Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47609 * 2 1 4 4 H 1.09004 * 109.46935 * 304.51212 * 3 2 1 5 5 C 1.50700 * 109.47463 * 184.51018 * 3 2 1 6 6 H 1.07998 * 120.00014 * 244.51167 * 5 3 2 7 7 C 1.37878 * 120.00024 * 64.50400 * 5 3 2 8 8 N 1.31515 * 119.99773 * 11.67042 * 7 5 3 9 9 Si 1.86799 * 120.00403 * 191.67165 * 7 5 3 10 10 H 1.48496 * 109.47489 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46586 * 300.00002 * 9 7 5 12 12 H 1.48500 * 109.46975 * 59.99394 * 9 7 5 13 13 N 1.46904 * 109.47072 * 64.50743 * 3 2 1 14 14 C 1.46901 * 110.99752 * 219.80260 * 13 3 2 15 15 C 1.53001 * 109.47209 * 303.66176 * 14 13 3 16 16 C 1.52997 * 109.47258 * 63.66438 * 14 13 3 17 17 C 1.50701 * 109.46647 * 183.66519 * 14 13 3 18 18 C 1.38266 * 119.94795 * 359.72666 * 17 14 13 19 19 C 1.38147 * 120.05646 * 179.72582 * 18 17 14 20 20 C 1.38727 * 119.93983 * 0.56986 * 19 18 17 21 21 O 1.35906 * 120.05385 * 179.68125 * 20 19 18 22 22 C 1.42905 * 116.99895 * 0.02562 * 21 20 19 23 23 C 1.38735 * 119.89426 * 359.70485 * 20 19 18 24 24 C 1.38148 * 119.94056 * 359.97438 * 23 20 19 25 25 H 1.08992 * 109.47622 * 184.64013 * 1 2 3 26 26 H 1.09003 * 109.46942 * 304.64332 * 1 2 3 27 27 H 1.09003 * 109.47103 * 64.63958 * 1 2 3 28 28 H 1.08997 * 109.47046 * 239.99273 * 2 1 3 29 29 H 1.09009 * 109.46883 * 120.00004 * 2 1 3 30 30 H 0.96999 * 120.00152 * 357.33325 * 8 7 5 31 31 H 1.00904 * 110.99651 * 95.85337 * 13 3 2 32 32 H 1.08997 * 109.46871 * 66.66983 * 15 14 13 33 33 H 1.08998 * 109.47152 * 186.67040 * 15 14 13 34 34 H 1.08999 * 109.47163 * 306.67174 * 15 14 13 35 35 H 1.09003 * 109.46881 * 62.25531 * 16 14 13 36 36 H 1.08994 * 109.46921 * 182.25315 * 16 14 13 37 37 H 1.09003 * 109.46991 * 302.25787 * 16 14 13 38 38 H 1.07998 * 119.96910 * 359.97438 * 18 17 14 39 39 H 1.07997 * 120.02359 * 180.24878 * 19 18 17 40 40 H 1.08998 * 109.47078 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46804 * 300.00194 * 22 21 20 42 42 H 1.09008 * 109.46457 * 59.99902 * 22 21 20 43 43 H 1.07993 * 120.02963 * 179.97438 * 23 20 19 44 44 H 1.07998 * 119.97140 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6122 1.9791 -0.8468 5 6 3.5429 1.4439 -0.1117 6 1 4.1444 1.8246 0.7004 7 6 4.1500 0.9590 -1.2507 8 7 3.4315 0.7105 -2.3239 9 14 5.9930 0.6549 -1.2697 10 1 6.3957 0.1379 -2.6023 11 1 6.7074 1.9277 -0.9965 12 1 6.3409 -0.3420 -0.2255 13 7 1.6413 2.1028 1.2502 14 6 1.2250 3.4898 1.0033 15 6 2.3565 4.2449 0.3029 16 6 -0.0203 3.4980 0.1145 17 6 0.9102 4.1608 2.3154 18 6 1.0322 3.4553 3.4983 19 6 0.7497 4.0699 4.7028 20 6 0.3318 5.3925 4.7240 21 8 0.0470 5.9975 5.9072 22 6 0.2003 5.2117 7.0910 23 6 0.2047 6.0967 3.5354 24 6 0.4949 5.4795 2.3340 25 1 -0.3634 -1.0242 0.0831 26 1 -0.3633 0.5842 0.8455 27 1 -0.3633 0.4402 -0.9287 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 2.4693 0.8315 -2.3021 31 1 2.3839 2.0641 1.9323 32 1 2.5043 3.8334 -0.6955 33 1 2.0958 5.3004 0.2259 34 1 3.2755 4.1388 0.8793 35 1 -0.8381 2.9949 0.6304 36 1 -0.3056 4.5275 -0.1015 37 1 0.1958 2.9773 -0.8184 38 1 1.3525 2.4240 3.4807 39 1 0.8490 3.5194 5.6267 40 1 -0.0582 5.8134 7.9624 41 1 -0.4583 4.3447 7.0393 42 1 1.2347 4.8780 7.1741 43 1 -0.1207 7.1263 3.5493 44 1 0.3957 6.0270 1.4084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = -21.681241 kcal Electronic energy + Delta-G solvation = -22387.325479 eV Core-core repulsion = 19304.600063 eV Total energy + Delta-G solvation = -3082.725416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15197 -38.53875 -36.49784 -33.89421 -31.53956 -31.04107 -29.77476 -28.58475 -27.29234 -26.57817 -25.56733 -23.02695 -22.43269 -22.08131 -19.92700 -18.68523 -18.12290 -17.16762 -16.07944 -15.74692 -15.62318 -14.54205 -14.28711 -13.79588 -13.75942 -13.56017 -13.29836 -12.94805 -12.91995 -12.72005 -12.32363 -12.16954 -12.05319 -11.84490 -11.60668 -11.26910 -11.06119 -10.97010 -10.73277 -10.63542 -10.53342 -10.39114 -10.19265 -10.11021 -9.78958 -9.56191 -8.83030 -8.79849 -8.20879 -7.88871 -7.30664 -6.34294 -4.07684 1.53601 1.64677 3.28340 3.41108 3.43441 3.61151 3.96885 4.50905 4.87610 4.94472 5.03384 5.04012 5.14788 5.22679 5.32560 5.35068 5.60745 5.63045 5.67721 5.84615 5.87785 6.15128 6.20520 6.21128 6.28618 6.30709 6.35893 6.46993 6.49114 6.51468 6.65868 6.76143 6.86467 6.92809 6.94720 6.97288 7.09109 7.23361 7.36869 7.47493 7.60892 7.97592 8.07302 8.48346 8.62101 8.84974 9.62978 10.99818 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022408 B = 0.004558 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.251263 B = 6141.566962 C = 6417.900929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.201 3.799 4 H 0.031 0.969 5 C -0.618 4.618 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.059 2.941 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.289 1.289 13 N -0.674 5.674 14 C 0.156 3.844 15 C -0.159 4.159 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.066 4.066 19 C -0.209 4.209 20 C 0.110 3.890 21 O -0.323 6.323 22 C 0.029 3.971 23 C -0.154 4.154 24 C -0.079 4.079 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.272 0.728 31 H 0.331 0.669 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 7.635 12.537 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.657 4.657 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.542 5.542 9 Si 0.888 3.112 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.304 5.304 14 C 0.064 3.936 15 C -0.218 4.218 16 C -0.188 4.188 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.227 4.227 20 C 0.065 3.935 21 O -0.237 6.237 22 C -0.066 4.066 23 C -0.173 4.173 24 C -0.098 4.098 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.156 7.070 11.578 14.897 hybrid contribution -0.199 0.622 1.014 1.206 sum -6.355 7.692 12.592 16.065 Atomic orbital electron populations 1.21751 0.98472 0.98951 1.00675 1.21553 0.92725 0.99721 1.00511 1.19284 0.93935 0.90331 0.87174 0.95180 1.22498 0.91879 1.46179 1.05168 0.93457 1.25615 1.06362 0.93800 0.92032 1.70807 1.08683 1.46415 1.28252 0.83681 0.75055 0.76485 0.75975 1.20901 1.21721 1.21511 1.60992 1.43575 1.12326 1.13550 1.19582 0.94563 0.89265 0.90164 1.22458 0.98405 0.98294 1.02651 1.21888 0.96829 1.00408 0.99659 1.19955 1.00191 0.93674 0.95296 1.20993 0.96354 1.00355 0.90686 1.21226 1.07773 0.94407 0.99322 1.18995 0.97247 0.91748 0.85502 1.86024 1.83959 1.40676 1.13078 1.22990 1.01327 0.96566 0.85720 1.20298 1.06741 1.00357 0.89889 1.20788 0.97692 0.94403 0.96896 0.95380 0.92452 0.94594 0.92368 0.93975 0.91713 0.85040 0.90830 0.94388 0.92823 0.92602 0.93424 0.91781 0.84501 0.85958 0.88647 0.92792 0.92792 0.85783 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.85 37.15 0.37 -2.36 16 2 C -0.11 -2.39 5.32 -26.74 -0.14 -2.54 16 3 C 0.20 4.60 0.82 -68.86 -0.06 4.55 16 4 H 0.03 0.75 4.30 -51.93 -0.22 0.53 16 5 C -0.62 -15.98 7.21 -34.44 -0.25 -16.22 16 6 H 0.05 1.24 7.52 -52.49 -0.39 0.85 16 7 C 0.03 0.75 5.12 -17.82 -0.09 0.66 16 8 N -0.91 -25.95 13.00 55.43 0.72 -25.23 16 9 Si 1.06 24.51 29.92 -169.99 -5.09 19.42 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 13 N -0.67 -13.22 4.42 -95.41 -0.42 -13.64 16 14 C 0.16 2.76 0.78 -132.75 -0.10 2.66 16 15 C -0.16 -3.00 7.38 37.16 0.27 -2.73 16 16 C -0.13 -2.21 8.22 37.16 0.31 -1.90 16 17 C -0.09 -1.45 4.77 -104.60 -0.50 -1.95 16 18 C -0.07 -1.01 9.11 -39.60 -0.36 -1.37 16 19 C -0.21 -2.87 9.04 -39.43 -0.36 -3.22 16 20 C 0.11 1.53 6.69 -39.22 -0.26 1.27 16 21 O -0.32 -4.11 10.50 -19.45 -0.20 -4.32 16 22 C 0.03 0.25 9.81 101.05 0.99 1.25 16 23 C -0.15 -2.13 9.99 -39.43 -0.39 -2.52 16 24 C -0.08 -1.15 8.65 -39.60 -0.34 -1.49 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.08 7.61 -51.93 -0.40 0.68 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.46 6.44 -51.93 -0.33 1.12 16 29 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.27 7.74 6.19 -40.82 -0.25 7.49 16 31 H 0.33 6.66 6.65 -39.29 -0.26 6.39 16 32 H 0.07 1.60 6.56 -51.93 -0.34 1.26 16 33 H 0.04 0.62 7.17 -51.93 -0.37 0.25 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.70 7.46 -51.93 -0.39 0.31 16 37 H 0.06 1.20 6.18 -51.93 -0.32 0.88 16 38 H 0.14 2.13 6.32 -52.49 -0.33 1.80 16 39 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 42 H 0.05 0.44 7.66 -51.92 -0.40 0.04 16 43 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.13 1.63 7.08 -52.49 -0.37 1.25 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -28.14 339.92 -7.66 -35.79 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.87 Total: 8.77 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -0.92 Total: -25.93 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.30 Total: -38.86 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.32 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.14 -7.66 -35.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds