Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46854 * 2 1 4 4 C 1.50697 * 109.47320 * 119.99629 * 2 1 3 5 5 C 1.38234 * 120.00498 * 252.22984 * 4 2 1 6 6 C 1.38235 * 120.00367 * 179.97438 * 5 4 2 7 7 C 1.38239 * 119.99779 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.38226 * 120.00297 * 359.97438 * 8 7 6 10 10 N 1.46900 * 109.47180 * 240.00171 * 2 1 3 11 11 C 1.46899 * 110.99881 * 168.37622 * 10 2 1 12 12 C 1.53007 * 109.47116 * 78.35146 * 11 10 2 13 13 O 1.42901 * 109.46965 * 62.24446 * 12 11 10 14 14 C 1.46900 * 111.00210 * 44.42286 * 10 2 1 15 15 C 1.52992 * 109.46902 * 190.00091 * 14 10 2 16 16 C 1.53004 * 109.46840 * 179.97438 * 15 14 10 17 17 C 1.50703 * 109.47136 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00036 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00010 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99860 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00106 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47009 * 59.99761 * 21 19 17 23 23 H 1.48501 * 109.47149 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47270 * 299.99904 * 21 19 17 25 25 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47104 * 299.99827 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99865 * 1 2 3 28 28 H 1.08005 * 120.00009 * 359.97438 * 5 4 2 29 29 H 1.07993 * 120.00057 * 179.69840 * 6 5 4 30 30 H 1.08000 * 119.99904 * 179.97438 * 7 6 5 31 31 H 1.08005 * 119.99565 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.00250 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.46955 * 198.34912 * 11 10 2 34 34 H 1.08999 * 109.47656 * 318.35348 * 11 10 2 35 35 H 1.08996 * 109.47106 * 182.24316 * 12 11 10 36 36 H 1.08996 * 109.46712 * 302.24057 * 12 11 10 37 37 H 0.96700 * 113.99457 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.46445 * 310.00193 * 14 10 2 39 39 H 1.08997 * 109.46715 * 69.99856 * 14 10 2 40 40 H 1.08991 * 109.47543 * 299.99570 * 15 14 10 41 41 H 1.09002 * 109.47255 * 60.00597 * 15 14 10 42 42 H 1.09004 * 109.47090 * 299.99628 * 16 15 14 43 43 H 1.09000 * 109.47129 * 59.99783 * 16 15 14 44 44 H 0.97002 * 119.99652 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.6072 0.0120 2.2593 6 6 3.0676 -0.6395 3.3883 7 6 2.9525 -2.0134 3.4885 8 6 2.3776 -2.7358 2.4597 9 6 1.9173 -2.0843 1.3308 10 7 2.0196 -0.6925 -1.1995 11 6 3.4616 -0.4774 -1.3796 12 6 4.2363 -1.3904 -0.4271 13 8 3.9593 -2.7557 -0.7452 14 6 1.2717 -0.2725 -2.3920 15 6 1.6316 -1.1841 -3.5668 16 6 0.8521 -0.7471 -4.8088 17 6 1.2062 -1.6454 -5.9659 18 1 1.9164 -2.4474 -5.8293 19 6 0.6241 -1.4426 -7.1993 20 7 -0.2404 -0.4656 -7.3657 21 14 1.0635 -2.5555 -8.6337 22 1 0.7120 -3.9586 -8.2974 23 1 0.3068 -2.1315 -9.8391 24 1 2.5205 -2.4617 -8.9049 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.6967 1.0855 2.1812 29 1 3.5211 -0.0757 4.1899 30 1 3.3125 -2.5225 4.3704 31 1 2.2874 -3.8092 2.5382 32 1 1.4678 -2.6486 0.5272 33 1 3.7375 -0.7080 -2.4086 34 1 3.7037 0.5630 -1.1629 35 1 5.3048 -1.2024 -0.5323 36 1 3.9311 -1.1872 0.5994 37 1 4.4178 -3.3921 -0.1797 38 1 0.2022 -0.3414 -2.1930 39 1 1.5298 0.7573 -2.6387 40 1 2.7010 -1.1152 -3.7658 41 1 1.3735 -2.2139 -3.3201 42 1 -0.2173 -0.8164 -4.6096 43 1 1.1098 0.2828 -5.0558 44 1 -0.6501 -0.3233 -8.2334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559664450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -43.116838 kcal Electronic energy + Delta-G solvation = -22049.214063 eV Core-core repulsion = 18965.559129 eV Total energy + Delta-G solvation = -3083.654934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96978 -38.79196 -37.20107 -35.82111 -34.00226 -32.54909 -31.66861 -31.02934 -29.09194 -27.59783 -25.24795 -23.76178 -23.46842 -22.89751 -21.51920 -20.67838 -18.48240 -18.29348 -17.59764 -16.92036 -16.78632 -16.40879 -16.20342 -15.82721 -15.12129 -14.89511 -14.67497 -14.26407 -14.22055 -14.04773 -13.97033 -13.68894 -13.48656 -13.24531 -12.93227 -12.72959 -12.62001 -12.47724 -12.32647 -12.12105 -11.83557 -11.75600 -11.58840 -11.39434 -11.23785 -11.06454 -10.73407 -10.53949 -9.69130 -9.36099 -9.18391 -8.19995 -6.30818 0.52811 0.64141 1.38843 1.42485 1.50463 2.40911 2.82231 3.07252 3.12653 3.53436 3.79587 4.02774 4.10396 4.19990 4.26649 4.29509 4.35929 4.41780 4.46775 4.52025 4.64087 4.67293 4.71197 4.73803 4.81032 4.86162 4.90571 4.95586 5.07170 5.15184 5.20429 5.24504 5.29921 5.31693 5.52965 5.67300 5.74993 5.76875 5.83533 5.87062 6.13384 6.22412 6.27247 6.32828 6.85165 7.06876 7.37987 8.91731 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030083 B = 0.003690 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.537211 B = 7586.576187 C = 7994.797224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.115 3.885 3 H 0.050 0.950 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.132 4.132 9 C -0.086 4.086 10 N -0.522 5.522 11 C 0.046 3.954 12 C 0.078 3.922 13 O -0.570 6.570 14 C 0.062 3.938 15 C -0.083 4.083 16 C 0.028 3.972 17 C -0.544 4.544 18 H 0.055 0.945 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.381 0.619 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.043 0.957 41 H 0.044 0.956 42 H -0.007 1.007 43 H -0.010 1.010 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -0.151 24.163 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.076 4.076 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.150 4.150 9 C -0.105 4.105 10 N -0.246 5.246 11 C -0.082 4.082 12 C 0.000 4.000 13 O -0.376 6.376 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.009 4.009 17 C -0.582 4.582 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.573 5.573 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.011 0.989 43 H 0.009 0.991 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.607 -0.278 23.640 24.835 hybrid contribution 0.411 0.292 -0.952 1.078 sum 8.018 0.014 22.688 24.063 Atomic orbital electron populations 1.21980 0.93435 1.02550 1.02346 1.20675 0.95793 0.94544 0.88237 0.93189 1.19679 0.98890 0.94267 0.94802 1.21203 0.99329 1.00276 0.93955 1.21332 1.00178 0.94956 0.97997 1.21409 0.99355 0.94424 0.99181 1.21350 0.99273 1.00631 0.93743 1.20950 0.98442 0.93962 0.97110 1.61971 1.02929 1.57728 1.01998 1.22284 0.88086 0.97354 1.00450 1.22412 0.96625 0.82268 0.98656 1.86623 1.73510 1.15954 1.61477 1.22158 0.98914 0.95973 0.89504 1.21344 0.98772 0.98459 0.93512 1.18956 0.94388 0.94912 0.92677 1.21644 1.25126 1.15383 0.96026 0.92721 1.25968 0.94847 0.96993 1.01908 1.70087 1.29955 1.32409 1.24850 0.85513 0.78625 0.79092 0.77903 1.19254 1.20518 1.19224 0.92451 0.90621 0.92261 0.85385 0.84170 0.84258 0.85153 0.87349 0.91815 0.92660 0.93426 0.91507 0.77191 0.90189 0.95847 0.93865 0.93710 0.98907 0.99128 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.31 71.98 0.60 -2.99 16 2 C 0.12 2.91 2.33 44.17 0.10 3.01 16 3 H 0.05 1.20 7.59 -2.38 -0.02 1.18 16 4 C -0.08 -1.68 2.60 -19.87 -0.05 -1.74 16 5 C -0.13 -2.36 9.03 22.27 0.20 -2.16 16 6 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 7 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 8 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 9 C -0.09 -1.98 6.87 22.27 0.15 -1.83 16 10 N -0.52 -16.03 3.84 -875.39 -3.36 -19.39 16 11 C 0.05 1.34 5.25 86.31 0.45 1.79 16 12 C 0.08 1.90 6.41 71.98 0.46 2.36 16 13 O -0.57 -15.29 12.77 -148.98 -1.90 -17.19 16 14 C 0.06 2.27 4.42 86.30 0.38 2.65 16 15 C -0.08 -3.75 5.13 30.59 0.16 -3.59 16 16 C 0.03 1.57 4.97 29.85 0.15 1.72 16 17 C -0.54 -32.57 9.11 25.60 0.23 -32.34 16 18 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.00 0.03 5.46 84.65 0.46 0.49 16 20 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 21 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H 0.06 1.52 8.03 -2.39 -0.02 1.50 16 26 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.06 1.55 6.13 -2.38 -0.01 1.53 16 28 H 0.13 1.98 7.98 -2.91 -0.02 1.95 16 29 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 31 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.11 3.03 7.96 -2.91 -0.02 3.01 16 33 H 0.06 2.16 5.85 -2.39 -0.01 2.15 16 34 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.51 4.01 -2.39 -0.01 1.50 16 37 H 0.38 6.85 9.12 -74.06 -0.68 6.18 16 38 H 0.08 2.91 5.55 -2.39 -0.01 2.89 16 39 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.04 1.96 6.24 -2.39 -0.01 1.94 16 41 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 42 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.14 346.05 1.32 -67.82 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.30 Total: 17.14 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.97 Total: -38.23 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -3.08 Total: -77.33 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.90 Total: -17.19 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.14 1.32 -67.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559664450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds