Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46491 * 305.61409 * 3 2 1 5 5 C 1.50698 * 109.47385 * 185.61254 * 3 2 1 6 6 H 1.08000 * 119.99518 * 245.40439 * 5 3 2 7 7 C 1.37871 * 119.99907 * 65.40230 * 5 3 2 8 8 N 1.31518 * 119.99983 * 197.21387 * 7 5 3 9 9 Si 1.86794 * 120.00278 * 17.21975 * 7 5 3 10 10 H 1.48504 * 109.47312 * 86.80793 * 9 7 5 11 11 H 1.48503 * 109.47282 * 206.80776 * 9 7 5 12 12 H 1.48506 * 109.47301 * 326.80974 * 9 7 5 13 13 N 1.46903 * 109.46778 * 65.60986 * 3 2 1 14 14 C 1.46902 * 110.99762 * 251.63222 * 13 3 2 15 15 C 1.50706 * 109.46807 * 183.50878 * 14 13 3 16 16 C 1.38289 * 119.94489 * 259.72575 * 15 14 13 17 17 C 1.38117 * 120.05401 * 179.72397 * 16 15 14 18 18 C 1.50702 * 120.03072 * 180.27404 * 17 16 15 19 19 C 1.38756 * 119.94401 * 0.55540 * 17 16 15 20 20 O 1.35896 * 120.05676 * 179.74688 * 19 17 16 21 21 C 1.42901 * 117.00172 * 179.97438 * 20 19 17 22 22 C 1.38708 * 119.88839 * 359.72111 * 19 17 16 23 23 C 1.38170 * 119.94484 * 0.02562 * 22 19 17 24 24 C 1.50700 * 119.97143 * 180.02562 * 23 22 19 25 25 H 1.08997 * 109.46981 * 185.14621 * 1 2 3 26 26 H 1.08996 * 109.47195 * 65.14637 * 1 2 3 27 27 H 1.09000 * 109.47007 * 305.14153 * 1 2 3 28 28 H 1.08997 * 109.47098 * 120.00240 * 2 1 3 29 29 H 1.09007 * 109.46956 * 239.99986 * 2 1 3 30 30 H 0.96998 * 120.00199 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99850 * 15.58457 * 13 3 2 32 32 H 1.08993 * 109.47644 * 303.50919 * 14 13 3 33 33 H 1.09001 * 109.47321 * 63.51557 * 14 13 3 34 34 H 1.08005 * 119.97217 * 0.02562 * 16 15 14 35 35 H 1.08997 * 109.47452 * 270.27834 * 18 17 16 36 36 H 1.09007 * 109.46748 * 30.28004 * 18 17 16 37 37 H 1.09001 * 109.47108 * 150.27399 * 18 17 16 38 38 H 1.09003 * 109.46591 * 299.99545 * 21 20 19 39 39 H 1.08993 * 109.47167 * 59.99899 * 21 20 19 40 40 H 1.09000 * 109.47573 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.02776 * 179.97438 * 22 19 17 42 42 H 1.08992 * 109.47112 * 269.97484 * 24 23 22 43 43 H 1.08997 * 109.47465 * 29.98518 * 24 23 22 44 44 H 1.08999 * 109.46746 * 149.97898 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 3.5407 1.4447 -0.1390 6 1 4.1573 1.8069 0.6704 7 6 4.1262 0.9844 -1.2992 8 7 5.4021 0.6655 -1.3102 9 14 3.1075 0.8138 -2.8555 10 1 3.0997 2.1065 -3.5863 11 1 3.6970 -0.2400 -3.7201 12 1 1.7157 0.4391 -2.4977 13 7 1.6641 2.0947 1.2614 14 6 0.6037 3.0880 1.0448 15 6 0.3054 3.7953 2.3417 16 6 -0.7941 3.4238 3.0936 17 6 -1.0663 4.0666 4.2853 18 6 -2.2612 3.6571 5.1074 19 6 -0.2421 5.0938 4.7222 20 8 -0.5108 5.7313 5.8919 21 6 0.3808 6.7786 6.2796 22 6 0.8569 5.4684 3.9634 23 6 1.1279 4.8187 2.7745 24 6 2.3221 5.2248 1.9498 25 1 -0.3633 -1.0235 0.0922 26 1 -0.3633 0.4319 -0.9324 27 1 -0.3633 0.5915 0.8404 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8142 0.3420 -2.1265 31 1 1.3859 1.4135 1.9518 32 1 0.9326 3.8146 0.3020 33 1 -0.2965 2.5868 0.6890 34 1 -1.4377 2.6269 2.7511 35 1 -3.1301 4.2393 4.8006 36 1 -2.4616 2.5967 4.9538 37 1 -2.0560 3.8390 6.1623 38 1 1.3878 6.3762 6.3900 39 1 0.3819 7.5562 5.5159 40 1 0.0531 7.2020 7.2291 41 1 1.4997 6.2679 4.3011 42 1 2.0295 6.0039 1.2459 43 1 3.1052 5.6037 2.6064 44 1 2.6952 4.3604 1.4005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = -42.964530 kcal Electronic energy + Delta-G solvation = -21893.716903 eV Core-core repulsion = 18810.068574 eV Total energy + Delta-G solvation = -3083.648329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28699 -39.19872 -37.91156 -34.96002 -34.33664 -33.17538 -31.02341 -30.03396 -29.15883 -28.32947 -26.12272 -25.06916 -23.97273 -22.75214 -21.68229 -21.07708 -18.77751 -18.32723 -17.58266 -16.81325 -16.64665 -16.43227 -15.81597 -15.65699 -15.00568 -14.83521 -14.78009 -14.63235 -14.19738 -13.99654 -13.73886 -13.61865 -13.40994 -13.29811 -13.14788 -12.76399 -12.68754 -12.60981 -12.60152 -12.49800 -12.26678 -11.90560 -11.66533 -11.60646 -11.53333 -11.32152 -11.25862 -10.49252 -9.57936 -8.95191 -8.79227 -8.23247 -6.17564 0.42786 0.49046 1.35673 1.39291 1.47411 2.39448 2.42634 2.74058 3.09491 3.69615 3.84906 3.92064 4.06999 4.22500 4.29367 4.35256 4.40474 4.40497 4.42347 4.51321 4.56875 4.71237 4.74716 4.75513 4.80067 4.83433 4.87086 4.89050 4.92042 4.98386 5.11444 5.18889 5.26318 5.27970 5.42370 5.52465 5.54276 5.56063 5.78986 5.86542 5.92130 6.12971 6.49854 6.74835 6.87878 6.88550 7.44788 8.94259 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.004321 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.429699 B = 6478.495939 C = 7185.541352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.200 3.800 4 H 0.019 0.981 5 C -0.500 4.500 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.229 1.229 13 N -0.674 5.674 14 C 0.107 3.893 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.137 4.137 18 C -0.096 4.096 19 C 0.115 3.885 20 O -0.327 6.327 21 C 0.019 3.981 22 C -0.213 4.213 23 C -0.038 4.038 24 C -0.120 4.120 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.262 0.738 31 H 0.333 0.667 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.437 9.296 11.496 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.090 3.910 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.152 1.152 13 N -0.305 5.305 14 C -0.022 4.022 15 C -0.122 4.122 16 C -0.095 4.095 17 C -0.138 4.138 18 C -0.153 4.153 19 C 0.070 3.930 20 O -0.241 6.241 21 C -0.075 4.075 22 C -0.231 4.231 23 C -0.039 4.039 24 C -0.177 4.177 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.947 9.669 11.497 21.909 hybrid contribution 0.120 -0.525 -1.142 1.262 sum -15.827 9.144 10.355 21.008 Atomic orbital electron populations 1.21850 0.94997 1.02069 1.01477 1.22386 0.95763 0.99331 1.00976 1.19340 0.93315 0.90056 0.88241 0.96287 1.21283 0.91808 1.40090 1.00708 0.95033 1.25712 0.95763 0.94614 1.02104 1.70142 1.14228 1.45659 1.28625 0.86231 0.81517 0.77771 0.79726 1.20370 1.21768 1.15168 1.60411 1.40577 1.18940 1.10584 1.20843 0.93123 0.94391 0.93808 1.19715 0.96483 0.98014 0.97994 1.20933 0.96500 0.99127 0.92988 1.19462 0.99595 0.97383 0.97350 1.20566 0.94130 1.01839 0.98762 1.18940 0.94324 0.93511 0.86246 1.86009 1.52996 1.49258 1.35838 1.23289 0.93692 0.88396 1.02129 1.21224 1.00002 1.04757 0.97140 1.19680 0.95591 0.94216 0.94382 1.20859 0.95028 1.02312 0.99483 0.91743 0.93319 0.92011 0.92941 0.93737 0.92892 0.84892 0.91902 0.93907 0.84068 0.90823 0.90639 0.91629 0.92516 0.92074 0.86028 0.84226 0.90731 0.91479 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.44 71.98 0.68 -3.79 16 2 C -0.15 -5.83 4.56 30.59 0.14 -5.69 16 3 C 0.20 8.96 1.73 44.17 0.08 9.04 16 4 H 0.02 0.87 6.15 -2.39 -0.01 0.85 16 5 C -0.50 -28.45 9.25 25.60 0.24 -28.21 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 7 C 0.02 0.87 5.30 84.65 0.45 1.32 16 8 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 9 Si 0.92 43.36 25.86 68.60 1.77 45.13 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.23 -9.61 5.65 99.48 0.56 -9.05 16 13 N -0.67 -26.44 5.36 -499.45 -2.68 -29.11 16 14 C 0.11 3.52 4.33 85.56 0.37 3.89 16 15 C -0.12 -3.67 5.43 -19.85 -0.11 -3.77 16 16 C -0.08 -2.01 9.32 22.25 0.21 -1.80 16 17 C -0.14 -3.45 5.89 -19.77 -0.12 -3.57 16 18 C -0.10 -1.86 9.79 71.24 0.70 -1.16 16 19 C 0.12 3.00 6.66 22.51 0.15 3.15 16 20 O -0.33 -7.42 9.54 -92.38 -0.88 -8.30 16 21 C 0.02 0.29 9.81 113.37 1.11 1.40 16 22 C -0.21 -5.67 8.69 22.37 0.19 -5.48 16 23 C -0.04 -1.15 5.88 -19.88 -0.12 -1.27 16 24 C -0.12 -3.73 9.26 71.24 0.66 -3.07 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.69 5.97 -2.39 -0.01 1.68 16 28 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 29 H 0.04 1.92 5.17 -2.38 -0.01 1.90 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.33 12.31 7.71 -89.69 -0.69 11.62 16 32 H 0.06 2.21 7.20 -2.39 -0.02 2.19 16 33 H 0.04 1.26 6.46 -2.39 -0.02 1.25 16 34 H 0.14 3.07 8.03 -2.91 -0.02 3.04 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 37 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 38 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 39 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.14 3.11 6.30 -2.91 -0.02 3.09 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 44 H 0.07 2.67 6.33 -2.39 -0.02 2.66 16 Total: -1.00 -67.24 343.41 3.30 -63.94 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.15 Total: 26.49 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 4.63 Total: -39.03 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.38 Total: -88.24 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.88 Total: -8.30 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.77 Total: 45.13 kcal Total: -67.24 3.30 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.978 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds