Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47065 * 2 1 4 4 H 1.08995 * 109.46941 * 54.67928 * 3 2 1 5 5 C 1.50701 * 109.47114 * 174.67984 * 3 2 1 6 6 H 1.08004 * 120.00291 * 116.86976 * 5 3 2 7 7 C 1.37881 * 119.99748 * 296.86703 * 5 3 2 8 8 N 1.31507 * 119.99991 * 351.86547 * 7 5 3 9 9 Si 1.86801 * 119.99718 * 171.86004 * 7 5 3 10 10 H 1.48496 * 109.47228 * 270.00017 * 9 7 5 11 11 H 1.48503 * 109.46946 * 30.00173 * 9 7 5 12 12 H 1.48500 * 109.46777 * 150.00192 * 9 7 5 13 13 N 1.46901 * 109.47021 * 294.67597 * 3 2 1 14 14 C 1.46901 * 110.99602 * 142.29913 * 13 3 2 15 15 C 1.53004 * 109.47232 * 294.72211 * 14 13 3 16 16 C 1.53000 * 109.47528 * 54.72453 * 14 13 3 17 17 C 1.50707 * 109.47010 * 174.73035 * 14 13 3 18 18 C 1.38287 * 119.96947 * 359.71938 * 17 14 13 19 19 C 1.38251 * 120.10954 * 179.72801 * 18 17 14 20 20 C 1.38170 * 120.05176 * 0.55513 * 19 18 17 21 21 C 1.38705 * 119.94473 * 359.72147 * 20 19 18 22 22 O 1.35905 * 120.05382 * 179.97438 * 21 20 19 23 23 C 1.42895 * 116.99767 * 0.02562 * 22 21 20 24 24 C 1.38118 * 119.97149 * 180.02562 * 17 14 13 25 25 H 1.09001 * 109.47117 * 65.08267 * 1 2 3 26 26 H 1.09005 * 109.47332 * 185.07996 * 1 2 3 27 27 H 1.08995 * 109.47347 * 305.07879 * 1 2 3 28 28 H 1.09005 * 109.47169 * 240.00001 * 2 1 3 29 29 H 1.09001 * 109.47333 * 120.00218 * 2 1 3 30 30 H 0.96996 * 120.00634 * 356.23918 * 8 7 5 31 31 H 1.00901 * 111.00419 * 266.24965 * 13 3 2 32 32 H 1.09010 * 109.46474 * 65.29152 * 15 14 13 33 33 H 1.09001 * 109.47387 * 185.28921 * 15 14 13 34 34 H 1.09001 * 109.47442 * 305.29367 * 15 14 13 35 35 H 1.09009 * 109.46616 * 58.88237 * 16 14 13 36 36 H 1.09001 * 109.46872 * 178.87656 * 16 14 13 37 37 H 1.08994 * 109.47101 * 298.88147 * 16 14 13 38 38 H 1.07995 * 119.94626 * 359.97438 * 18 17 14 39 39 H 1.07993 * 119.97215 * 180.25305 * 19 18 17 40 40 H 1.07996 * 120.02221 * 179.75031 * 20 19 18 41 41 H 1.09010 * 109.46958 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.47149 * 300.00161 * 23 22 21 43 43 H 1.08994 * 109.47113 * 60.00929 * 23 22 21 44 44 H 1.08004 * 120.03173 * 359.96799 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9830 0.8385 5 6 3.5412 1.4445 0.1317 6 1 4.1527 1.8420 -0.6649 7 6 4.1341 0.9390 1.2693 8 7 3.3937 0.6035 2.3030 9 14 5.9890 0.7306 1.3420 10 1 6.3548 -0.6219 0.8502 11 1 6.6364 1.7594 0.4889 12 1 6.4503 0.8889 2.7446 13 7 1.6580 2.0969 -1.2585 14 6 1.2860 3.4996 -1.0307 15 6 0.0211 3.5588 -0.1719 16 6 2.4269 4.2190 -0.3084 17 6 1.0263 4.1718 -2.3543 18 6 1.1617 3.4571 -3.5303 19 6 0.9187 4.0693 -4.7459 20 6 0.5510 5.4005 -4.7889 21 6 0.4201 6.1210 -3.6109 22 8 0.0590 7.4306 -3.6506 23 6 -0.1708 8.0013 -4.9404 24 6 0.6594 5.5028 -2.3919 25 1 -0.3633 0.4330 -0.9320 26 1 -0.3634 -1.0237 0.0910 27 1 -0.3634 0.5906 0.8409 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.4369 0.7621 2.2864 31 1 2.3967 2.0252 -1.9421 32 1 0.2354 3.1573 0.8187 33 1 -0.3083 4.5938 -0.0810 34 1 -0.7649 2.9672 -0.6414 35 1 3.3332 4.1597 -0.9113 36 1 2.1590 5.2647 -0.1571 37 1 2.6014 3.7452 0.6576 38 1 1.4538 2.4179 -3.4991 39 1 1.0211 3.5079 -5.6627 40 1 0.3652 5.8793 -5.7389 41 1 -0.4510 9.0489 -4.8295 42 1 0.7389 7.9301 -5.5365 43 1 -0.9752 7.4606 -5.4388 44 1 0.5581 6.0618 -1.4734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -21.361249 kcal Electronic energy + Delta-G solvation = -22436.722789 eV Core-core repulsion = 19354.011249 eV Total energy + Delta-G solvation = -3082.711540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17472 -38.49285 -36.53086 -34.04043 -31.57277 -30.75792 -29.55823 -28.92479 -27.20690 -26.56994 -25.63495 -23.16977 -22.45929 -21.94441 -19.95400 -18.84870 -17.70147 -17.02374 -16.13472 -15.75596 -15.70501 -14.88025 -14.31965 -13.76627 -13.72658 -13.59697 -13.38950 -12.98351 -12.91598 -12.46266 -12.30360 -12.18939 -11.92376 -11.74031 -11.56291 -11.22802 -11.06873 -11.00216 -10.74397 -10.70033 -10.65208 -10.36735 -10.15652 -10.11016 -9.79297 -9.56834 -8.79494 -8.56172 -8.27414 -8.02202 -7.30655 -6.31870 -4.07484 1.52262 1.66427 3.26776 3.43096 3.44326 3.60131 3.97345 4.52064 4.82532 4.92025 5.00516 5.04623 5.13197 5.25542 5.32226 5.36596 5.55176 5.65388 5.71321 5.82515 5.85803 6.15865 6.19679 6.22794 6.29047 6.30135 6.42446 6.48212 6.48949 6.53341 6.70583 6.74521 6.87278 6.92001 6.96634 6.98386 7.12365 7.23999 7.38636 7.48868 7.63216 7.97712 8.07912 8.48064 8.62679 8.85016 9.63100 11.01082 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023211 B = 0.004657 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.044615 B = 6010.708715 C = 6408.008817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.201 3.799 4 H 0.029 0.971 5 C -0.617 4.617 6 H 0.048 0.952 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.061 2.939 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.286 1.286 13 N -0.673 5.673 14 C 0.153 3.847 15 C -0.130 4.130 16 C -0.162 4.162 17 C -0.018 4.018 18 C -0.140 4.140 19 C -0.085 4.085 20 C -0.220 4.220 21 C 0.119 3.881 22 O -0.321 6.321 23 C 0.030 3.970 24 C -0.148 4.148 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.332 0.668 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 9.886 -12.200 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.093 3.907 4 H 0.047 0.953 5 C -0.656 4.656 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.890 3.110 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.212 1.212 13 N -0.303 5.303 14 C 0.061 3.939 15 C -0.187 4.187 16 C -0.220 4.220 17 C -0.019 4.019 18 C -0.158 4.158 19 C -0.103 4.103 20 C -0.239 4.239 21 C 0.074 3.926 22 O -0.235 6.235 23 C -0.065 4.065 24 C -0.167 4.167 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.207 9.238 -11.053 15.686 hybrid contribution -0.258 0.936 -1.207 1.550 sum -6.466 10.174 -12.260 17.194 Atomic orbital electron populations 1.21719 0.98471 0.98626 1.00746 1.21559 0.92695 0.99687 1.00808 1.19300 0.94004 0.90416 0.86948 0.95286 1.22576 0.92022 1.45454 1.05504 0.93369 1.25608 1.06301 0.93597 0.92300 1.70753 1.08392 1.44667 1.30582 0.83661 0.75162 0.76398 0.75776 1.21504 1.21713 1.21237 1.61041 1.45214 1.10852 1.13227 1.19651 0.94996 0.89406 0.89878 1.21870 0.96595 1.00483 0.99764 1.22493 0.98025 0.98732 1.02785 1.19840 0.94387 0.92054 0.95573 1.21123 1.02293 1.01155 0.91232 1.20925 0.97621 0.93793 0.98005 1.21105 1.09758 0.96265 0.96747 1.18929 0.96476 0.82936 0.94234 1.86051 1.83717 1.22781 1.30946 1.22980 1.00627 0.98806 0.84129 1.20206 1.06017 0.94744 0.95716 0.92895 0.95409 0.94442 0.93991 0.91892 0.91605 0.84923 0.91947 0.93262 0.92304 0.92976 0.94300 0.90105 0.84580 0.86199 0.86181 0.88603 0.92894 0.92894 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.74 37.16 0.36 -2.33 16 2 C -0.11 -2.47 5.29 -26.73 -0.14 -2.61 16 3 C 0.20 4.63 0.86 -68.87 -0.06 4.58 16 4 H 0.03 0.73 4.56 -51.93 -0.24 0.49 16 5 C -0.62 -15.94 6.89 -34.44 -0.24 -16.18 16 6 H 0.05 1.27 7.54 -52.48 -0.40 0.87 16 7 C 0.03 0.74 5.17 -17.82 -0.09 0.65 16 8 N -0.91 -26.00 12.78 55.43 0.71 -25.29 16 9 Si 1.06 24.61 29.91 -169.99 -5.08 19.52 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.67 -13.30 4.69 -95.41 -0.45 -13.75 16 14 C 0.15 2.75 0.78 -132.75 -0.10 2.65 16 15 C -0.13 -2.23 8.24 37.16 0.31 -1.93 16 16 C -0.16 -3.10 7.37 37.16 0.27 -2.83 16 17 C -0.02 -0.30 4.77 -104.64 -0.50 -0.79 16 18 C -0.14 -2.16 9.11 -39.56 -0.36 -2.52 16 19 C -0.09 -1.14 10.04 -39.60 -0.40 -1.54 16 20 C -0.22 -2.85 9.04 -39.43 -0.36 -3.21 16 21 C 0.12 1.71 6.69 -39.22 -0.26 1.45 16 22 O -0.32 -4.24 10.50 -19.44 -0.20 -4.44 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.15 -2.31 8.58 -39.43 -0.34 -2.65 16 25 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.59 6.16 -51.93 -0.32 1.27 16 30 H 0.27 7.76 6.18 -40.82 -0.25 7.51 16 31 H 0.33 6.71 6.56 -39.29 -0.26 6.45 16 32 H 0.06 1.16 6.45 -51.92 -0.33 0.83 16 33 H 0.05 0.75 7.22 -51.93 -0.37 0.38 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.04 0.66 7.35 -51.93 -0.38 0.28 16 37 H 0.08 1.79 6.10 -51.93 -0.32 1.47 16 38 H 0.14 2.13 6.27 -52.49 -0.33 1.80 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 41 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 43 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.13 1.91 7.06 -52.48 -0.37 1.54 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -28.16 339.44 -7.69 -35.85 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.86 Total: 9.01 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.91 Total: -26.01 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.26 Total: -39.04 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.44 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.16 -7.69 -35.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.489 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds