 109.47046 * 239.99774 * 2 1 3 29 29 H 1.09006 * 109.47122 * 120.00224 * 2 1 3 30 30 H 0.96999 * 119.99288 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99954 * 278.09556 * 13 3 2 32 32 H 1.09006 * 109.47013 * 305.50388 * 14 13 3 33 33 H 1.08998 * 109.47077 * 65.49548 * 14 13 3 34 34 H 1.08998 * 109.46839 * 299.99612 * 15 14 13 35 35 H 1.08999 * 109.47146 * 59.99928 * 15 14 13 36 36 H 1.08998 * 109.47201 * 299.99873 * 16 15 14 37 37 H 1.08999 * 109.47343 * 59.99896 * 16 15 14 38 38 H 1.08000 * 119.96707 * 359.97347 * 18 17 16 39 39 H 1.08000 * 120.02943 * 180.24816 * 19 18 17 40 40 H 1.08998 * 109.47542 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47548 * 300.00650 * 22 21 20 42 42 H 1.09006 * 109.47035 * 60.00270 * 22 21 20 43 43 H 1.08005 * 120.02877 * 179.97438 * 23 20 19 44 44 H 1.08004 * 119.96644 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4444 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1388 0.8800 1.2362 8 7 5.4492 0.8812 1.3487 9 14 3.0872 0.1121 2.5755 10 1 2.8674 -1.3244 2.2699 11 1 3.7797 0.2397 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5566 3.5529 -1.0839 15 6 1.0237 4.1849 -2.3714 16 6 0.9209 5.7007 -2.1908 17 6 0.3967 6.3233 -3.4590 18 6 1.2785 6.7377 -4.4402 19 6 0.8002 7.3035 -5.6062 20 6 -0.5656 7.4666 -5.7872 21 8 -1.0383 8.0288 -6.9306 22 6 -0.0722 8.4284 -7.9046 23 6 -1.4480 7.0552 -4.7988 24 6 -0.9649 6.4848 -3.6371 25 1 -0.3633 0.4702 0.9138 26 1 -0.3633 0.5562 -0.8641 27 1 -0.3633 -1.0265 -0.0496 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.8694 0.4838 2.1274 31 1 2.3005 1.8649 -1.9980 32 1 0.8765 3.7752 -0.2615 33 1 2.5425 3.9603 -0.8601 34 1 1.7039 3.9627 -3.1936 35 1 0.0378 3.7776 -2.5951 36 1 0.2410 5.9234 -1.3684 37 1 1.9070 6.1078 -1.9673 38 1 2.3418 6.6152 -4.2965 39 1 1.4891 7.6233 -6.3739 40 1 -0.5817 8.8603 -8.7659 41 1 0.5979 9.1697 -7.4690 42 1 0.5045 7.5596 -8.2221 43 1 -2.5117 7.1815 -4.9372 44 1 -1.6514 6.1647 -2.8672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -29.820119 kcal Electronic energy + Delta-G solvation = -20752.248609 eV Core-core repulsion = 17669.170264 eV Total energy + Delta-G solvation = -3083.078344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27537 -38.01430 -36.64572 -34.27955 -32.13668 -31.53633 -31.16365 -29.20318 -27.68243 -26.65397 -24.34242 -22.76137 -22.43620 -21.29073 -20.65270 -19.70922 -18.31569 -17.00480 -16.44216 -15.95394 -15.57124 -15.22567 -14.77082 -14.40169 -14.07456 -13.82811 -13.71835 -13.46666 -13.14899 -12.90339 -12.59385 -12.25147 -12.15197 -12.09951 -11.75545 -11.56558 -11.36264 -11.13076 -10.99888 -10.84637 -10.71977 -10.66479 -10.23339 -10.14407 -9.74047 -9.42118 -9.19477 -9.10204 -8.57384 -8.15238 -7.31951 -6.12644 -4.13334 1.23999 1.32777 3.07026 3.26380 3.36646 3.39381 3.65184 4.37431 4.62327 4.73306 4.80677 4.85057 4.86231 5.14579 5.16906 5.19128 5.24123 5.31919 5.40281 5.54323 5.76179 5.78365 5.86467 5.99650 6.05998 6.09224 6.13772 6.18563 6.28243 6.30051 6.32096 6.51134 6.64839 6.67750 6.72619 6.74395 6.77966 7.00759 7.12762 7.22153 7.30264 7.58005 8.07243 8.40709 8.51323 8.90048 9.51214 11.00363 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032802 B = 0.002833 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.389361 B = 9879.455248 C =10292.110249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.683 5.683 14 C 0.064 3.936 15 C -0.107 4.107 16 C -0.078 4.078 17 C -0.106 4.106 18 C -0.078 4.078 19 C -0.206 4.206 20 C 0.114 3.886 21 O -0.321 6.321 22 C 0.028 3.972 23 C -0.150 4.150 24 C -0.078 4.078 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.333 0.667 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 13.271 -13.517 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.311 5.311 14 C -0.066 4.066 15 C -0.145 4.145 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.096 4.096 19 C -0.224 4.224 20 C 0.069 3.931 21 O -0.235 6.235 22 C -0.067 4.067 23 C -0.169 4.169 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.566 13.155 -13.364 22.574 hybrid contribution 0.972 -0.243 0.725 1.237 sum -11.594 12.912 -12.639 21.468 Atomic orbital electron populations 1.21738 0.97600 0.99399 1.01363 1.21815 0.93832 0.99418 1.00307 1.19560 0.94214 0.90628 0.88222 0.95123 1.21756 0.90619 1.38993 1.07001 0.91032 1.25021 0.94791 0.95320 0.97983 1.69926 1.08983 1.45149 1.29635 0.86797 0.80619 0.79872 0.80602 1.20458 1.22652 1.18937 1.60733 1.54728 1.06700 1.08989 1.21800 0.99152 0.89573 0.96034 1.21546 1.01832 0.92658 0.98502 1.20568 1.01408 0.95797 0.93823 1.19922 0.93287 1.00310 0.97152 1.20899 0.99828 0.96438 0.92466 1.21210 0.94029 1.06951 1.00238 1.19019 0.92347 0.95029 0.86685 1.86043 1.35901 1.75271 1.26287 1.23026 0.93071 0.99695 0.90920 1.20408 0.99345 1.03816 0.93317 1.20907 0.95090 0.97153 0.96478 0.94338 0.91775 0.94860 0.92456 0.93822 0.92665 0.85048 0.92253 0.95025 0.92396 0.91594 0.91051 0.91077 0.85691 0.85699 0.88406 0.92740 0.92663 0.85430 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.83 37.16 0.37 -2.31 16 2 C -0.12 -2.55 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.27 1.56 -68.87 -0.11 4.17 16 4 H 0.03 0.76 6.76 -51.93 -0.35 0.41 16 5 C -0.54 -15.04 9.05 -34.44 -0.31 -15.35 16 6 H 0.07 2.14 7.97 -52.48 -0.42 1.72 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 9 Si 0.89 22.11 24.41 -169.99 -4.15 17.96 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.35 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.68 -13.62 5.63 -107.95 -0.61 -14.23 16 14 C 0.06 1.13 5.51 -3.82 -0.02 1.11 16 15 C -0.11 -1.51 5.50 -26.73 -0.15 -1.66 16 16 C -0.08 -0.94 5.34 -27.89 -0.15 -1.09 16 17 C -0.11 -1.25 5.13 -104.60 -0.54 -1.79 16 18 C -0.08 -0.88 9.69 -39.60 -0.38 -1.27 16 19 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 20 C 0.11 1.30 6.69 -39.21 -0.26 1.03 16 21 O -0.32 -3.40 10.50 -19.42 -0.20 -3.60 16 22 C 0.03 0.19 9.81 101.05 0.99 1.18 16 23 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 24 C -0.08 -0.87 9.69 -39.61 -0.38 -1.25 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.04 1.02 3.21 -51.93 -0.17 0.85 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.33 6.72 8.46 -39.29 -0.33 6.38 16 32 H 0.06 1.04 7.92 -51.93 -0.41 0.63 16 33 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 42 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 43 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -30.66 351.62 -8.27 -38.94 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.45 Total: 4.85 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.93 Total: -22.58 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.17 Total: -40.87 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.15 Total: 17.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.66 -8.27 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.116 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds