Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 H 1.08996 * 109.46884 * 58.37099 * 3 2 1 5 5 C 1.50703 * 109.47030 * 178.37221 * 3 2 1 6 6 H 1.07993 * 120.00121 * 23.84779 * 5 3 2 7 7 C 1.37878 * 119.99602 * 203.84190 * 5 3 2 8 8 N 1.31519 * 119.99746 * 134.30595 * 7 5 3 9 9 Si 1.86800 * 120.00352 * 314.30312 * 7 5 3 10 10 H 1.48503 * 109.46904 * 273.98556 * 9 7 5 11 11 H 1.48494 * 109.46857 * 33.98800 * 9 7 5 12 12 H 1.48498 * 109.47213 * 153.99064 * 9 7 5 13 13 N 1.46900 * 109.46900 * 298.37215 * 3 2 1 14 14 C 1.46896 * 111.00230 * 318.04204 * 13 3 2 15 15 C 1.46894 * 111.00009 * 82.00310 * 13 3 2 16 16 C 1.52999 * 109.47372 * 162.17684 * 15 13 3 17 17 C 1.50696 * 109.47516 * 179.97438 * 16 15 13 18 18 C 1.38162 * 120.03335 * 265.00285 * 17 16 15 19 19 C 1.38237 * 120.05929 * 179.97438 * 18 17 16 20 20 C 1.38291 * 120.11433 * 0.02562 * 19 18 17 21 21 C 1.38126 * 120.05234 * 0.02562 * 20 19 18 22 22 C 1.38712 * 120.02560 * 84.72341 * 17 16 15 23 23 O 1.35905 * 120.05610 * 0.02562 * 22 17 16 24 24 C 1.42901 * 116.99781 * 180.02562 * 23 22 17 25 25 H 1.08997 * 109.47314 * 198.89145 * 1 2 3 26 26 H 1.08999 * 109.46716 * 318.89380 * 1 2 3 27 27 H 1.08999 * 109.46787 * 78.88709 * 1 2 3 28 28 H 1.08997 * 109.47134 * 240.00063 * 2 1 3 29 29 H 1.08997 * 109.47419 * 119.99957 * 2 1 3 30 30 H 0.96992 * 120.00034 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.47017 * 60.00511 * 14 13 3 32 32 H 1.08997 * 109.47547 * 179.97438 * 14 13 3 33 33 H 1.09004 * 109.47437 * 300.00339 * 14 13 3 34 34 H 1.08995 * 109.47148 * 282.17448 * 15 13 3 35 35 H 1.09003 * 109.47529 * 42.17722 * 15 13 3 36 36 H 1.08999 * 109.47495 * 300.00124 * 16 15 13 37 37 H 1.09004 * 109.47182 * 59.99903 * 16 15 13 38 38 H 1.08002 * 119.96955 * 359.97023 * 18 17 16 39 39 H 1.08006 * 119.95024 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.97535 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.02636 * 179.97438 * 21 20 19 42 42 H 1.09008 * 109.46769 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47306 * 299.99433 * 24 23 22 44 44 H 1.08998 * 109.47276 * 60.00445 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6531 1.9646 0.8750 5 6 3.5465 1.4426 0.0404 6 1 4.0963 0.5837 -0.3150 7 6 4.2229 2.5393 0.5310 8 7 5.2184 2.3747 1.3745 9 14 3.7253 4.2590 -0.0024 10 1 4.4181 4.6040 -1.2699 11 1 2.2561 4.3064 -0.2125 12 1 4.1065 5.2338 1.0510 13 7 1.5828 2.1235 -1.2186 14 6 1.7067 1.2460 -2.3902 15 6 0.2039 2.6064 -1.0660 16 6 -0.0862 3.6663 -2.1306 17 6 -1.5009 4.1612 -1.9744 18 6 -2.5161 3.6023 -2.7267 19 6 -3.8142 4.0556 -2.5834 20 6 -4.1001 5.0696 -1.6876 21 6 -3.0887 5.6324 -0.9339 22 6 -1.7860 5.1744 -1.0709 23 8 -0.7901 5.7223 -0.3260 24 6 -1.1571 6.7610 0.5843 25 1 -0.3634 -0.9723 0.3327 26 1 -0.3633 0.7743 0.6757 27 1 -0.3633 0.1981 -1.0084 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.6940 3.1463 1.7199 31 1 1.1003 0.3526 -2.2407 32 1 1.3610 1.7747 -3.2784 33 1 2.7502 0.9592 -2.5207 34 1 -0.4882 1.7729 -1.1851 35 1 0.0795 3.0432 -0.0751 36 1 0.6060 4.4999 -2.0115 37 1 0.0382 3.2295 -3.1215 38 1 -2.2953 2.8106 -3.4273 39 1 -4.6063 3.6177 -3.1727 40 1 -5.1151 5.4217 -1.5772 41 1 -3.3124 6.4245 -0.2347 42 1 -0.2705 7.1098 1.1141 43 1 -1.5987 7.5898 0.0310 44 1 -1.8816 6.3760 1.3019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = -15.285022 kcal Electronic energy + Delta-G solvation = -22568.961548 eV Core-core repulsion = 19486.513493 eV Total energy + Delta-G solvation = -3082.448055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18849 -39.55450 -38.27764 -35.10573 -34.22893 -32.45790 -31.01720 -30.06926 -28.96427 -28.10105 -26.58665 -24.94648 -23.06716 -22.95814 -21.52073 -20.73579 -18.88935 -18.68859 -17.32147 -17.05959 -16.68105 -16.46836 -16.27496 -15.83600 -15.42397 -15.22464 -14.81707 -14.58795 -14.27839 -13.86977 -13.73413 -13.51943 -13.30729 -13.10739 -12.89480 -12.78538 -12.68589 -12.50944 -12.31342 -12.27080 -11.99524 -11.77771 -11.69715 -11.60083 -11.48315 -11.38777 -11.17748 -10.17560 -9.72716 -9.03792 -8.54727 -8.47336 -6.08363 0.41964 0.54698 1.45903 1.50686 1.79272 2.46093 2.55960 2.79910 2.87661 3.57873 3.91386 3.95444 4.14055 4.24662 4.27399 4.33732 4.34661 4.37081 4.47039 4.53375 4.57403 4.59816 4.67566 4.70180 4.72491 4.81486 4.85233 4.99645 5.02714 5.11713 5.16724 5.20814 5.21732 5.38980 5.45010 5.48214 5.56430 5.59634 5.67680 5.78289 5.95549 6.22865 6.53922 6.65785 6.81183 6.94540 7.45084 8.67901 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.006248 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.280239 B = 4480.585810 C = 5441.718495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.204 3.796 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.031 0.969 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.914 3.086 10 H -0.291 1.291 11 H -0.223 1.223 12 H -0.316 1.316 13 N -0.550 5.550 14 C 0.034 3.966 15 C 0.061 3.939 16 C -0.061 4.061 17 C -0.129 4.129 18 C -0.085 4.085 19 C -0.157 4.157 20 C -0.089 4.089 21 C -0.214 4.214 22 C 0.106 3.894 23 O -0.341 6.341 24 C 0.020 3.980 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.411 5.930 -6.645 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.098 3.902 4 H 0.035 0.965 5 C -0.588 4.588 6 H 0.050 0.950 7 C -0.141 4.141 8 N -0.523 5.523 9 Si 0.740 3.260 10 H -0.218 1.218 11 H -0.145 1.145 12 H -0.245 1.245 13 N -0.274 5.274 14 C -0.114 4.114 15 C -0.067 4.067 16 C -0.099 4.099 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.175 4.175 20 C -0.106 4.106 21 C -0.232 4.232 22 C 0.061 3.939 23 O -0.255 6.255 24 C -0.075 4.075 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.763 6.345 -6.581 22.686 hybrid contribution 0.272 0.400 0.339 0.591 sum -20.491 6.745 -6.241 22.457 Atomic orbital electron populations 1.22043 0.95128 1.01385 1.01561 1.21982 0.95704 0.98918 1.00891 1.19494 0.92787 0.89914 0.87991 0.96542 1.20637 0.91401 1.01543 1.45207 0.95038 1.25526 0.94263 1.02954 0.91360 1.70521 1.25434 1.33005 1.23302 0.86345 0.82744 0.80130 0.76757 1.21799 1.14525 1.24466 1.62794 1.19804 1.39757 1.05057 1.22266 1.00722 0.95315 0.93132 1.22253 0.90290 0.96622 0.97502 1.20340 0.91842 0.98152 0.99541 1.19465 0.96827 0.97849 0.98908 1.21138 0.92140 0.98913 0.98085 1.21372 0.96645 0.98798 1.00671 1.21289 0.99502 0.95408 0.94450 1.21475 0.91673 1.04784 1.05283 1.19240 0.87987 0.94130 0.92545 1.86167 1.34691 1.52185 1.52463 1.23264 1.03265 0.88934 0.92007 0.91954 0.93737 0.91613 0.92268 0.93922 0.92507 0.94644 0.91520 0.93594 0.92887 0.94368 0.93342 0.90353 0.84058 0.83291 0.83098 0.83901 0.88097 0.91057 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.13 71.98 0.59 -4.08 16 2 C -0.14 -5.55 4.85 30.59 0.15 -5.40 16 3 C 0.20 9.84 1.47 44.17 0.06 9.91 16 4 H 0.02 0.85 7.48 -2.39 -0.02 0.84 16 5 C -0.55 -31.97 8.26 25.60 0.21 -31.76 16 6 H 0.03 1.99 8.05 -2.91 -0.02 1.96 16 7 C 0.06 3.87 5.35 84.65 0.45 4.32 16 8 N -0.89 -55.42 13.96 21.45 0.30 -55.12 16 9 Si 0.91 47.62 27.74 68.60 1.90 49.53 16 10 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 11 H -0.22 -11.27 6.16 99.48 0.61 -10.66 16 12 H -0.32 -16.44 7.11 99.48 0.71 -15.73 16 13 N -0.55 -23.42 2.70 -901.49 -2.43 -25.85 16 14 C 0.03 1.24 8.24 127.69 1.05 2.29 16 15 C 0.06 2.25 3.39 86.30 0.29 2.54 16 16 C -0.06 -2.03 5.14 29.85 0.15 -1.88 16 17 C -0.13 -3.75 5.15 -19.77 -0.10 -3.85 16 18 C -0.08 -1.92 9.68 22.25 0.22 -1.71 16 19 C -0.16 -2.89 10.04 22.28 0.22 -2.66 16 20 C -0.09 -1.60 10.04 22.26 0.22 -1.38 16 21 C -0.21 -4.70 9.04 22.37 0.20 -4.50 16 22 C 0.11 3.06 6.66 22.51 0.15 3.21 16 23 O -0.34 -10.90 9.64 -92.48 -0.89 -11.79 16 24 C 0.02 0.43 9.81 113.37 1.11 1.54 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 27 H 0.07 1.95 4.82 -2.39 -0.01 1.94 16 28 H 0.06 2.37 6.26 -2.39 -0.01 2.36 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.04 1.18 4.85 -2.38 -0.01 1.17 16 32 H 0.07 2.12 6.66 -2.39 -0.02 2.10 16 33 H 0.05 1.89 7.73 -2.39 -0.02 1.87 16 34 H 0.05 1.75 4.73 -2.39 -0.01 1.74 16 35 H 0.04 1.58 7.62 -2.39 -0.02 1.56 16 36 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 37 H 0.08 2.33 6.69 -2.39 -0.02 2.31 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.14 2.46 6.30 -2.91 -0.02 2.44 16 42 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16 44 H 0.07 1.22 7.68 -2.39 -0.02 1.20 16 Total: -1.00 -69.84 338.19 4.74 -65.10 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.88 Total: 11.54 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.99 Total: -33.40 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.14 Total: -80.97 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.89 Total: -11.79 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.90 Total: 49.53 kcal Total: -69.84 4.74 -65.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.812 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds