Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46491 * 305.61409 * 3 2 1 5 5 C 1.50698 * 109.47385 * 185.61254 * 3 2 1 6 6 H 1.08000 * 119.99518 * 245.40439 * 5 3 2 7 7 C 1.37871 * 119.99907 * 65.40230 * 5 3 2 8 8 N 1.31518 * 119.99983 * 197.21387 * 7 5 3 9 9 Si 1.86794 * 120.00278 * 17.21975 * 7 5 3 10 10 H 1.48504 * 109.47312 * 86.80793 * 9 7 5 11 11 H 1.48503 * 109.47282 * 206.80776 * 9 7 5 12 12 H 1.48506 * 109.47301 * 326.80974 * 9 7 5 13 13 N 1.46903 * 109.46778 * 65.60986 * 3 2 1 14 14 C 1.46902 * 110.99762 * 251.63222 * 13 3 2 15 15 C 1.50706 * 109.46807 * 183.50878 * 14 13 3 16 16 C 1.38289 * 119.94489 * 259.72575 * 15 14 13 17 17 C 1.38117 * 120.05401 * 179.72397 * 16 15 14 18 18 C 1.50702 * 120.03072 * 180.27404 * 17 16 15 19 19 C 1.38756 * 119.94401 * 0.55540 * 17 16 15 20 20 O 1.35896 * 120.05676 * 179.74688 * 19 17 16 21 21 C 1.42901 * 117.00172 * 179.97438 * 20 19 17 22 22 C 1.38708 * 119.88839 * 359.72111 * 19 17 16 23 23 C 1.38170 * 119.94484 * 0.02562 * 22 19 17 24 24 C 1.50700 * 119.97143 * 180.02562 * 23 22 19 25 25 H 1.08997 * 109.46981 * 185.14621 * 1 2 3 26 26 H 1.08996 * 109.47195 * 65.14637 * 1 2 3 27 27 H 1.09000 * 109.47007 * 305.14153 * 1 2 3 28 28 H 1.08997 * 109.47098 * 120.00240 * 2 1 3 29 29 H 1.09007 * 109.46956 * 239.99986 * 2 1 3 30 30 H 0.96998 * 120.00199 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99850 * 15.58457 * 13 3 2 32 32 H 1.08993 * 109.47644 * 303.50919 * 14 13 3 33 33 H 1.09001 * 109.47321 * 63.51557 * 14 13 3 34 34 H 1.08005 * 119.97217 * 0.02562 * 16 15 14 35 35 H 1.08997 * 109.47452 * 270.27834 * 18 17 16 36 36 H 1.09007 * 109.46748 * 30.28004 * 18 17 16 37 37 H 1.09001 * 109.47108 * 150.27399 * 18 17 16 38 38 H 1.09003 * 109.46591 * 299.99545 * 21 20 19 39 39 H 1.08993 * 109.47167 * 59.99899 * 21 20 19 40 40 H 1.09000 * 109.47573 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.02776 * 179.97438 * 22 19 17 42 42 H 1.08992 * 109.47112 * 269.97484 * 24 23 22 43 43 H 1.08997 * 109.47465 * 29.98518 * 24 23 22 44 44 H 1.08999 * 109.46746 * 149.97898 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 3.5407 1.4447 -0.1390 6 1 4.1573 1.8069 0.6704 7 6 4.1262 0.9844 -1.2992 8 7 5.4021 0.6655 -1.3102 9 14 3.1075 0.8138 -2.8555 10 1 3.0997 2.1065 -3.5863 11 1 3.6970 -0.2400 -3.7201 12 1 1.7157 0.4391 -2.4977 13 7 1.6641 2.0947 1.2614 14 6 0.6037 3.0880 1.0448 15 6 0.3054 3.7953 2.3417 16 6 -0.7941 3.4238 3.0936 17 6 -1.0663 4.0666 4.2853 18 6 -2.2612 3.6571 5.1074 19 6 -0.2421 5.0938 4.7222 20 8 -0.5108 5.7313 5.8919 21 6 0.3808 6.7786 6.2796 22 6 0.8569 5.4684 3.9634 23 6 1.1279 4.8187 2.7745 24 6 2.3221 5.2248 1.9498 25 1 -0.3633 -1.0235 0.0922 26 1 -0.3633 0.4319 -0.9324 27 1 -0.3633 0.5915 0.8404 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8142 0.3420 -2.1265 31 1 1.3859 1.4135 1.9518 32 1 0.9326 3.8146 0.3020 33 1 -0.2965 2.5868 0.6890 34 1 -1.4377 2.6269 2.7511 35 1 -3.1301 4.2393 4.8006 36 1 -2.4616 2.5967 4.9538 37 1 -2.0560 3.8390 6.1623 38 1 1.3878 6.3762 6.3900 39 1 0.3819 7.5562 5.5159 40 1 0.0531 7.2020 7.2291 41 1 1.4997 6.2679 4.3011 42 1 2.0295 6.0039 1.2459 43 1 3.1052 5.6037 2.6064 44 1 2.6952 4.3604 1.4005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -24.481449 kcal Electronic energy + Delta-G solvation = -21892.915416 eV Core-core repulsion = 18810.068574 eV Total energy + Delta-G solvation = -3082.846842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26049 -38.04569 -36.42620 -33.79441 -32.50880 -31.62301 -29.73446 -28.97484 -27.81183 -27.14513 -24.83588 -23.79977 -22.37332 -21.66181 -20.10009 -19.76558 -17.36591 -16.70972 -16.50480 -15.80485 -15.10702 -15.02856 -14.41659 -14.12892 -13.96401 -13.64668 -13.60110 -13.10728 -12.81484 -12.70230 -12.63688 -12.36168 -12.04871 -11.89017 -11.77536 -11.74483 -11.63964 -11.44869 -11.12510 -10.83679 -10.69202 -10.54025 -10.50623 -10.26052 -9.90943 -9.50266 -9.31846 -8.50784 -8.35163 -7.79292 -7.28579 -6.04299 -3.94576 1.50576 1.60071 3.28536 3.29227 3.38187 3.40533 3.85224 4.45605 4.84268 4.89755 4.99887 5.05023 5.11385 5.22070 5.31223 5.36785 5.39368 5.42729 5.63746 5.68735 5.73741 5.78023 5.85476 5.91176 5.94655 6.01873 6.03075 6.06907 6.18098 6.28096 6.50780 6.51413 6.55990 6.59635 6.75452 6.78607 6.89260 6.97939 7.03764 7.21676 7.47645 7.80879 7.97230 8.36636 8.75775 9.14662 9.63469 11.09166 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.004321 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.429699 B = 6478.495939 C = 7185.541352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.857 3.143 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.257 1.257 13 N -0.665 5.665 14 C 0.099 3.901 15 C -0.104 4.104 16 C -0.078 4.078 17 C -0.129 4.129 18 C -0.099 4.099 19 C 0.119 3.881 20 O -0.319 6.319 21 C 0.029 3.971 22 C -0.209 4.209 23 C -0.020 4.020 24 C -0.127 4.127 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 8.962 10.937 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.084 3.916 4 H 0.037 0.963 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.182 1.182 13 N -0.295 5.295 14 C -0.030 4.030 15 C -0.105 4.105 16 C -0.096 4.096 17 C -0.130 4.130 18 C -0.156 4.156 19 C 0.074 3.926 20 O -0.233 6.233 21 C -0.067 4.067 22 C -0.228 4.228 23 C -0.021 4.021 24 C -0.183 4.183 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.778 9.321 10.912 19.215 hybrid contribution -0.914 -0.526 -1.157 1.565 sum -13.693 8.795 9.755 18.974 Atomic orbital electron populations 1.21949 0.98602 1.00193 1.00575 1.22536 0.92603 1.01453 1.02038 1.19578 0.96685 0.88417 0.86920 0.96269 1.20990 0.89141 1.41303 1.02161 0.90163 1.24895 0.94697 0.94734 0.98629 1.69990 1.11944 1.43535 1.27691 0.87306 0.81842 0.77908 0.84512 1.20635 1.21615 1.18190 1.60632 1.38462 1.18647 1.11746 1.20939 0.93682 0.95378 0.93037 1.19778 0.95298 0.97382 0.98047 1.20758 0.96945 0.98841 0.93086 1.19095 0.98888 0.97710 0.97293 1.20538 0.94931 1.00829 0.99324 1.18748 0.94541 0.93436 0.85826 1.86012 1.52033 1.48527 1.36690 1.22995 0.93921 0.89101 1.00650 1.21076 0.99532 1.04431 0.97719 1.19593 0.95459 0.93430 0.93603 1.20980 0.94506 1.03508 0.99333 0.93945 0.93726 0.93533 0.92316 0.92064 0.92853 0.85494 0.90580 0.95578 0.85900 0.91945 0.91972 0.91562 0.92716 0.92862 0.88643 0.85862 0.91855 0.92293 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.44 37.16 0.35 -2.30 16 2 C -0.15 -3.06 4.56 -26.73 -0.12 -3.18 16 3 C 0.19 4.34 1.73 -68.86 -0.12 4.22 16 4 H 0.02 0.45 6.15 -51.93 -0.32 0.13 16 5 C -0.50 -13.65 9.25 -34.44 -0.32 -13.97 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 2.03 5.30 -17.82 -0.09 1.94 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 9 Si 0.86 20.85 25.86 -169.99 -4.40 16.46 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -5.87 5.65 56.52 0.32 -5.55 16 13 N -0.66 -13.04 5.36 -109.22 -0.59 -13.63 16 14 C 0.10 1.67 4.33 -4.97 -0.02 1.65 16 15 C -0.10 -1.63 5.43 -104.60 -0.57 -2.20 16 16 C -0.08 -1.10 9.32 -39.61 -0.37 -1.47 16 17 C -0.13 -1.77 5.89 -104.47 -0.62 -2.39 16 18 C -0.10 -1.10 9.79 36.01 0.35 -0.75 16 19 C 0.12 1.66 6.66 -39.22 -0.26 1.40 16 20 O -0.32 -3.97 9.54 -19.41 -0.19 -4.15 16 21 C 0.03 0.25 9.81 101.05 0.99 1.24 16 22 C -0.21 -2.92 8.69 -39.43 -0.34 -3.26 16 23 C -0.02 -0.31 5.88 -104.65 -0.62 -0.93 16 24 C -0.13 -1.93 9.26 36.01 0.33 -1.60 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 28 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 29 H 0.06 1.37 5.17 -51.93 -0.27 1.10 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.33 6.16 7.71 -39.29 -0.30 5.86 16 32 H 0.08 1.34 7.20 -51.93 -0.37 0.97 16 33 H 0.03 0.42 6.46 -51.93 -0.34 0.08 16 34 H 0.12 1.53 8.03 -52.48 -0.42 1.11 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.09 -51.92 -0.42 0.19 16 37 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.10 1.92 6.33 -51.93 -0.33 1.59 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -30.08 343.41 -7.83 -37.91 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.19 Total: 6.06 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.42 Total: -21.59 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.19 Total: -39.85 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.19 Total: -4.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.40 Total: 16.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.08 -7.83 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.425 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds