Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.46904 * 2 1 4 4 O 1.42904 * 109.46874 * 180.02562 * 3 2 1 5 5 C 1.35900 * 116.99940 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.05806 * 359.97438 * 5 4 3 7 7 C 1.38119 * 119.94764 * 180.02562 * 6 5 4 8 8 C 1.38287 * 120.05611 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.94736 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47224 * 89.99848 * 9 8 7 11 11 C 1.46903 * 111.00000 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47052 * 34.99701 * 11 10 9 13 13 C 1.53000 * 109.47096 * 275.00251 * 11 10 9 14 14 C 1.50694 * 109.47066 * 155.00016 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.38244 * 120.10955 * 0.25256 * 8 7 6 23 23 C 1.38167 * 120.05727 * 359.45043 * 22 8 7 24 24 C 1.50695 * 120.03397 * 180.25091 * 23 22 8 25 25 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47283 * 299.99739 * 1 2 3 27 27 H 1.09000 * 109.47448 * 60.00293 * 1 2 3 28 28 H 1.09002 * 109.46985 * 239.99875 * 2 1 3 29 29 H 1.09002 * 109.47205 * 120.00194 * 2 1 3 30 30 H 1.08993 * 109.47642 * 60.00088 * 3 2 1 31 31 H 1.09002 * 109.47348 * 300.00107 * 3 2 1 32 32 H 1.07998 * 120.02667 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97792 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46917 * 329.99727 * 9 8 7 35 35 H 1.09001 * 109.47224 * 209.99832 * 9 8 7 36 36 H 1.00896 * 110.99858 * 303.95284 * 10 9 8 37 37 H 1.08998 * 109.47089 * 59.99840 * 13 11 10 38 38 H 1.08995 * 109.47131 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47106 * 299.99893 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.97399 * 179.70876 * 22 8 7 42 42 H 1.09007 * 109.47329 * 270.32508 * 24 23 22 43 43 H 1.09007 * 109.46647 * 30.31723 * 24 23 22 44 44 H 1.09001 * 109.47657 * 150.31724 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0859 2.6533 -0.0001 6 6 3.3314 3.8178 0.0003 7 6 3.9608 5.0472 0.0003 8 6 5.3419 5.1183 -0.0008 9 6 6.0260 6.4610 -0.0015 10 7 6.2494 6.8974 1.3833 11 6 6.9156 8.2061 1.4218 12 1 6.5645 8.8172 0.5902 13 6 8.4289 8.0116 1.3084 14 6 6.5939 8.8955 2.7227 15 1 5.9577 8.4102 3.4481 16 6 7.1108 10.1463 2.9864 17 7 7.8850 10.7375 2.1028 18 14 6.7113 11.0010 4.5986 19 1 5.4813 11.8168 4.4349 20 1 6.4931 9.9832 5.6577 21 1 7.8422 11.8826 4.9848 22 6 6.0959 3.9596 -0.0071 23 6 5.4711 2.7273 -0.0008 24 6 6.2936 1.4646 -0.0020 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.2528 3.7628 -0.0001 33 1 3.3740 5.9539 0.0011 34 1 5.3976 7.1887 -0.5149 35 1 6.9836 6.3806 -0.5160 36 1 5.3831 6.9177 1.9002 37 1 8.6616 7.5130 0.3675 38 1 8.9233 8.9826 1.3374 39 1 8.7801 7.4005 2.1399 40 1 8.2483 11.6175 2.2881 41 1 7.1744 4.0177 -0.0127 42 1 6.4916 1.1608 -1.0300 43 1 7.2380 1.6457 0.5115 44 1 5.7466 0.6740 0.5117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474250649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = -35.853824 kcal Electronic energy + Delta-G solvation = -20916.291979 eV Core-core repulsion = 17832.951993 eV Total energy + Delta-G solvation = -3083.339986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21515 -37.92552 -35.75572 -34.20976 -32.96650 -32.26105 -30.45451 -28.05946 -27.09920 -26.40253 -25.28015 -23.91248 -22.71331 -21.08963 -20.32224 -19.70221 -17.97974 -16.61184 -16.45617 -16.17336 -15.02833 -14.71256 -14.48042 -14.37409 -14.14897 -13.63535 -13.61815 -13.22686 -13.02538 -12.75885 -12.63190 -12.41211 -12.17824 -12.05664 -11.65247 -11.47905 -11.38732 -11.37666 -11.02274 -10.83695 -10.72177 -10.63336 -10.60167 -10.23325 -10.10453 -9.89525 -8.82593 -8.61780 -8.47001 -7.86217 -7.22744 -6.01800 -4.08085 1.51598 1.61564 3.12134 3.29852 3.36541 3.40900 3.90416 4.41586 4.56599 4.57305 4.88212 4.89642 4.95304 5.09693 5.10960 5.14595 5.29368 5.30851 5.47008 5.51128 5.59302 5.63146 5.71719 5.72593 5.74789 5.77065 5.85659 5.96766 6.11723 6.26882 6.39447 6.49811 6.58233 6.87644 6.96272 6.99747 7.15756 7.24937 7.48056 7.52332 7.79352 7.91280 8.28980 8.40994 8.68660 9.02759 9.57763 11.04499 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.003073 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.770929 B = 9109.506605 C = 9743.703515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.316 6.316 5 C 0.116 3.884 6 C -0.205 4.205 7 C -0.083 4.083 8 C -0.096 4.096 9 C 0.099 3.901 10 N -0.682 5.682 11 C 0.210 3.790 12 H 0.001 0.999 13 C -0.124 4.124 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.286 1.286 22 C -0.063 4.063 23 C -0.120 4.120 24 C -0.101 4.101 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.331 0.669 37 H 0.004 0.996 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -18.911 -6.466 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.017 4.017 4 O -0.230 6.230 5 C 0.071 3.929 6 C -0.224 4.224 7 C -0.101 4.101 8 C -0.097 4.097 9 C -0.030 4.030 10 N -0.314 5.314 11 C 0.103 3.897 12 H 0.018 0.982 13 C -0.183 4.183 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.158 4.158 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.023 0.977 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.147 0.853 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.066 -19.270 -6.423 22.669 hybrid contribution -1.162 1.409 0.613 1.926 sum -11.227 -17.861 -5.810 21.882 Atomic orbital electron populations 1.21693 0.94383 1.02408 1.02253 1.21470 0.95928 0.95055 1.03586 1.22811 0.79064 0.98450 1.01336 1.86000 1.20698 1.27265 1.89085 1.18714 0.91694 0.83825 0.98625 1.21099 0.99466 0.92361 1.09447 1.20852 0.94254 0.96844 0.98175 1.19955 0.93133 0.95840 1.00763 1.20846 0.98442 0.90752 0.92970 1.60797 1.28159 1.32967 1.09439 1.19130 0.91503 0.82914 0.96135 0.98176 1.21713 0.98728 1.01455 0.96372 1.21265 1.30346 1.01290 1.02697 0.92239 1.24925 0.94984 0.97205 0.96935 1.69900 1.33113 1.15185 1.34709 0.86522 0.77815 0.79414 0.83797 1.20791 1.19833 1.21194 1.20797 0.99946 0.90232 0.97205 1.19222 0.90446 0.96095 1.06297 1.20566 0.98848 0.94552 1.01840 0.91823 0.92335 0.92392 0.90944 0.90887 0.92175 0.92276 0.86020 0.86094 0.95531 0.91052 0.85208 0.97691 0.90113 0.94947 0.92940 0.85304 0.91818 0.91671 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.90 6.30 -26.74 -0.17 -1.07 16 3 C 0.06 0.55 4.74 37.15 0.18 0.72 16 4 O -0.32 -3.96 9.18 -19.43 -0.18 -4.14 16 5 C 0.12 1.63 6.66 -39.21 -0.26 1.37 16 6 C -0.20 -2.77 9.04 -39.43 -0.36 -3.13 16 7 C -0.08 -1.23 9.69 -39.61 -0.38 -1.61 16 8 C -0.10 -1.57 5.39 -104.60 -0.56 -2.13 16 9 C 0.10 1.84 5.61 -4.98 -0.03 1.81 16 10 N -0.68 -14.93 6.29 -109.22 -0.69 -15.62 16 11 C 0.21 5.40 2.60 -68.87 -0.18 5.22 16 12 H 0.00 0.02 7.80 -51.92 -0.40 -0.39 16 13 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 14 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 15 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.06 -0.97 9.35 -39.60 -0.37 -1.34 16 23 C -0.12 -1.71 5.89 -104.47 -0.62 -2.33 16 24 C -0.10 -1.19 9.79 36.00 0.35 -0.83 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 35 H 0.07 1.33 7.38 -51.93 -0.38 0.94 16 36 H 0.33 7.17 8.21 -39.29 -0.32 6.84 16 37 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 44 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -29.57 356.92 -9.46 -39.04 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.51 Total: 3.55 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.08 Total: -19.63 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.06 Total: -40.60 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.18 Total: -4.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.57 -9.46 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474250649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.183 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds