Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47303 * 2 1 4 4 H 1.08994 * 109.47442 * 305.60411 * 3 2 1 5 5 C 1.50707 * 109.47274 * 185.60414 * 3 2 1 6 6 H 1.07994 * 120.00170 * 245.40672 * 5 3 2 7 7 C 1.37874 * 119.99600 * 65.40257 * 5 3 2 8 8 N 1.31517 * 119.99851 * 197.21632 * 7 5 3 9 9 Si 1.86806 * 120.00318 * 17.22493 * 7 5 3 10 10 H 1.48499 * 109.46974 * 86.80069 * 9 7 5 11 11 H 1.48496 * 109.47111 * 206.80323 * 9 7 5 12 12 H 1.48507 * 109.46686 * 326.80333 * 9 7 5 13 13 N 1.46904 * 109.47288 * 65.60714 * 3 2 1 14 14 C 1.46902 * 110.99812 * 251.62743 * 13 3 2 15 15 C 1.53000 * 109.46810 * 183.53293 * 14 13 3 16 16 H 1.09000 * 109.46985 * 304.99510 * 15 14 13 17 17 C 1.52992 * 109.47409 * 64.99512 * 15 14 13 18 18 O 1.42904 * 109.47131 * 185.00099 * 17 15 14 19 19 C 1.53002 * 109.46833 * 184.99995 * 15 14 13 20 20 C 1.50699 * 109.46826 * 174.99706 * 19 15 14 21 21 C 1.38235 * 120.00360 * 269.72086 * 20 19 15 22 22 C 1.38235 * 120.00250 * 179.76929 * 21 20 19 23 23 C 1.38231 * 119.99903 * 0.50327 * 22 21 20 24 24 C 1.38236 * 119.99820 * 359.75550 * 23 22 21 25 25 C 1.38234 * 120.00337 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47048 * 185.15923 * 1 2 3 27 27 H 1.09003 * 109.46806 * 65.15788 * 1 2 3 28 28 H 1.09002 * 109.46930 * 305.15554 * 1 2 3 29 29 H 1.09000 * 109.46987 * 120.00571 * 2 1 3 30 30 H 1.09002 * 109.47024 * 239.99884 * 2 1 3 31 31 H 0.97005 * 119.99766 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99566 * 15.57442 * 13 3 2 33 33 H 1.09005 * 109.46693 * 303.52432 * 14 13 3 34 34 H 1.08992 * 109.47429 * 63.52993 * 14 13 3 35 35 H 1.09006 * 109.47476 * 304.99955 * 17 15 14 36 36 H 1.09002 * 109.47459 * 65.00072 * 17 15 14 37 37 H 0.96700 * 114.00048 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46838 * 294.98991 * 19 15 14 39 39 H 1.08994 * 109.47183 * 54.99516 * 19 15 14 40 40 H 1.08001 * 119.99431 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.99825 * 180.23424 * 22 21 20 42 42 H 1.07997 * 119.99808 * 179.72374 * 23 22 21 43 43 H 1.08003 * 119.99593 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00060 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5972 1.9844 -0.8355 5 6 3.5407 1.4447 -0.1388 6 1 4.1573 1.8068 0.6705 7 6 4.1264 0.9843 -1.2989 8 7 5.4022 0.6654 -1.3098 9 14 3.1078 0.8137 -2.8555 10 1 3.1000 2.1065 -3.5861 11 1 3.6974 -0.2399 -3.7199 12 1 1.7160 0.4390 -2.4977 13 7 1.6640 2.0948 1.2614 14 6 0.6037 3.0881 1.0446 15 6 0.3013 3.8068 2.3611 16 1 0.0581 3.0720 3.1285 17 6 1.5274 4.6118 2.7960 18 8 1.2872 5.1884 4.0813 19 6 -0.8861 4.7516 2.1652 20 6 -1.2620 5.3668 3.4885 21 6 -2.1936 4.7462 4.2996 22 6 -2.5349 5.3080 5.5156 23 6 -1.9523 6.4959 5.9159 24 6 -1.0247 7.1194 5.1025 25 6 -0.6792 6.5546 3.8890 26 1 -0.3633 -1.0235 0.0924 27 1 -0.3633 0.4318 -0.9326 28 1 -0.3633 0.5917 0.8402 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 5.8144 0.3418 -2.1261 32 1 1.3857 1.4136 1.9518 33 1 0.9328 3.8145 0.3015 34 1 -0.2965 2.5870 0.6891 35 1 2.3943 3.9531 2.8497 36 1 1.7174 5.4042 2.0721 37 1 2.0243 5.7145 4.4204 38 1 -0.6117 5.5391 1.4633 39 1 -1.7342 4.1923 1.7705 40 1 -2.6517 3.8201 3.9850 41 1 -3.2600 4.8211 6.1509 42 1 -2.2223 6.9372 6.8640 43 1 -0.5698 8.0477 5.4151 44 1 0.0452 7.0420 3.2533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -33.698602 kcal Electronic energy + Delta-G solvation = -21834.470461 eV Core-core repulsion = 18751.223933 eV Total energy + Delta-G solvation = -3083.246528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.43239 -37.56843 -36.29656 -34.28136 -32.31246 -31.52346 -30.72252 -29.62269 -27.29948 -25.72573 -24.14049 -22.46266 -22.38582 -21.15352 -20.24883 -19.51540 -17.11948 -16.63910 -16.57586 -15.65480 -15.38586 -14.88135 -14.71615 -14.35654 -13.96328 -13.77686 -13.29341 -13.23123 -12.86418 -12.61294 -12.57066 -12.37585 -11.96040 -11.90305 -11.73537 -11.51019 -11.06353 -10.91541 -10.87417 -10.81922 -10.58078 -10.30830 -10.27529 -9.92894 -9.70530 -9.50332 -9.34050 -8.68882 -8.38083 -8.29974 -7.33769 -6.06685 -3.97044 1.53206 1.60936 3.27301 3.36296 3.38451 3.95010 4.43393 4.51445 4.80365 4.93594 5.03854 5.12173 5.19899 5.21281 5.21892 5.49396 5.58907 5.62552 5.67134 5.75961 5.82338 5.82983 5.87061 5.94443 6.01098 6.05686 6.13589 6.18536 6.21078 6.40865 6.46667 6.52312 6.58273 6.61358 6.64360 6.74820 6.84968 6.88286 7.17890 7.18734 7.78364 7.89304 7.93969 8.32558 8.72988 9.11558 9.60969 11.06811 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.003821 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.287022 B = 7326.095310 C = 7755.726475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.194 3.806 4 H 0.019 0.981 5 C -0.499 4.499 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.257 1.257 13 N -0.672 5.672 14 C 0.062 3.938 15 C -0.073 4.073 16 H 0.073 0.927 17 C 0.083 3.917 18 O -0.565 6.565 19 C -0.077 4.077 20 C -0.060 4.060 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.062 4.062 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.326 0.674 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.366 0.634 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 9.729 9.949 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.085 3.915 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.182 1.182 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.092 4.092 16 H 0.091 0.909 17 C 0.006 3.994 18 O -0.370 6.370 19 C -0.114 4.114 20 C -0.060 4.060 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.080 4.080 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.212 0.788 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.428 9.804 9.704 19.961 hybrid contribution -0.568 -0.544 -1.089 1.344 sum -14.996 9.260 8.614 19.617 Atomic orbital electron populations 1.21948 0.98578 1.00204 1.00567 1.22536 0.92611 1.01446 1.02049 1.19542 0.96644 0.88397 0.86918 0.96321 1.20993 0.89192 1.41350 1.02186 0.90258 1.24909 0.94725 0.94718 0.98672 1.69992 1.11944 1.43491 1.27729 0.87289 0.81818 0.77922 0.84460 1.20631 1.21561 1.18197 1.60617 1.38840 1.18829 1.11884 1.22043 0.93593 0.95685 0.95455 1.21146 0.93491 0.96663 0.97893 0.90856 1.22163 0.97986 0.95649 0.83628 1.86697 1.43740 1.70877 1.35658 1.20650 0.98116 0.98689 0.93990 1.19673 0.95486 0.94672 0.96213 1.20953 0.98410 0.99621 0.94755 1.20973 1.00736 0.96459 0.96646 1.20985 0.98112 0.96163 0.99440 1.21001 0.98712 1.00030 0.95184 1.20749 0.96639 0.94694 0.95959 0.93931 0.93742 0.93534 0.92318 0.92063 0.92820 0.85659 0.91304 0.95635 0.91477 0.94487 0.78846 0.91228 0.91411 0.86885 0.86920 0.87028 0.86916 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.15 -3.05 4.56 -26.73 -0.12 -3.18 16 3 C 0.19 4.35 1.73 -68.86 -0.12 4.23 16 4 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 5 C -0.50 -13.74 9.25 -34.44 -0.32 -14.05 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.02 5.30 -17.82 -0.09 1.93 16 8 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.86 20.86 25.86 -169.99 -4.40 16.47 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.26 -5.86 5.65 56.52 0.32 -5.55 16 13 N -0.67 -12.85 5.41 -107.95 -0.58 -13.44 16 14 C 0.06 0.99 4.47 -3.82 -0.02 0.98 16 15 C -0.07 -1.01 2.39 -90.62 -0.22 -1.22 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.08 1.15 6.24 37.15 0.23 1.38 16 18 O -0.56 -7.10 9.04 -35.23 -0.32 -7.42 16 19 C -0.08 -0.93 4.84 -27.88 -0.14 -1.07 16 20 C -0.06 -0.75 4.26 -104.62 -0.45 -1.20 16 21 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 22 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.06 -0.73 6.62 -39.58 -0.26 -0.99 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 29 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 30 H 0.06 1.37 5.17 -51.93 -0.27 1.10 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.33 5.90 7.71 -39.29 -0.30 5.60 16 33 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 34 H 0.03 0.39 6.60 -51.93 -0.34 0.05 16 35 H 0.07 1.08 7.62 -51.93 -0.40 0.69 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.37 3.38 9.12 45.56 0.42 3.79 16 38 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.11 1.23 7.80 -52.49 -0.41 0.82 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -30.35 342.70 -8.72 -39.07 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.63 Total: 9.19 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.73 Total: -22.80 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.19 Total: -39.69 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.32 Total: -7.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.40 Total: 16.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.35 -8.72 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.374 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds