Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46891 * 2 1 4 4 H 1.08999 * 109.47659 * 306.40890 * 3 2 1 5 5 C 1.50701 * 109.46899 * 186.41175 * 3 2 1 6 6 H 1.08007 * 119.99633 * 244.98568 * 5 3 2 7 7 C 1.37873 * 120.00572 * 64.98380 * 5 3 2 8 8 N 1.31507 * 120.00486 * 192.24343 * 7 5 3 9 9 Si 1.86806 * 119.99700 * 12.24221 * 7 5 3 10 10 H 1.48507 * 109.46759 * 93.63212 * 9 7 5 11 11 H 1.48497 * 109.47231 * 213.63300 * 9 7 5 12 12 H 1.48498 * 109.47207 * 333.63648 * 9 7 5 13 13 N 1.46897 * 109.47400 * 66.41151 * 3 2 1 14 14 C 1.46895 * 111.00110 * 262.70853 * 13 3 2 15 15 C 1.53000 * 109.47291 * 276.01671 * 14 13 3 16 16 H 1.08999 * 109.46864 * 53.48317 * 15 14 13 17 17 C 1.53005 * 109.46965 * 293.49076 * 15 14 13 18 18 O 1.42901 * 109.47183 * 66.32224 * 17 15 14 19 19 C 1.52999 * 109.47432 * 173.48965 * 15 14 13 20 20 C 1.50701 * 109.46889 * 185.00011 * 19 15 14 21 21 C 1.38239 * 120.00191 * 90.00129 * 20 19 15 22 22 C 1.38229 * 119.99924 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00130 * 0.27423 * 23 22 21 25 25 C 1.38239 * 119.99818 * 269.97750 * 20 19 15 26 26 H 1.09001 * 109.47199 * 182.27097 * 1 2 3 27 27 H 1.08997 * 109.47039 * 302.27048 * 1 2 3 28 28 H 1.09004 * 109.46910 * 62.26633 * 1 2 3 29 29 H 1.09007 * 109.46608 * 240.00512 * 2 1 3 30 30 H 1.08993 * 109.47059 * 120.00048 * 2 1 3 31 31 H 0.97005 * 120.00449 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99480 * 26.65885 * 13 3 2 33 33 H 1.08998 * 109.47326 * 156.01410 * 14 13 3 34 34 H 1.09004 * 109.47605 * 36.01449 * 14 13 3 35 35 H 1.08998 * 109.47029 * 186.32039 * 17 15 14 36 36 H 1.08995 * 109.47077 * 306.32046 * 17 15 14 37 37 H 0.96693 * 114.00222 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47272 * 65.00262 * 19 15 14 39 39 H 1.08997 * 109.46913 * 304.99722 * 19 15 14 40 40 H 1.08002 * 119.99411 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99514 * 179.97438 * 22 21 20 42 42 H 1.08009 * 120.00181 * 179.97438 * 23 22 21 43 43 H 1.07993 * 120.00238 * 179.72395 * 24 23 22 44 44 H 1.07994 * 120.00251 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5861 1.9884 -0.8270 5 6 3.5386 1.4455 -0.1587 6 1 4.1656 1.8102 0.6416 7 6 4.1094 0.9825 -1.3252 8 7 5.4039 0.7576 -1.3798 9 14 3.0437 0.6749 -2.8283 10 1 3.0440 1.8836 -3.6911 11 1 3.5853 -0.4782 -3.5915 12 1 1.6547 0.3748 -2.3973 13 7 1.6807 2.0889 1.2692 14 6 0.4532 2.8831 1.1266 15 6 0.8015 4.2649 0.5696 16 1 1.3799 4.1517 -0.3474 17 6 1.6266 5.0372 1.6009 18 8 2.8932 4.3983 1.7728 19 6 -0.4869 5.0330 0.2685 20 6 -0.1473 6.3437 -0.3933 21 6 -0.0542 6.4189 -1.7705 22 6 0.2568 7.6212 -2.3775 23 6 0.4742 8.7484 -1.6075 24 6 0.3862 8.6721 -0.2301 25 6 0.0707 7.4708 0.3768 26 1 -0.3634 -1.0269 0.0407 27 1 -0.3633 0.5487 0.8689 28 1 -0.3633 0.4783 -0.9096 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 5.8054 0.4315 -2.2005 32 1 1.5871 1.4080 2.0079 33 1 -0.0234 2.9935 2.1006 34 1 -0.2294 2.3775 0.4434 35 1 1.7794 6.0587 1.2527 36 1 1.0957 5.0534 2.5526 37 1 3.4701 4.8348 2.4144 38 1 -1.0221 5.2237 1.1987 39 1 -1.1152 4.4418 -0.3976 40 1 -0.2245 5.5383 -2.3721 41 1 0.3300 7.6799 -3.4535 42 1 0.7176 9.6878 -2.0818 43 1 0.5604 9.5517 0.3717 44 1 -0.0020 7.4120 1.4527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -26.569742 kcal Electronic energy + Delta-G solvation = -22300.984420 eV Core-core repulsion = 19218.047022 eV Total energy + Delta-G solvation = -3082.937398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.47886 -37.55891 -35.85840 -34.14111 -32.18047 -31.28872 -30.88643 -29.47787 -27.34055 -25.65769 -24.06525 -22.56177 -22.26965 -21.16839 -20.18689 -19.13609 -16.92061 -16.62635 -16.54589 -15.35138 -15.19187 -14.94406 -14.68336 -14.49633 -13.86396 -13.47056 -13.32570 -12.99758 -12.92959 -12.74758 -12.56635 -11.99778 -11.86690 -11.75935 -11.64399 -11.32005 -11.11430 -10.92687 -10.79140 -10.62819 -10.48151 -10.30406 -9.90060 -9.81568 -9.29899 -9.23690 -9.03606 -8.83994 -8.59365 -8.25512 -7.03172 -5.88741 -3.78680 1.39124 1.42656 3.35644 3.44408 3.46662 3.80482 4.56287 4.75993 4.78856 4.90675 5.00571 5.11180 5.19272 5.37448 5.39174 5.48290 5.53892 5.68576 5.75040 5.79435 5.85405 5.86740 5.91752 5.94025 6.04782 6.07289 6.08795 6.15788 6.29141 6.35650 6.48540 6.53090 6.55592 6.65792 6.67699 6.81004 6.92234 6.98438 7.04164 7.32313 7.94603 8.16935 8.46918 8.58308 8.93427 9.33945 9.78723 11.25548 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.005431 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.133617 B = 5154.303523 C = 5548.739201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.196 3.804 4 H 0.021 0.979 5 C -0.477 4.477 6 H 0.083 0.917 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.854 3.146 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.254 1.254 13 N -0.648 5.648 14 C 0.065 3.935 15 C -0.079 4.079 16 H 0.085 0.915 17 C 0.094 3.906 18 O -0.519 6.519 19 C -0.077 4.077 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.118 4.118 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.323 0.677 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.025 0.975 37 H 0.354 0.646 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 12.331 3.582 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.194 4.194 3 C 0.086 3.914 4 H 0.039 0.961 5 C -0.516 4.516 6 H 0.101 0.899 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.682 3.318 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.178 1.178 13 N -0.277 5.277 14 C -0.065 4.065 15 C -0.098 4.098 16 H 0.103 0.897 17 C 0.015 3.985 18 O -0.319 6.319 19 C -0.115 4.115 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.197 0.803 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.443 12.380 2.911 18.505 hybrid contribution -0.894 -0.460 -0.733 1.244 sum -14.337 11.919 2.178 18.771 Atomic orbital electron populations 1.21979 0.98760 0.99935 1.00511 1.22719 0.92634 1.02283 1.01772 1.19564 0.96794 0.87525 0.87470 0.96143 1.21032 0.89345 1.39173 1.02033 0.89877 1.24908 0.94597 0.95565 0.98382 1.69945 1.10681 1.46644 1.27048 0.87388 0.82368 0.77670 0.84373 1.21095 1.21735 1.17808 1.60386 1.31227 1.28338 1.07719 1.21965 0.92280 0.93877 0.98388 1.21162 0.93905 0.94538 1.00209 0.89661 1.21977 0.86240 0.94085 0.96172 1.87077 1.26000 1.54284 1.64580 1.20645 0.97876 0.92777 1.00213 1.19933 0.98324 0.95205 0.93662 1.21110 0.99981 0.97845 0.94386 1.21135 0.99637 0.92985 0.99814 1.21092 1.01186 0.98426 0.94082 1.21095 1.00308 0.97670 0.94862 1.21029 1.00500 0.92505 0.99553 0.94243 0.93432 0.93787 0.92202 0.92611 0.93151 0.85966 0.93222 0.95309 0.95115 0.95710 0.80255 0.91151 0.90725 0.86080 0.86271 0.86455 0.86378 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.80 37.16 0.33 -2.39 16 2 C -0.15 -3.33 4.49 -26.73 -0.12 -3.45 16 3 C 0.20 4.59 1.49 -68.87 -0.10 4.49 16 4 H 0.02 0.51 5.82 -51.93 -0.30 0.21 16 5 C -0.48 -13.70 9.29 -34.44 -0.32 -14.02 16 6 H 0.08 2.68 8.06 -52.48 -0.42 2.26 16 7 C 0.07 1.92 5.36 -17.82 -0.10 1.83 16 8 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 9 Si 0.85 21.73 25.73 -169.99 -4.37 17.35 16 10 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.25 -6.00 5.33 56.52 0.30 -5.69 16 13 N -0.65 -13.12 4.53 -107.96 -0.49 -13.61 16 14 C 0.07 1.09 4.26 -3.83 -0.02 1.07 16 15 C -0.08 -1.28 2.25 -90.62 -0.20 -1.48 16 16 H 0.09 1.73 7.50 -51.93 -0.39 1.34 16 17 C 0.09 1.45 6.17 37.16 0.23 1.68 16 18 O -0.52 -9.69 12.11 -35.23 -0.43 -10.12 16 19 C -0.08 -0.98 4.84 -27.88 -0.13 -1.12 16 20 C -0.07 -0.93 4.72 -104.62 -0.49 -1.42 16 21 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 22 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 23 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.39 7.86 -39.58 -0.31 -1.70 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.76 6.13 -51.93 -0.32 0.44 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.39 4.75 -51.93 -0.25 1.14 16 30 H 0.06 1.18 7.99 -51.93 -0.42 0.77 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.32 6.22 8.28 -39.29 -0.33 5.90 16 33 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.03 0.48 5.75 -51.93 -0.30 0.18 16 35 H 0.03 0.45 5.82 -51.93 -0.30 0.15 16 36 H 0.02 0.34 8.13 -51.93 -0.42 -0.09 16 37 H 0.35 5.06 9.12 45.56 0.42 5.47 16 38 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.21 7.96 -52.49 -0.42 0.79 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -32.94 341.72 -8.67 -41.61 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.48 Total: 11.10 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.82 Total: -23.82 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.28 Total: -41.28 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.43 Total: -10.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.37 Total: 17.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.94 -8.67 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.041 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds