Wall clock time and date at job start Mon Mar 30 2020 01:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 H 1.08993 * 109.47626 * 310.33461 * 3 2 1 5 5 C 1.50705 * 109.47088 * 190.33060 * 3 2 1 6 6 H 1.07994 * 120.00309 * 245.33582 * 5 3 2 7 7 C 1.37874 * 119.99715 * 65.33497 * 5 3 2 8 8 N 1.31513 * 120.00201 * 202.82926 * 7 5 3 9 9 Si 1.86805 * 120.00182 * 22.82751 * 7 5 3 10 10 H 1.48497 * 109.47068 * 85.57361 * 9 7 5 11 11 H 1.48497 * 109.47370 * 205.57382 * 9 7 5 12 12 H 1.48502 * 109.46980 * 325.57554 * 9 7 5 13 13 N 1.46907 * 109.47086 * 70.33714 * 3 2 1 14 14 C 1.46899 * 110.99950 * 42.69139 * 13 3 2 15 15 C 1.46895 * 110.99748 * 278.73604 * 13 3 2 16 16 C 1.52994 * 109.47320 * 204.34018 * 15 13 3 17 17 C 1.50700 * 109.47548 * 179.97438 * 16 15 13 18 18 C 1.38163 * 120.02845 * 265.00164 * 17 16 15 19 19 C 1.38246 * 120.05301 * 180.29271 * 18 17 16 20 20 C 1.38288 * 120.11213 * 359.45345 * 19 18 17 21 21 C 1.38125 * 120.05480 * 0.54222 * 20 19 18 22 22 C 1.38717 * 120.02503 * 85.01762 * 17 16 15 23 23 O 1.35897 * 120.05739 * 359.96568 * 22 17 16 24 24 C 1.42901 * 117.00121 * 179.97438 * 23 22 17 25 25 H 1.08997 * 109.47528 * 42.54995 * 1 2 3 26 26 H 1.08998 * 109.47640 * 162.55641 * 1 2 3 27 27 H 1.08999 * 109.46895 * 282.55486 * 1 2 3 28 28 H 1.09002 * 109.47176 * 240.00019 * 2 1 3 29 29 H 1.09007 * 109.47103 * 120.00604 * 2 1 3 30 30 H 0.97003 * 120.00107 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.46725 * 296.04330 * 14 13 3 32 32 H 1.09001 * 109.47328 * 56.04662 * 14 13 3 33 33 H 1.09001 * 109.46800 * 176.05083 * 14 13 3 34 34 H 1.08998 * 109.47409 * 84.33961 * 15 13 3 35 35 H 1.09007 * 109.46945 * 324.33969 * 15 13 3 36 36 H 1.08998 * 109.47283 * 60.00056 * 16 15 13 37 37 H 1.09007 * 109.47071 * 299.99874 * 16 15 13 38 38 H 1.07997 * 119.97265 * 0.02562 * 18 17 16 39 39 H 1.08006 * 119.94350 * 179.70027 * 19 18 17 40 40 H 1.07999 * 119.97377 * 180.30043 * 20 19 18 41 41 H 1.07999 * 120.02848 * 179.74950 * 21 20 19 42 42 H 1.09002 * 109.46749 * 299.99840 * 24 23 22 43 43 H 1.09004 * 109.47256 * 59.99251 * 24 23 22 44 44 H 1.09000 * 109.47409 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5341 2.0068 -0.7833 5 6 3.5253 1.4501 -0.2548 6 1 4.2032 1.7916 0.5134 7 6 4.0187 1.0211 -1.4687 8 7 5.2609 0.5993 -1.5616 9 14 2.9227 1.0388 -2.9813 10 1 2.9707 2.3825 -3.6116 11 1 3.4002 0.0201 -3.9506 12 1 1.5260 0.7279 -2.5843 13 7 1.7638 2.0595 1.3043 14 6 2.0670 1.1304 2.4010 15 6 0.3739 2.5287 1.3809 16 6 0.2706 3.6504 2.4162 17 6 -1.1551 4.1323 2.4943 18 6 -1.5565 5.2273 1.7536 19 6 -2.8628 5.6735 1.8296 20 6 -3.7737 5.0185 2.6380 21 6 -3.3774 3.9232 3.3804 22 6 -2.0656 3.4768 3.3103 23 8 -1.6733 2.3993 4.0395 24 6 -2.6641 1.7744 4.8581 25 1 -0.3634 0.7570 -0.6949 26 1 -0.3634 -0.9804 -0.3080 27 1 -0.3633 0.2234 1.0031 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 5.6081 0.2978 -2.4157 31 1 1.4031 0.2680 2.3405 32 1 3.1022 0.7984 2.3203 33 1 1.9207 1.6353 3.3558 34 1 -0.2729 1.7022 1.6750 35 1 0.0630 2.9043 0.4060 36 1 0.9174 4.4770 2.1221 37 1 0.5816 3.2748 3.3911 38 1 -0.8481 5.7378 1.1181 39 1 -3.1734 6.5326 1.2535 40 1 -4.7948 5.3660 2.6919 41 1 -4.0882 3.4144 4.0147 42 1 -3.0446 2.4951 5.5819 43 1 -3.4833 1.4216 4.2315 44 1 -2.2202 0.9296 5.3848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:28 Heat of formation + Delta-G solvation = -4.481653 kcal Electronic energy + Delta-G solvation = -22265.060214 eV Core-core repulsion = 19183.080628 eV Total energy + Delta-G solvation = -3081.979586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27351 -37.94312 -37.35447 -33.75324 -32.23187 -31.08043 -30.14911 -28.64033 -27.50312 -27.12399 -25.17413 -22.91041 -22.14024 -21.83308 -20.45118 -19.06512 -17.99560 -16.64568 -16.30589 -15.88388 -15.75953 -15.14184 -14.55640 -14.48498 -14.27272 -13.77282 -13.70952 -12.99072 -12.81265 -12.63868 -12.52398 -12.10486 -12.01310 -11.85668 -11.59838 -11.42892 -11.34341 -11.18856 -10.98928 -10.81702 -10.72146 -10.52882 -10.35968 -10.00907 -9.65798 -9.54662 -9.26871 -8.82412 -8.22672 -8.10243 -7.12754 -6.06147 -3.92102 1.30998 1.42772 3.24696 3.33668 3.42215 3.45860 3.74187 4.49340 4.67579 4.77709 4.88992 4.98841 5.00333 5.15186 5.21219 5.32372 5.33445 5.48749 5.56979 5.63923 5.82764 5.85517 5.96406 6.01168 6.10386 6.17345 6.18360 6.28932 6.34512 6.38197 6.48235 6.54552 6.63945 6.67579 6.70774 6.82628 6.85318 6.95078 7.06283 7.34266 7.38451 7.76782 8.08622 8.24583 8.75918 9.12641 9.64548 11.07028 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.004639 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.359402 B = 6034.966670 C = 6447.215601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C 0.193 3.807 4 H 0.030 0.970 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.887 5.887 9 Si 0.854 3.146 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.260 1.260 13 N -0.523 5.523 14 C 0.034 3.966 15 C 0.058 3.942 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.157 4.157 20 C -0.093 4.093 21 C -0.210 4.210 22 C 0.127 3.873 23 O -0.308 6.308 24 C 0.028 3.972 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.262 0.738 31 H 0.019 0.981 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.486 5.265 10.412 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C 0.085 3.915 4 H 0.047 0.953 5 C -0.544 4.544 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.681 3.319 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.246 5.246 14 C -0.114 4.114 15 C -0.071 4.071 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.098 4.098 19 C -0.175 4.175 20 C -0.111 4.111 21 C -0.229 4.229 22 C 0.082 3.918 23 O -0.221 6.221 24 C -0.067 4.067 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.824 5.494 10.350 21.331 hybrid contribution -1.444 -0.763 -0.990 1.909 sum -19.267 4.731 9.361 21.937 Atomic orbital electron populations 1.22129 0.98622 1.00062 1.00646 1.22590 0.92757 1.02164 1.01942 1.19752 0.97134 0.88325 0.86259 0.95271 1.20853 0.89671 1.43092 1.00797 0.90323 1.24820 0.94729 0.94123 0.98710 1.70053 1.16361 1.40696 1.25269 0.87268 0.82555 0.77999 0.84074 1.20404 1.21638 1.18465 1.62103 1.19194 1.39175 1.04129 1.22322 1.01613 0.94087 0.93427 1.22254 0.90925 0.96055 0.97835 1.20474 0.90217 0.99301 1.00648 1.19466 0.96424 0.96529 0.97774 1.21003 0.96143 0.95189 0.97465 1.21037 0.93760 1.01353 1.01337 1.20855 0.99252 0.94950 0.96026 1.21178 0.95250 1.01148 1.05332 1.18905 0.92521 0.87854 0.92555 1.86144 1.38144 1.41508 1.56353 1.23028 0.92378 0.97592 0.93742 0.93592 0.94392 0.93103 0.92496 0.91918 0.92808 0.96258 0.90878 0.93505 0.94427 0.92158 0.90494 0.90924 0.85159 0.86119 0.86243 0.85856 0.92944 0.92901 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.63 37.16 0.32 -2.63 16 2 C -0.16 -3.43 4.31 -26.73 -0.12 -3.54 16 3 C 0.19 4.60 1.45 -68.86 -0.10 4.50 16 4 H 0.03 0.73 5.77 -51.93 -0.30 0.43 16 5 C -0.51 -14.24 8.55 -34.44 -0.29 -14.53 16 6 H 0.08 2.43 7.93 -52.49 -0.42 2.01 16 7 C 0.08 2.26 5.16 -17.82 -0.09 2.17 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.85 21.36 26.02 -169.99 -4.42 16.93 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.21 6.10 56.52 0.34 -5.87 16 13 N -0.52 -11.03 4.52 -236.29 -1.07 -12.10 16 14 C 0.03 0.66 8.19 60.06 0.49 1.15 16 15 C 0.06 1.04 3.82 -3.83 -0.01 1.03 16 16 C -0.07 -1.08 5.23 -27.89 -0.15 -1.23 16 17 C -0.10 -1.43 5.15 -104.47 -0.54 -1.97 16 18 C -0.08 -1.01 9.68 -39.61 -0.38 -1.39 16 19 C -0.16 -1.72 10.04 -39.56 -0.40 -2.12 16 20 C -0.09 -0.97 10.04 -39.60 -0.40 -1.37 16 21 C -0.21 -2.37 9.04 -39.43 -0.36 -2.73 16 22 C 0.13 1.70 6.66 -39.21 -0.26 1.44 16 23 O -0.31 -4.07 9.63 -19.42 -0.19 -4.26 16 24 C 0.03 0.24 9.81 101.05 0.99 1.24 16 25 H 0.04 0.86 7.86 -51.93 -0.41 0.46 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.90 5.16 -51.93 -0.27 0.63 16 28 H 0.06 1.35 5.81 -51.93 -0.30 1.05 16 29 H 0.06 1.37 5.76 -51.93 -0.30 1.07 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.02 0.36 5.61 -51.93 -0.29 0.07 16 32 H 0.07 1.56 7.52 -51.93 -0.39 1.17 16 33 H 0.05 0.81 7.14 -51.93 -0.37 0.44 16 34 H 0.04 0.68 5.29 -51.93 -0.27 0.40 16 35 H 0.06 1.12 7.49 -51.93 -0.39 0.73 16 36 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 37 H 0.07 1.17 6.73 -51.93 -0.35 0.82 16 38 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 42 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 43 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -30.98 336.73 -8.03 -39.01 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.91 Total: 1.50 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.29 Total: -19.99 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.30 Total: -38.27 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.19 Total: -4.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.42 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.98 -8.03 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.532 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds