Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47182 * 2 1 4 4 H 1.09006 * 109.46738 * 184.33078 * 3 2 1 5 5 C 1.50702 * 109.47497 * 304.32530 * 3 2 1 6 6 H 1.07996 * 119.99746 * 116.58759 * 5 3 2 7 7 C 1.37872 * 120.00103 * 296.59670 * 5 3 2 8 8 N 1.31515 * 120.00343 * 351.04351 * 7 5 3 9 9 Si 1.86808 * 120.00099 * 171.05266 * 7 5 3 10 10 H 1.48497 * 109.47067 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46694 * 299.99398 * 9 7 5 12 12 H 1.48498 * 109.47028 * 59.99415 * 9 7 5 13 13 N 1.46892 * 109.47501 * 64.33093 * 3 2 1 14 14 C 1.46901 * 111.00505 * 197.89915 * 13 3 2 15 15 C 1.46903 * 110.99811 * 73.94520 * 13 3 2 16 16 H 1.08993 * 109.47167 * 44.13806 * 15 13 3 17 17 C 1.53006 * 109.46701 * 164.13753 * 15 13 3 18 18 C 1.50702 * 109.47311 * 284.13235 * 15 13 3 19 19 C 1.38264 * 119.94686 * 312.19690 * 18 15 13 20 20 C 1.38140 * 120.05672 * 179.72068 * 19 18 15 21 21 C 1.38737 * 119.94248 * 0.55174 * 20 19 18 22 22 O 1.35895 * 120.05419 * 179.74809 * 21 20 19 23 23 C 1.42898 * 117.00332 * 359.97340 * 22 21 20 24 24 C 1.38729 * 119.88854 * 359.72004 * 21 20 19 25 25 C 1.38142 * 119.94532 * 0.02562 * 24 21 20 26 26 H 1.09008 * 109.47194 * 66.95346 * 1 2 3 27 27 H 1.09000 * 109.47469 * 186.95751 * 1 2 3 28 28 H 1.09002 * 109.46657 * 306.95858 * 1 2 3 29 29 H 1.09007 * 109.46635 * 239.99991 * 2 1 3 30 30 H 1.08997 * 109.46434 * 120.00323 * 2 1 3 31 31 H 0.97005 * 119.99399 * 358.77186 * 8 7 5 32 32 H 1.09005 * 109.46766 * 62.08842 * 14 13 3 33 33 H 1.08995 * 109.47491 * 182.08764 * 14 13 3 34 34 H 1.08998 * 109.46844 * 302.09382 * 14 13 3 35 35 H 1.08994 * 109.47117 * 299.99476 * 17 15 13 36 36 H 1.08993 * 109.47267 * 60.00114 * 17 15 13 37 37 H 1.09005 * 109.46543 * 180.02562 * 17 15 13 38 38 H 1.08005 * 119.96932 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.03221 * 180.27362 * 20 19 18 40 40 H 1.08999 * 109.47485 * 300.00375 * 23 22 21 41 41 H 1.09000 * 109.47230 * 60.00416 * 23 22 21 42 42 H 1.08999 * 109.47380 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.03054 * 179.97438 * 24 21 20 44 44 H 1.07998 * 119.97681 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4433 -0.0776 5 6 1.4522 2.1832 -1.1734 6 1 0.7961 3.0247 -1.0069 7 6 1.7518 1.7865 -2.4593 8 7 2.6824 0.8809 -2.6682 9 14 0.8361 2.5354 -3.9051 10 1 1.3415 1.9451 -5.1705 11 1 -0.6156 2.2527 -3.7716 12 1 1.0549 4.0041 -3.9225 13 7 1.6377 2.1041 1.2482 14 6 1.7231 3.5651 1.1209 15 6 2.4426 1.6264 2.3804 16 1 3.4911 1.5791 2.0864 17 6 2.2864 2.5891 3.5593 18 6 1.9725 0.2536 2.7873 19 6 0.6224 0.0089 2.9580 20 6 0.1885 -1.2501 3.3254 21 6 1.1095 -2.2664 3.5341 22 8 0.6855 -3.5044 3.9005 23 6 -0.7233 -3.6889 4.0533 24 6 2.4639 -2.0169 3.3676 25 6 2.8924 -0.7575 2.9951 26 1 -0.3634 0.4023 -0.9457 27 1 -0.3634 -1.0201 0.1245 28 1 -0.3633 0.6179 0.8212 29 1 1.8933 -0.5139 -0.8901 30 1 1.8932 -0.5139 0.8900 31 1 3.1703 0.5052 -1.9188 32 1 1.0360 3.9030 0.3451 33 1 1.4555 4.0288 2.0703 34 1 2.7412 3.8475 0.8528 35 1 2.6265 3.5820 3.2651 36 1 1.2380 2.6365 3.8533 37 1 2.8841 2.2349 4.3993 38 1 -0.0938 0.8018 2.8001 39 1 -0.8665 -1.4419 3.4543 40 1 -1.0972 -3.0121 4.8215 41 1 -1.2222 -3.4765 3.1078 42 1 -0.9252 -4.7191 4.3467 43 1 3.1829 -2.8063 3.5299 44 1 3.9467 -0.5628 2.8649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = 0.687776 kcal Electronic energy + Delta-G solvation = -23054.142744 eV Core-core repulsion = 19972.387321 eV Total energy + Delta-G solvation = -3081.755423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09772 -38.50563 -36.42706 -33.94855 -31.13243 -31.02255 -30.59177 -28.48568 -27.10788 -25.91923 -25.20483 -23.02825 -22.63957 -21.71301 -20.00482 -19.04502 -17.92822 -16.62095 -16.07194 -15.63692 -15.62400 -14.63274 -14.34487 -14.22867 -13.70836 -13.56815 -13.46391 -13.18183 -12.70278 -12.52517 -12.24163 -12.16584 -11.95251 -11.82879 -11.37871 -11.24130 -11.14071 -10.80236 -10.65815 -10.58646 -10.43216 -10.26993 -10.07577 -9.96543 -9.74756 -9.50755 -8.61056 -8.42856 -8.26621 -7.57919 -7.24716 -6.28227 -3.98085 1.68511 1.79269 3.41654 3.44394 3.47236 3.64922 4.08991 4.54186 4.85030 5.00657 5.14610 5.15465 5.21005 5.27197 5.43523 5.44091 5.61663 5.67241 5.71988 5.77938 5.90000 6.01590 6.13130 6.22163 6.34279 6.38710 6.43129 6.48260 6.55562 6.61295 6.67486 6.75666 6.81637 7.02723 7.07402 7.12793 7.23750 7.36007 7.51108 7.60907 7.62555 7.88856 8.09134 8.47674 8.63698 8.93036 9.70854 11.07293 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.005887 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.219739 B = 4755.261680 C = 5482.056195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C 0.208 3.792 4 H -0.013 1.013 5 C -0.588 4.588 6 H 0.059 0.941 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.062 2.938 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.523 5.523 14 C 0.035 3.965 15 C 0.116 3.884 16 H 0.039 0.961 17 C -0.144 4.144 18 C -0.080 4.080 19 C -0.042 4.042 20 C -0.209 4.209 21 C 0.112 3.888 22 O -0.323 6.323 23 C 0.030 3.970 24 C -0.154 4.154 25 C -0.085 4.085 26 H 0.051 0.949 27 H 0.012 0.988 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.270 0.730 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.012 0.988 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -3.168 13.778 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C 0.101 3.899 4 H 0.004 0.996 5 C -0.626 4.626 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.891 3.109 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.247 5.247 14 C -0.113 4.113 15 C 0.007 3.993 16 H 0.057 0.943 17 C -0.201 4.201 18 C -0.081 4.081 19 C -0.060 4.060 20 C -0.228 4.228 21 C 0.068 3.932 22 O -0.237 6.237 23 C -0.066 4.066 24 C -0.173 4.173 25 C -0.104 4.104 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.426 -3.492 12.237 13.473 hybrid contribution 0.731 0.222 1.291 1.500 sum -3.696 -3.269 13.528 14.400 Atomic orbital electron populations 1.21447 0.96773 0.97152 1.01827 1.21730 0.96249 0.98107 0.99456 1.19383 0.92729 0.91619 0.86144 0.99585 1.21974 1.32102 1.17133 0.91413 0.92327 1.25639 0.96420 0.96134 0.99993 1.70788 1.20844 1.27688 1.35429 0.83644 0.75763 0.75491 0.76016 1.20990 1.21464 1.21667 1.62057 1.53170 1.05040 1.04459 1.22335 0.99896 0.88761 1.00265 1.20508 0.95154 0.91191 0.92457 0.94349 1.22000 1.02084 0.98935 0.97119 1.19619 0.93455 0.95264 0.99787 1.20739 0.95531 0.95711 0.94067 1.21164 0.98787 0.94253 1.08548 1.18942 0.93513 0.83768 0.97009 1.86013 1.24802 1.28860 1.84070 1.22973 0.79913 1.02477 1.01190 1.20225 0.92705 0.97670 1.06710 1.20795 0.99367 0.91859 0.98362 0.92949 0.96917 0.92801 0.92868 0.93983 0.91880 0.90340 0.93400 0.96910 0.92135 0.92037 0.92997 0.85250 0.86123 0.92949 0.92702 0.88747 0.85909 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.48 37.16 0.32 -2.23 16 2 C -0.12 -2.76 4.85 -26.73 -0.13 -2.89 16 3 C 0.21 5.06 1.49 -68.87 -0.10 4.96 16 4 H -0.01 -0.36 7.18 -51.93 -0.37 -0.74 16 5 C -0.59 -15.65 6.49 -34.44 -0.22 -15.88 16 6 H 0.06 1.56 5.64 -52.49 -0.30 1.26 16 7 C 0.02 0.63 5.22 -17.82 -0.09 0.54 16 8 N -0.91 -27.02 12.97 55.43 0.72 -26.31 16 9 Si 1.06 24.97 29.91 -169.99 -5.08 19.88 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.64 3.43 -229.69 -0.79 -11.42 16 14 C 0.04 0.68 8.14 60.07 0.49 1.17 16 15 C 0.12 2.04 2.39 -68.86 -0.16 1.87 16 16 H 0.04 0.73 7.54 -51.93 -0.39 0.34 16 17 C -0.14 -2.07 8.10 37.16 0.30 -1.76 16 18 C -0.08 -1.36 2.48 -104.60 -0.26 -1.62 16 19 C -0.04 -0.69 6.35 -39.61 -0.25 -0.94 16 20 C -0.21 -3.15 9.04 -39.43 -0.36 -3.51 16 21 C 0.11 1.74 6.69 -39.22 -0.26 1.48 16 22 O -0.32 -4.61 10.50 -19.41 -0.20 -4.81 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.15 -2.39 9.99 -39.44 -0.39 -2.79 16 25 C -0.09 -1.37 8.71 -39.60 -0.35 -1.71 16 26 H 0.05 1.27 7.37 -51.92 -0.38 0.89 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 1.13 5.48 -51.93 -0.28 0.84 16 29 H 0.05 1.41 6.29 -51.93 -0.33 1.08 16 30 H 0.04 0.93 4.02 -51.93 -0.21 0.72 16 31 H 0.27 8.06 5.99 -40.82 -0.24 7.81 16 32 H 0.08 1.63 5.79 -51.93 -0.30 1.33 16 33 H 0.05 0.77 5.84 -51.93 -0.30 0.47 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.84 6.28 -51.93 -0.33 0.51 16 36 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.13 2.15 7.13 -52.48 -0.37 1.77 16 39 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 40 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 41 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.12 1.77 7.98 -52.49 -0.42 1.36 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -29.82 329.17 -7.57 -37.38 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.68 Total: 2.34 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.48 Total: -22.03 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.07 Total: -37.73 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.82 -7.57 -37.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.071 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds