Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 H 1.08996 * 109.46922 * 180.96446 * 3 2 1 5 5 C 1.50703 * 109.46949 * 300.96178 * 3 2 1 6 6 H 1.07999 * 119.99479 * 120.00353 * 5 3 2 7 7 C 1.37874 * 120.00166 * 300.00260 * 5 3 2 8 8 N 1.31509 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46940 * 59.99860 * 9 7 5 11 11 H 1.48497 * 109.46773 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46863 * 299.99738 * 9 7 5 13 13 N 1.46897 * 109.47092 * 60.96575 * 3 2 1 14 14 C 1.46896 * 111.00101 * 82.15985 * 13 3 2 15 15 C 1.53001 * 109.47086 * 184.93553 * 14 13 3 16 16 H 1.08998 * 109.47789 * 304.67652 * 15 14 13 17 17 C 1.53001 * 109.47258 * 184.67333 * 15 14 13 18 18 O 1.42905 * 109.46944 * 65.09015 * 17 15 14 19 19 C 1.53000 * 109.46990 * 64.67809 * 15 14 13 20 20 C 1.50704 * 109.47345 * 184.99815 * 19 15 14 21 21 C 1.38231 * 120.00045 * 269.72500 * 20 19 15 22 22 C 1.38226 * 120.00048 * 180.32557 * 21 20 19 23 23 C 1.38242 * 120.00127 * 359.94769 * 22 21 20 24 24 C 1.38236 * 119.99977 * 0.02562 * 23 22 21 25 25 C 1.38239 * 119.99536 * 89.99590 * 20 19 15 26 26 H 1.08998 * 109.46993 * 65.18912 * 1 2 3 27 27 H 1.08999 * 109.47400 * 185.19141 * 1 2 3 28 28 H 1.09003 * 109.47081 * 305.19283 * 1 2 3 29 29 H 1.09005 * 109.47421 * 240.00173 * 2 1 3 30 30 H 1.08995 * 109.47022 * 120.00073 * 2 1 3 31 31 H 0.97000 * 119.99915 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99863 * 206.11911 * 13 3 2 33 33 H 1.09006 * 109.46835 * 64.94202 * 14 13 3 34 34 H 1.08997 * 109.47378 * 304.93951 * 14 13 3 35 35 H 1.09002 * 109.47213 * 185.08996 * 17 15 14 36 36 H 1.09001 * 109.47383 * 305.09211 * 17 15 14 37 37 H 0.96697 * 113.99611 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.47082 * 64.99604 * 19 15 14 39 39 H 1.09006 * 109.46922 * 304.99513 * 19 15 14 40 40 H 1.07998 * 119.99629 * 0.27354 * 21 20 19 41 41 H 1.08001 * 120.00258 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.99864 * 180.02562 * 23 22 21 43 43 H 1.07991 * 120.00273 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00361 * 359.72605 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1298 1.4426 -0.0173 5 6 1.5182 2.1598 -1.2184 6 1 0.8991 3.0373 -1.1045 7 6 1.8314 1.6957 -2.4784 8 7 2.5858 0.6275 -2.6170 9 14 1.1852 2.5853 -3.9886 10 1 1.6808 3.9852 -3.9883 11 1 1.6613 1.8923 -5.2126 12 1 -0.2996 2.5858 -3.9652 13 7 1.5695 2.1282 1.2109 14 6 2.4334 1.8219 2.3588 15 6 1.8445 2.4514 3.6228 16 1 1.7029 3.5205 3.4643 17 6 2.8022 2.2321 4.7956 18 8 4.0200 2.9402 4.5549 19 6 0.4963 1.7995 3.9366 20 6 -0.1406 2.5016 5.1081 21 6 0.1046 2.0604 6.3950 22 6 -0.4849 2.7002 7.4691 23 6 -1.3190 3.7820 7.2565 24 6 -1.5638 4.2235 5.9697 25 6 -0.9746 3.5834 4.8954 26 1 -0.3633 0.4312 -0.9328 27 1 -0.3634 -1.0234 0.0930 28 1 -0.3633 0.5923 0.8398 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.8064 0.3013 -3.5035 32 1 1.5066 3.1241 1.0612 33 1 3.4299 2.2267 2.1817 34 1 2.4977 0.7414 2.4870 35 1 2.3432 2.6001 5.7132 36 1 3.0148 1.1679 4.8971 37 1 4.6753 2.8463 5.2597 38 1 0.6493 0.7487 4.1822 39 1 -0.1564 1.8782 3.0672 40 1 0.7562 1.2153 6.5610 41 1 -0.2936 2.3552 8.4745 42 1 -1.7793 4.2820 8.0958 43 1 -2.2157 5.0683 5.8035 44 1 -1.1662 3.9281 3.8900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -63.908291 kcal Electronic energy + Delta-G solvation = -21774.100638 eV Core-core repulsion = 18689.544119 eV Total energy + Delta-G solvation = -3084.556519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41735 -38.78340 -37.60364 -35.68764 -34.00411 -32.53458 -31.71772 -30.88634 -28.26948 -26.89063 -25.60217 -24.75677 -23.36389 -22.34514 -21.06891 -20.79713 -18.34781 -18.26256 -17.60971 -16.91012 -16.37576 -16.16306 -15.98310 -15.72631 -15.26974 -14.89561 -14.74172 -14.33562 -14.18708 -13.99113 -13.76436 -13.66426 -13.25592 -12.99081 -12.84999 -12.72925 -12.59749 -12.39231 -12.27065 -11.85711 -11.77379 -11.72138 -11.58553 -11.44365 -11.18321 -10.84300 -10.73299 -10.51405 -9.72593 -9.50216 -8.94043 -8.08159 -6.20086 0.53367 0.57496 1.42821 1.43969 1.51275 2.43491 2.94434 3.20567 3.43123 3.62693 3.82301 4.04392 4.18644 4.24370 4.31466 4.37649 4.39983 4.57230 4.60980 4.67378 4.72409 4.77157 4.81199 4.85502 4.89523 4.96008 5.07905 5.16213 5.24264 5.30146 5.36566 5.42952 5.43724 5.59164 5.65893 5.69865 5.73094 5.84018 5.86943 5.92477 6.21496 6.30717 6.52471 6.82530 6.94835 7.04848 7.48635 8.97092 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.004005 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.265858 B = 6990.200292 C = 7465.219856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C 0.222 3.778 4 H -0.045 1.045 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.672 5.672 14 C 0.074 3.926 15 C -0.064 4.064 16 H 0.060 0.940 17 C 0.082 3.918 18 O -0.594 6.594 19 C -0.060 4.060 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.134 4.134 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.005 0.995 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.394 0.606 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 3.403 20.787 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.028 1.028 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.302 5.302 14 C -0.055 4.055 15 C -0.083 4.083 16 H 0.079 0.921 17 C 0.004 3.996 18 O -0.403 6.403 19 C -0.098 4.098 20 C -0.085 4.085 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.152 4.152 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.243 0.757 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.559 2.952 20.252 21.207 hybrid contribution 1.131 0.639 -1.027 1.656 sum -4.428 3.591 19.225 20.053 Atomic orbital electron populations 1.21294 0.95782 0.98451 1.00776 1.21283 0.96415 0.97469 0.98313 1.18886 0.90385 0.92436 0.86933 1.02763 1.21404 1.31341 1.11967 0.91310 0.92470 1.25632 0.95331 0.95705 1.01648 1.70021 1.38116 1.24247 1.23407 0.85670 0.78901 0.78636 0.78775 1.19886 1.21184 1.19557 1.60617 1.51553 1.13310 1.04670 1.21831 0.93236 0.99337 0.91134 1.20959 0.94161 0.99817 0.93338 0.92149 1.22329 0.84547 0.95557 0.97184 1.86492 1.28209 1.74868 1.50694 1.20428 0.94785 0.98526 0.96028 1.20054 0.97164 0.96215 0.95091 1.21276 1.00663 1.00821 0.91903 1.21443 0.97088 0.96082 0.99596 1.21444 0.99039 0.97461 0.97284 1.21402 0.99954 1.00272 0.92901 1.21273 0.97928 0.96371 0.99631 0.95185 0.94739 0.92341 0.92669 0.96152 0.93081 0.85590 0.97652 0.92468 0.91738 0.92794 0.75684 0.90788 0.90352 0.84935 0.83933 0.84116 0.84787 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.47 71.98 0.68 -4.00 16 2 C -0.10 -4.74 5.54 30.60 0.17 -4.57 16 3 C 0.22 11.41 2.29 44.17 0.10 11.51 16 4 H -0.05 -2.66 7.90 -2.39 -0.02 -2.68 16 5 C -0.52 -28.62 7.38 25.60 0.19 -28.43 16 6 H 0.06 3.08 7.66 -2.91 -0.02 3.06 16 7 C 0.02 0.88 5.30 84.65 0.45 1.33 16 8 N -0.92 -53.60 11.33 21.45 0.24 -53.36 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -28.37 4.81 -495.45 -2.38 -30.75 16 14 C 0.07 2.76 4.81 86.30 0.42 3.17 16 15 C -0.06 -1.86 2.27 -10.79 -0.02 -1.88 16 16 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 17 C 0.08 1.95 6.16 71.98 0.44 2.39 16 18 O -0.59 -15.42 13.12 -148.98 -1.95 -17.37 16 19 C -0.06 -1.60 4.78 29.85 0.14 -1.46 16 20 C -0.09 -2.02 4.71 -19.86 -0.09 -2.11 16 21 C -0.13 -2.53 7.89 22.27 0.18 -2.36 16 22 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.13 -3.19 9.70 22.27 0.22 -2.97 16 26 H 0.03 1.43 7.38 -2.39 -0.02 1.41 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.43 7.48 -2.39 -0.02 2.42 16 29 H 0.05 3.07 6.10 -2.38 -0.01 3.05 16 30 H 0.02 0.92 7.19 -2.39 -0.02 0.90 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.33 13.93 8.35 -89.69 -0.75 13.18 16 33 H 0.01 0.22 7.71 -2.38 -0.02 0.20 16 34 H 0.06 2.15 7.13 -2.39 -0.02 2.13 16 35 H 0.06 1.34 5.93 -2.39 -0.01 1.32 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.39 6.03 9.12 -74.06 -0.68 5.35 16 38 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.08 2.41 7.55 -2.38 -0.02 2.39 16 40 H 0.13 2.15 7.99 -2.91 -0.02 2.13 16 41 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.13 2.13 8.06 -2.92 -0.02 2.11 16 44 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -64.44 351.10 1.02 -63.41 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.44 Total: 27.69 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 3.54 Total: -35.67 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.14 Total: -84.11 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.95 Total: -17.37 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.44 1.02 -63.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.495 kcal (2) G-P(sol) polarization free energy of solvation -64.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds