Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46954 * 2 1 4 4 H 1.08995 * 109.47118 * 303.04108 * 3 2 1 5 5 C 1.50702 * 109.47035 * 183.04544 * 3 2 1 6 6 H 1.08000 * 119.99774 * 240.00417 * 5 3 2 7 7 C 1.37879 * 119.99923 * 59.99619 * 5 3 2 8 8 N 1.31511 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47082 * 59.99890 * 9 7 5 11 11 H 1.48496 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46988 * 300.00031 * 9 7 5 13 13 N 1.46894 * 109.47443 * 63.04334 * 3 2 1 14 14 C 1.46899 * 111.00043 * 64.50071 * 13 3 2 15 15 C 1.46901 * 111.00412 * 188.45473 * 13 3 2 16 16 C 1.52992 * 109.47163 * 164.09932 * 15 13 3 17 17 C 1.50700 * 109.47121 * 180.02562 * 16 15 13 18 18 C 1.38291 * 119.97197 * 269.73017 * 17 16 15 19 19 C 1.38248 * 120.11019 * 179.72561 * 18 17 16 20 20 C 1.38162 * 120.05608 * 0.54456 * 19 18 17 21 21 C 1.38705 * 119.94516 * 359.72484 * 20 19 18 22 22 O 1.35899 * 120.05957 * 179.97438 * 21 20 19 23 23 C 1.42899 * 116.99601 * 0.02562 * 22 21 20 24 24 C 1.38116 * 119.97541 * 89.99773 * 17 16 15 25 25 H 1.09002 * 109.46986 * 174.80916 * 1 2 3 26 26 H 1.08999 * 109.46930 * 294.80747 * 1 2 3 27 27 H 1.08999 * 109.46825 * 54.81076 * 1 2 3 28 28 H 1.08999 * 109.47395 * 239.99744 * 2 1 3 29 29 H 1.08996 * 109.47243 * 119.99341 * 2 1 3 30 30 H 0.97000 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47341 * 60.00420 * 14 13 3 32 32 H 1.09007 * 109.47489 * 180.02562 * 14 13 3 33 33 H 1.09002 * 109.47305 * 300.00103 * 14 13 3 34 34 H 1.09001 * 109.47296 * 284.10372 * 15 13 3 35 35 H 1.09000 * 109.46382 * 44.09875 * 15 13 3 36 36 H 1.09001 * 109.47665 * 299.99929 * 16 15 13 37 37 H 1.09000 * 109.47519 * 60.00639 * 16 15 13 38 38 H 1.08000 * 119.94393 * 359.97074 * 18 17 16 39 39 H 1.08000 * 119.96501 * 180.25056 * 19 18 17 40 40 H 1.07998 * 120.02241 * 179.70902 * 20 19 18 41 41 H 1.09000 * 109.47048 * 60.00519 * 23 22 21 42 42 H 1.09004 * 109.47291 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47848 * 300.00351 * 23 22 21 44 44 H 1.08000 * 120.03098 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6328 1.9719 -0.8614 5 6 3.5451 1.4433 -0.0755 6 1 4.1252 1.8967 0.7147 7 6 4.1816 0.8649 -1.1532 8 7 3.4752 0.3131 -2.1155 9 14 6.0473 0.8651 -1.2464 10 1 6.6016 0.1436 -0.0727 11 1 6.4807 0.1875 -2.4946 12 1 6.5427 2.2651 -1.2460 13 7 1.6113 2.1135 1.2344 14 6 2.2283 1.4912 2.4134 15 6 1.9078 3.5514 1.1824 16 6 1.1145 4.2754 2.2720 17 6 1.4182 5.7505 2.2182 18 6 2.4611 6.2688 2.9639 19 6 2.7457 7.6207 2.9124 20 6 1.9814 8.4592 2.1240 21 6 0.9313 7.9427 1.3794 22 8 0.1776 8.7655 0.6036 23 6 0.5233 10.1520 0.6019 24 6 0.6511 6.5846 1.4286 25 1 -0.3633 -1.0235 -0.0930 26 1 -0.3633 0.4312 0.9328 27 1 -0.3633 0.5922 -0.8399 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.9230 -0.0942 -2.8735 31 1 3.3132 1.5621 2.3358 32 1 1.8936 2.0069 3.3136 33 1 1.9355 0.4426 2.4658 34 1 2.9742 3.7086 1.3441 35 1 1.6264 3.9451 0.2057 36 1 0.0481 4.1183 2.1104 37 1 1.3959 3.8817 3.2487 38 1 3.0567 5.6158 3.5845 39 1 3.5633 8.0223 3.4926 40 1 2.2013 9.5159 2.0878 41 1 1.5469 10.2708 0.2464 42 1 -0.1553 10.6949 -0.0560 43 1 0.4419 10.5482 1.6141 44 1 -0.1658 6.1800 0.8494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -18.758149 kcal Electronic energy + Delta-G solvation = -21626.851528 eV Core-core repulsion = 18544.252866 eV Total energy + Delta-G solvation = -3082.598661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10640 -37.94490 -37.01073 -33.62349 -32.06541 -31.03181 -30.38285 -28.03734 -27.25685 -26.73115 -24.95840 -23.14847 -22.44801 -21.48654 -20.20901 -18.92492 -17.66599 -16.39014 -16.22502 -15.91348 -15.79434 -15.25783 -14.50192 -14.32603 -13.78384 -13.59154 -13.46798 -13.05827 -12.78137 -12.63038 -12.45478 -12.00408 -11.88580 -11.53847 -11.40800 -11.26119 -11.14442 -10.95191 -10.87663 -10.70683 -10.66758 -10.53358 -10.19576 -9.86516 -9.62105 -9.42822 -9.07664 -8.63731 -8.33563 -8.12678 -7.08786 -5.95650 -4.08765 1.41352 1.53569 3.22687 3.29318 3.34511 3.37000 3.84369 4.41779 4.77106 4.83978 4.98166 5.00653 5.08700 5.27349 5.29340 5.33945 5.43052 5.56221 5.61292 5.80478 5.93860 6.11829 6.20752 6.26289 6.35822 6.39049 6.45999 6.49141 6.52881 6.62807 6.72760 6.78644 6.80463 6.85272 6.94085 7.15560 7.24049 7.39389 7.41410 7.65353 7.79802 8.01382 8.20063 8.35859 8.51413 9.01058 9.58423 11.03579 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.004206 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.363197 B = 6655.969140 C = 7176.093009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.539 5.539 14 C 0.031 3.969 15 C 0.074 3.926 16 C -0.080 4.080 17 C -0.028 4.028 18 C -0.153 4.153 19 C -0.081 4.081 20 C -0.220 4.220 21 C 0.125 3.875 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.147 4.147 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 14.297 8.409 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.262 5.262 14 C -0.118 4.118 15 C -0.055 4.055 16 C -0.118 4.118 17 C -0.029 4.029 18 C -0.172 4.172 19 C -0.099 4.099 20 C -0.239 4.239 21 C 0.080 3.920 22 O -0.232 6.232 23 C -0.066 4.066 24 C -0.166 4.166 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.189 14.089 8.127 17.072 hybrid contribution 2.285 0.360 -0.149 2.318 sum -2.904 14.449 7.978 16.758 Atomic orbital electron populations 1.21694 0.98855 0.98289 1.00547 1.21595 0.92191 0.99184 1.01945 1.19298 0.92687 0.91032 0.86212 0.94500 1.21714 0.92816 1.37540 1.06129 0.92640 1.24897 0.97810 0.95082 0.95574 1.69864 1.34977 1.37808 1.09758 0.86764 0.86376 0.78165 0.77333 1.20354 1.21237 1.20422 1.62443 1.57865 1.01262 1.04674 1.22237 0.97866 0.99217 0.92465 1.21775 0.96968 0.89529 0.97202 1.20734 1.01766 0.88749 1.00531 1.19842 0.93497 0.95949 0.93601 1.21005 0.98919 0.95173 1.02061 1.20874 0.98193 0.93481 0.97380 1.21125 0.99226 1.00312 1.03208 1.19012 0.91019 0.90566 0.91426 1.86073 1.54659 1.18881 1.63633 1.23008 1.01647 0.79878 1.02096 1.20360 1.03116 0.90028 1.03052 0.95686 0.93530 0.94202 0.89081 0.94859 0.92877 0.95043 0.94182 0.92282 0.94818 0.91648 0.90474 0.91143 0.85984 0.86120 0.85972 0.92762 0.88457 0.92889 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.72 37.16 0.36 -2.43 16 2 C -0.11 -2.63 5.08 -26.73 -0.14 -2.77 16 3 C 0.21 5.27 1.73 -68.86 -0.12 5.15 16 4 H 0.04 1.02 7.90 -51.93 -0.41 0.61 16 5 C -0.54 -14.53 7.27 -34.44 -0.25 -14.78 16 6 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.89 -24.99 11.30 55.43 0.63 -24.37 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.54 -11.28 4.14 -236.29 -0.98 -12.26 16 14 C 0.03 0.60 8.77 60.06 0.53 1.13 16 15 C 0.07 1.43 4.49 -3.83 -0.02 1.41 16 16 C -0.08 -1.24 5.39 -27.89 -0.15 -1.39 16 17 C -0.03 -0.42 5.13 -104.65 -0.54 -0.95 16 18 C -0.15 -2.09 9.70 -39.56 -0.38 -2.47 16 19 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 20 C -0.22 -2.69 9.04 -39.44 -0.36 -3.04 16 21 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 22 O -0.32 -4.12 10.50 -19.42 -0.20 -4.32 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.15 -2.17 9.64 -39.43 -0.38 -2.55 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 29 H 0.03 0.78 6.37 -51.93 -0.33 0.45 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.66 6.20 -51.93 -0.32 0.34 16 32 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.06 1.15 6.36 -51.93 -0.33 0.82 16 34 H 0.03 0.70 7.44 -51.93 -0.39 0.31 16 35 H 0.06 1.34 7.83 -51.93 -0.41 0.94 16 36 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.07 1.03 6.63 -51.93 -0.34 0.69 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 41 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 44 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -28.85 346.22 -8.68 -37.53 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.12 Total: 1.57 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.20 Total: -19.60 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.35 Total: -36.62 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.20 Total: -4.32 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.85 -8.68 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.777 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds