Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 H 1.09001 * 109.47192 * 303.48523 * 3 2 1 5 5 C 1.50699 * 109.47175 * 183.48564 * 3 2 1 6 6 H 1.07993 * 120.00066 * 240.00340 * 5 3 2 7 7 C 1.37875 * 119.99899 * 60.00151 * 5 3 2 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99970 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47100 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47010 * 119.99837 * 9 7 5 12 12 H 1.48503 * 109.47087 * 239.99797 * 9 7 5 13 13 N 1.46903 * 109.47265 * 63.48602 * 3 2 1 14 14 C 1.46898 * 111.00065 * 201.20698 * 13 3 2 15 15 H 1.08995 * 109.47049 * 328.17735 * 14 13 3 16 16 C 1.50701 * 109.47129 * 88.17704 * 14 13 3 17 17 C 1.38230 * 120.00124 * 39.72664 * 16 14 13 18 18 C 1.38240 * 120.00149 * 179.78641 * 17 16 14 19 19 C 1.38232 * 119.99407 * 0.43916 * 18 17 16 20 20 C 1.38230 * 120.00619 * 359.81466 * 19 18 17 21 21 C 1.38239 * 119.99975 * 359.97255 * 20 19 18 22 22 C 1.52997 * 109.46841 * 208.17772 * 14 13 3 23 23 C 1.53005 * 109.47359 * 60.42767 * 22 14 13 24 24 C 1.53003 * 109.47056 * 180.42926 * 22 14 13 25 25 O 1.42899 * 109.47366 * 300.42805 * 22 14 13 26 26 H 1.09000 * 109.47148 * 64.79330 * 1 2 3 27 27 H 1.08999 * 109.47049 * 184.79097 * 1 2 3 28 28 H 1.09004 * 109.46946 * 304.79091 * 1 2 3 29 29 H 1.09004 * 109.46952 * 240.00144 * 2 1 3 30 30 H 1.08996 * 109.46987 * 120.00098 * 2 1 3 31 31 H 0.96994 * 120.00451 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99957 * 77.24559 * 13 3 2 33 33 H 1.08003 * 120.00195 * 0.02562 * 17 16 14 34 34 H 1.07993 * 120.00475 * 180.27744 * 18 17 16 35 35 H 1.08004 * 119.99619 * 179.83336 * 19 18 17 36 36 H 1.08004 * 120.00824 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.00665 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47292 * 174.46049 * 23 22 14 39 39 H 1.08997 * 109.47078 * 54.45928 * 23 22 14 40 40 H 1.08999 * 109.47022 * 294.46074 * 23 22 14 41 41 H 1.09003 * 109.47014 * 299.99576 * 24 22 14 42 42 H 1.08999 * 109.47382 * 59.99777 * 24 22 14 43 43 H 1.09002 * 109.46749 * 180.02562 * 24 22 14 44 44 H 0.96706 * 114.00280 * 59.99545 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6266 1.9741 -0.8571 5 6 3.5446 1.4434 -0.0864 6 1 4.1304 1.8948 0.7006 7 6 4.1732 0.8679 -1.1702 8 7 3.4598 0.3177 -2.1284 9 14 6.0381 0.8696 -1.2776 10 1 6.6021 1.5461 -0.0822 11 1 6.5319 -0.5298 -1.3342 12 1 6.4627 1.5942 -2.5023 13 7 1.6204 2.1103 1.2393 14 6 1.6326 3.5706 1.0806 15 1 2.4210 3.8537 0.3832 16 6 0.3004 4.0290 0.5458 17 6 -0.8662 3.4474 1.0058 18 6 -2.0886 3.8709 0.5185 19 6 -2.1437 4.8698 -0.4354 20 6 -0.9769 5.4478 -0.8993 21 6 0.2453 5.0274 -0.4088 22 6 1.8915 4.2288 2.4373 23 6 3.2489 3.7717 2.9753 24 6 1.8936 5.7501 2.2740 25 8 0.8634 3.8498 3.3546 26 1 -0.3633 0.4377 -0.9298 27 1 -0.3633 -1.0241 0.0858 28 1 -0.3633 0.5864 0.8440 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9020 -0.0875 -2.8906 32 1 2.1976 1.8261 2.0166 33 1 -0.8230 2.6647 1.7488 34 1 -3.0002 3.4197 0.8811 35 1 -3.0985 5.1989 -0.8182 36 1 -1.0198 6.2280 -1.6449 37 1 1.1570 5.4786 -0.7714 38 1 3.4777 4.3145 3.8925 39 1 4.0206 3.9725 2.2322 40 1 3.2154 2.7025 3.1846 41 1 2.6779 6.0393 1.5743 42 1 0.9266 6.0758 1.8907 43 1 2.0785 6.2190 3.2405 44 1 0.8037 2.8966 3.5066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = -38.157908 kcal Electronic energy + Delta-G solvation = -23176.138757 eV Core-core repulsion = 20092.698858 eV Total energy + Delta-G solvation = -3083.439898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59563 -37.57366 -35.60268 -33.00896 -31.78219 -30.86037 -30.36281 -30.00046 -26.99240 -26.48084 -24.40803 -22.63676 -21.95668 -21.13341 -19.53152 -19.48092 -17.03594 -16.34398 -15.99288 -15.21483 -14.86947 -14.60762 -14.42269 -14.17708 -13.45517 -13.17179 -12.88662 -12.83262 -12.62501 -12.28536 -12.05115 -11.98896 -11.82106 -11.79361 -11.48931 -11.23508 -11.15674 -10.96502 -10.79836 -10.62443 -10.58953 -10.36495 -10.19213 -9.61291 -9.57236 -9.36598 -9.11031 -8.41580 -8.37224 -8.09078 -7.40016 -6.03770 -4.17059 1.87740 1.96498 3.21641 3.30929 3.32447 4.30964 4.34716 4.54777 5.04000 5.13217 5.21675 5.24026 5.38111 5.40147 5.51328 5.58957 5.72761 5.86043 5.98283 6.07490 6.11604 6.12694 6.23313 6.29436 6.38355 6.41981 6.47675 6.52078 6.53843 6.64594 6.70873 6.94168 7.00840 7.10762 7.19066 7.24598 7.40658 7.53423 7.57833 7.74110 7.98838 8.04748 8.11181 8.27715 8.57476 8.94766 9.50953 10.96398 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.006913 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.712726 B = 4049.344146 C = 4650.861737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.034 0.966 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.102 3.898 15 H 0.065 0.935 16 C -0.045 4.045 17 C -0.068 4.068 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.120 4.120 22 C 0.133 3.867 23 C -0.179 4.179 24 C -0.137 4.137 25 O -0.556 6.556 26 H 0.035 0.965 27 H 0.022 0.978 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 7.462 6.431 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.052 0.948 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.313 5.313 14 C -0.009 4.009 15 H 0.083 0.917 16 C -0.046 4.046 17 C -0.087 4.087 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.139 4.139 22 C 0.092 3.908 23 C -0.237 4.237 24 C -0.195 4.195 25 O -0.362 6.362 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.689 7.937 6.126 12.053 hybrid contribution 2.232 -0.562 -0.414 2.339 sum -4.457 7.375 5.712 10.338 Atomic orbital electron populations 1.21722 0.98894 0.98314 1.00562 1.21491 0.92155 0.99175 1.01617 1.19131 0.92349 0.90961 0.86302 0.94769 1.21884 0.92665 1.37923 1.06129 0.92776 1.24919 0.97821 0.95021 0.95641 1.69887 1.34805 1.37658 1.09646 0.86651 0.86304 0.77771 0.77914 1.19957 1.20976 1.21083 1.60935 1.58329 1.02906 1.09163 1.20969 0.93658 0.90730 0.95548 0.91670 1.19753 0.95255 0.94495 0.95053 1.20936 0.91030 0.98111 0.98582 1.21107 0.97805 0.98010 0.98281 1.20964 0.97642 0.97993 0.98560 1.20936 0.92726 1.00681 1.00560 1.21021 0.97440 0.97974 0.97416 1.21265 0.86664 0.94864 0.87995 1.22519 0.97721 1.01910 1.01526 1.21749 1.02694 0.93301 1.01708 1.86451 1.56012 1.28851 1.64914 0.94618 0.95841 0.92956 0.89241 0.95258 0.92929 0.85499 0.85585 0.87028 0.87208 0.87034 0.86895 0.92356 0.91384 0.91751 0.91522 0.91594 0.92472 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.85 37.16 0.37 -2.40 16 2 C -0.11 -2.44 5.44 -26.73 -0.15 -2.58 16 3 C 0.22 5.12 1.82 -68.86 -0.13 4.99 16 4 H 0.03 0.92 7.79 -51.93 -0.40 0.52 16 5 C -0.55 -13.91 8.09 -34.44 -0.28 -14.19 16 6 H 0.05 1.36 7.79 -52.49 -0.41 0.95 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.38 11.30 55.43 0.63 -23.75 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -12.75 4.05 -102.17 -0.41 -13.16 16 14 C 0.10 1.78 1.44 -68.87 -0.10 1.68 16 15 H 0.07 1.32 7.32 -51.93 -0.38 0.94 16 16 C -0.04 -0.77 3.77 -104.62 -0.39 -1.17 16 17 C -0.07 -1.14 8.46 -39.58 -0.34 -1.47 16 18 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 19 C -0.13 -1.94 10.05 -39.59 -0.40 -2.33 16 20 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 21 C -0.12 -1.98 8.70 -39.58 -0.34 -2.33 16 22 C 0.13 1.99 0.82 -90.62 -0.07 1.92 16 23 C -0.18 -2.57 8.47 37.16 0.31 -2.26 16 24 C -0.14 -1.90 8.42 37.16 0.31 -1.59 16 25 O -0.56 -8.31 11.67 -35.23 -0.41 -8.72 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.99 7.24 -51.93 -0.38 0.61 16 29 H 0.09 2.34 5.98 -51.93 -0.31 2.03 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.33 5.92 5.84 -39.29 -0.23 5.69 16 33 H 0.13 2.08 7.15 -52.48 -0.38 1.70 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.11 1.77 8.04 -52.49 -0.42 1.35 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.93 6.45 -51.93 -0.33 0.59 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.96 6.63 -51.93 -0.34 0.62 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.38 5.01 8.32 45.56 0.38 5.39 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -27.23 346.64 -8.66 -35.89 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.57 Total: 13.75 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.09 Total: -24.79 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.21 Total: -36.91 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.41 Total: -8.72 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.23 -8.66 -35.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.268 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds