Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46854 * 2 1 4 4 C 1.50697 * 109.47320 * 119.99629 * 2 1 3 5 5 C 1.38234 * 120.00498 * 252.22984 * 4 2 1 6 6 C 1.38235 * 120.00367 * 179.97438 * 5 4 2 7 7 C 1.38239 * 119.99779 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.38226 * 120.00297 * 359.97438 * 8 7 6 10 10 N 1.46900 * 109.47180 * 240.00171 * 2 1 3 11 11 C 1.46899 * 110.99881 * 168.37622 * 10 2 1 12 12 C 1.53007 * 109.47116 * 78.35146 * 11 10 2 13 13 O 1.42901 * 109.46965 * 62.24446 * 12 11 10 14 14 C 1.46900 * 111.00210 * 44.42286 * 10 2 1 15 15 C 1.52992 * 109.46902 * 190.00091 * 14 10 2 16 16 C 1.53004 * 109.46840 * 179.97438 * 15 14 10 17 17 C 1.50703 * 109.47136 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00036 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00010 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00106 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47009 * 59.99761 * 21 19 17 23 23 H 1.48501 * 109.47149 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47270 * 299.99904 * 21 19 17 25 25 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47104 * 299.99827 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99865 * 1 2 3 28 28 H 1.08005 * 120.00009 * 359.97438 * 5 4 2 29 29 H 1.07993 * 120.00057 * 179.69840 * 6 5 4 30 30 H 1.08000 * 119.99904 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.99565 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.00250 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.46955 * 198.34912 * 11 10 2 34 34 H 1.08999 * 109.47656 * 318.35348 * 11 10 2 35 35 H 1.08996 * 109.47106 * 182.24316 * 12 11 10 36 36 H 1.08996 * 109.46712 * 302.24057 * 12 11 10 37 37 H 0.96700 * 113.99457 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.46445 * 310.00193 * 14 10 2 39 39 H 1.08997 * 109.46715 * 69.99856 * 14 10 2 40 40 H 1.08991 * 109.47543 * 299.99570 * 15 14 10 41 41 H 1.09002 * 109.47255 * 60.00597 * 15 14 10 42 42 H 1.09004 * 109.47090 * 299.99628 * 16 15 14 43 43 H 1.09000 * 109.47129 * 59.99783 * 16 15 14 44 44 H 0.97002 * 119.99652 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.6072 0.0120 2.2593 6 6 3.0676 -0.6395 3.3883 7 6 2.9525 -2.0134 3.4885 8 6 2.3776 -2.7358 2.4597 9 6 1.9173 -2.0843 1.3308 10 7 2.0196 -0.6925 -1.1995 11 6 3.4616 -0.4774 -1.3796 12 6 4.2363 -1.3904 -0.4271 13 8 3.9593 -2.7557 -0.7452 14 6 1.2717 -0.2725 -2.3920 15 6 1.6316 -1.1841 -3.5668 16 6 0.8521 -0.7471 -4.8088 17 6 1.2062 -1.6454 -5.9659 18 1 1.9164 -2.4474 -5.8293 19 6 0.6241 -1.4426 -7.1993 20 7 -0.2404 -0.4656 -7.3657 21 14 1.0635 -2.5555 -8.6337 22 1 0.7120 -3.9586 -8.2974 23 1 0.3068 -2.1315 -9.8391 24 1 2.5205 -2.4617 -8.9049 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.6967 1.0855 2.1812 29 1 3.5211 -0.0757 4.1899 30 1 3.3125 -2.5225 4.3704 31 1 2.2874 -3.8092 2.5382 32 1 1.4678 -2.6486 0.5272 33 1 3.7375 -0.7080 -2.4086 34 1 3.7037 0.5630 -1.1629 35 1 5.3048 -1.2024 -0.5323 36 1 3.9311 -1.1872 0.5994 37 1 4.4178 -3.3921 -0.1797 38 1 0.2022 -0.3414 -2.1930 39 1 1.5298 0.7573 -2.6387 40 1 2.7010 -1.1152 -3.7658 41 1 1.3735 -2.2139 -3.3201 42 1 -0.2173 -0.8164 -4.6096 43 1 1.1098 0.2828 -5.0558 44 1 -0.6501 -0.3233 -8.2334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559664450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -22.766110 kcal Electronic energy + Delta-G solvation = -22048.331589 eV Core-core repulsion = 18965.559129 eV Total energy + Delta-G solvation = -3082.772460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02749 -37.73576 -36.11647 -33.93658 -32.42619 -31.04227 -30.89564 -29.94272 -27.73297 -25.99378 -23.79965 -22.63123 -22.48731 -21.60146 -20.04361 -19.46541 -17.27988 -16.79528 -16.26946 -15.73440 -15.54376 -15.33064 -14.61135 -14.40765 -14.03569 -13.74279 -13.49406 -13.26355 -13.09869 -12.83915 -12.69650 -12.31623 -11.98508 -11.72944 -11.65047 -11.35836 -11.22859 -10.94590 -10.88667 -10.75968 -10.55313 -10.44216 -10.25898 -9.80575 -9.47500 -9.23743 -9.00771 -8.91770 -8.51051 -8.27470 -7.97367 -5.93518 -3.94884 1.31342 1.42068 3.38319 3.41835 3.45307 3.74563 4.10160 4.50674 4.53013 4.72257 4.86665 4.95745 5.11965 5.23619 5.30066 5.33136 5.42295 5.43260 5.49400 5.57070 5.60681 5.71249 5.80573 5.85312 5.90881 5.97082 6.08215 6.10291 6.15200 6.25734 6.43129 6.45273 6.54328 6.67642 6.83627 6.90121 7.00469 7.23345 7.44293 7.50305 7.76660 7.89261 7.92093 8.07910 8.52105 9.12358 9.68686 11.17996 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.003690 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.537211 B = 7586.576187 C = 7994.797224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 H 0.044 0.956 4 C -0.065 4.065 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.074 4.074 10 N -0.518 5.518 11 C 0.051 3.949 12 C 0.072 3.928 13 O -0.547 6.547 14 C 0.049 3.951 15 C -0.101 4.101 16 C 0.022 3.978 17 C -0.516 4.516 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.364 0.636 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 0.277 22.410 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 H 0.061 0.939 4 C -0.066 4.066 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.092 4.092 10 N -0.242 5.242 11 C -0.077 4.077 12 C -0.006 4.006 13 O -0.350 6.350 14 C -0.077 4.077 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.208 0.792 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.281 0.160 21.860 22.745 hybrid contribution 0.818 0.155 -0.486 0.964 sum 7.099 0.315 21.374 22.524 Atomic orbital electron populations 1.22013 0.93509 1.03135 1.01936 1.20625 0.95640 0.94282 0.88818 0.93864 1.19812 0.97574 0.94311 0.94861 1.21033 0.99713 0.99582 0.94078 1.21012 1.01021 0.94680 0.97908 1.21099 1.00424 0.94261 0.98884 1.21193 0.99584 0.99838 0.94123 1.21116 0.97325 0.93877 0.96880 1.62034 1.02678 1.57102 1.02380 1.22219 0.88322 0.95910 1.01293 1.22458 0.96233 0.83007 0.98936 1.86670 1.72751 1.15110 1.60461 1.22457 0.98454 0.97270 0.89551 1.21637 0.99889 0.98533 0.93856 1.19074 0.95190 0.96370 0.90899 1.21236 1.24714 1.14803 0.94693 0.92728 1.25021 0.95209 0.95465 0.98824 1.69960 1.29113 1.30843 1.23869 0.86669 0.78451 0.81137 0.81808 1.20221 1.21376 1.20301 0.91387 0.92505 0.91268 0.86628 0.86602 0.86692 0.86362 0.84825 0.89235 0.94001 0.94959 0.92492 0.79186 0.90248 0.95633 0.93568 0.92468 0.96692 0.96989 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.31 37.15 0.31 -1.53 16 2 C 0.11 1.48 2.33 -68.87 -0.16 1.32 16 3 H 0.04 0.55 7.59 -51.92 -0.39 0.15 16 4 C -0.07 -0.77 2.60 -104.62 -0.27 -1.04 16 5 C -0.13 -1.31 9.03 -39.58 -0.36 -1.67 16 6 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 8 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 9 C -0.07 -0.88 6.87 -39.58 -0.27 -1.15 16 10 N -0.52 -7.87 3.84 -228.04 -0.88 -8.75 16 11 C 0.05 0.74 5.25 -3.82 -0.02 0.72 16 12 C 0.07 0.92 6.41 37.16 0.24 1.15 16 13 O -0.55 -7.50 12.77 -35.23 -0.45 -7.95 16 14 C 0.05 0.87 4.42 -3.83 -0.02 0.86 16 15 C -0.10 -2.19 5.13 -26.73 -0.14 -2.33 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 18 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 28 H 0.12 1.06 7.98 -52.48 -0.42 0.64 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.82 7.96 -52.49 -0.42 1.41 16 33 H 0.09 1.49 5.85 -51.93 -0.30 1.18 16 34 H 0.04 0.56 7.74 -51.93 -0.40 0.16 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.69 4.01 -51.93 -0.21 0.49 16 37 H 0.36 3.47 9.12 45.56 0.42 3.89 16 38 H 0.08 1.38 5.55 -51.93 -0.29 1.10 16 39 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.05 1.01 6.24 -51.93 -0.32 0.68 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -31.80 346.05 -9.25 -41.05 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.42 Total: 2.01 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -2.43 Total: -21.97 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.14 Total: -35.54 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.45 Total: -7.95 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.80 -9.25 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559664450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds