Wall clock time and date at job start Mon Mar 30 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46822 * 2 1 4 4 C 1.52998 * 109.47270 * 119.99900 * 2 1 3 5 5 H 1.09007 * 109.46921 * 300.00254 * 4 2 1 6 6 C 1.52995 * 109.47122 * 60.00015 * 4 2 1 7 7 N 1.46496 * 109.47183 * 180.02562 * 4 2 1 8 8 C 1.39663 * 120.00184 * 154.99872 * 7 4 2 9 9 C 1.38972 * 120.04890 * 0.02562 * 8 7 4 10 10 C 1.38114 * 120.03969 * 180.02562 * 9 8 7 11 11 C 1.38217 * 120.12557 * 359.97438 * 10 9 8 12 12 C 1.38768 * 120.09287 * 359.97438 * 11 10 9 13 13 O 1.35904 * 120.01829 * 180.02562 * 12 11 10 14 14 C 1.42903 * 116.99628 * 0.02562 * 13 12 11 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00093 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 C 1.38616 * 119.96821 * 0.30037 * 12 11 10 25 25 H 1.09007 * 109.47501 * 299.99577 * 1 2 3 26 26 H 1.09005 * 109.47754 * 59.99940 * 1 2 3 27 27 H 1.09005 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46963 * 240.00603 * 2 1 3 29 29 H 1.08995 * 109.46844 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47277 * 300.00245 * 3 2 1 31 31 H 1.08997 * 109.46732 * 60.00001 * 3 2 1 32 32 H 1.09007 * 109.47155 * 59.99765 * 6 4 2 33 33 H 1.08998 * 109.47282 * 179.97438 * 6 4 2 34 34 H 1.09006 * 109.47491 * 300.00271 * 6 4 2 35 35 H 0.97008 * 119.99867 * 334.99726 * 7 4 2 36 36 H 1.08001 * 119.97939 * 359.97438 * 9 8 7 37 37 H 1.08001 * 119.93596 * 180.02562 * 10 9 8 38 38 H 1.08005 * 119.95190 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.47382 * 59.99787 * 14 13 12 40 40 H 1.09001 * 109.46938 * 299.99774 * 14 13 12 41 41 H 1.09001 * 109.47194 * 299.99575 * 15 14 13 42 42 H 1.08992 * 109.47399 * 59.99748 * 15 14 13 43 43 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 44 44 H 1.07994 * 120.06528 * 179.70100 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 3.5050 -0.7207 1.2495 8 6 4.2031 -0.8260 2.4545 9 6 3.5091 -0.9318 3.6539 10 6 4.1997 -1.0354 4.8455 11 6 5.5819 -1.0346 4.8486 12 6 6.2803 -0.9302 3.6540 13 8 7.6393 -0.9301 3.6587 14 6 8.2836 -1.0412 4.9294 15 6 9.8011 -1.0229 4.7351 16 6 10.4805 -1.1406 6.0751 17 1 9.8891 -1.2201 6.9752 18 6 11.8572 -1.1469 6.1518 19 7 12.5773 -1.0507 5.0556 20 14 12.6994 -1.2922 7.8128 21 1 12.2980 -2.5664 8.4615 22 1 14.1723 -1.2758 7.6241 23 1 12.2974 -0.1506 8.6732 24 6 5.5911 -0.8203 2.4563 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 1.8934 -2.6775 0.3592 33 1 1.8938 -2.6776 2.1390 34 1 0.4400 -2.1638 1.2492 35 1 3.9901 -0.6472 0.4127 36 1 2.4291 -0.9323 3.6543 37 1 3.6587 -1.1180 5.7766 38 1 6.1191 -1.1161 5.7820 39 1 7.9891 -1.9764 5.4057 40 1 7.9884 -0.2032 5.5609 41 1 10.0966 -1.8606 4.1034 42 1 10.0952 -0.0876 4.2591 43 1 13.5458 -1.0555 5.1095 44 1 6.1330 -0.7341 1.5262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037777363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:21 Heat of formation + Delta-G solvation = -38.679611 kcal Electronic energy + Delta-G solvation = -20815.868709 eV Core-core repulsion = 17732.406188 eV Total energy + Delta-G solvation = -3083.462521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85198 -38.54160 -36.73994 -33.75921 -33.27050 -30.98123 -30.33970 -29.03712 -28.40280 -26.97317 -24.98511 -23.63547 -22.60063 -21.66523 -20.31078 -20.06709 -17.95927 -16.50986 -16.35959 -15.63469 -15.47317 -15.22121 -14.99090 -14.62766 -14.39603 -14.17045 -13.83243 -13.33389 -13.03667 -12.80873 -12.62097 -12.48724 -12.35855 -12.27678 -11.96020 -11.59026 -11.49379 -11.30421 -11.15100 -11.06899 -10.85065 -10.79600 -10.71089 -10.39755 -9.95420 -9.67031 -9.60929 -9.27168 -8.41821 -7.90230 -7.26658 -6.07130 -4.11561 1.76528 1.92483 3.26451 3.31001 3.35205 3.37550 4.04959 4.16614 4.31655 4.45413 4.55173 4.69161 5.02464 5.12012 5.14492 5.17446 5.29083 5.31049 5.40162 5.44419 5.51372 5.55644 5.59232 5.62270 5.69162 5.71181 5.82308 5.93334 5.93918 6.07816 6.11863 6.13670 6.18213 6.47063 6.66805 6.71764 6.81327 6.94179 7.45054 7.55860 7.68836 7.73474 7.87273 8.15997 8.28399 8.93934 9.52411 11.04468 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044427 B = 0.002631 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.097371 B =10640.699242 C =10950.960987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.147 4.147 4 C 0.155 3.845 5 H 0.079 0.921 6 C -0.172 4.172 7 N -0.742 5.742 8 C 0.250 3.750 9 C -0.246 4.246 10 C -0.037 4.037 11 C -0.266 4.266 12 C 0.188 3.812 13 O -0.317 6.317 14 C 0.067 3.933 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.240 4.240 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.397 0.603 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.264 0.736 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.804 1.345 -8.983 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.049 3.951 5 H 0.097 0.903 6 C -0.231 4.231 7 N -0.372 5.372 8 C 0.147 3.853 9 C -0.268 4.268 10 C -0.056 4.056 11 C -0.286 4.286 12 C 0.140 3.860 13 O -0.230 6.230 14 C -0.007 4.007 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.263 4.263 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.654 1.367 -9.168 26.339 hybrid contribution 0.705 -0.110 0.794 1.067 sum -23.950 1.257 -8.374 25.402 Atomic orbital electron populations 1.21866 0.94369 1.02131 1.02080 1.21373 0.96312 0.96700 0.97842 1.21823 1.01616 0.95320 1.01672 1.20906 0.80357 0.95459 0.98363 0.90336 1.22368 1.00943 0.97038 1.02701 1.44654 1.04637 1.82131 1.05805 1.17344 0.89962 0.91820 0.86142 1.20412 0.98980 1.16113 0.91310 1.20615 0.93349 0.94576 0.97070 1.21133 0.95065 1.14774 0.97646 1.18824 0.83508 0.90567 0.93137 1.86146 1.15124 1.86334 1.35352 1.23305 0.96337 0.99586 0.81517 1.19122 0.85286 0.98793 0.98007 1.20946 0.91472 1.51721 0.92263 0.92402 1.24992 0.97404 0.94974 0.96848 1.69965 1.05985 1.49567 1.27326 0.86547 0.78295 0.78756 0.83769 1.20097 1.21146 1.20091 1.19667 0.91577 1.17945 0.97119 0.92445 0.92417 0.92120 0.90890 0.92199 0.92773 0.92603 0.92489 0.92000 0.91781 0.76858 0.86666 0.86463 0.85661 0.93118 0.93122 0.95453 0.95451 0.92682 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 2 C -0.10 -0.68 2.56 -90.62 -0.23 -0.91 16 3 C -0.15 -1.06 9.04 37.16 0.34 -0.72 16 4 C 0.15 1.26 1.85 -67.94 -0.13 1.13 16 5 H 0.08 0.68 6.48 -51.93 -0.34 0.35 16 6 C -0.17 -1.33 9.07 37.15 0.34 -0.99 16 7 N -0.74 -7.58 4.55 -52.19 -0.24 -7.82 16 8 C 0.25 3.37 6.63 -83.81 -0.56 2.81 16 9 C -0.25 -3.21 8.84 -39.36 -0.35 -3.56 16 10 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 11 C -0.27 -4.43 9.04 -39.39 -0.36 -4.79 16 12 C 0.19 3.46 6.68 -39.25 -0.26 3.20 16 13 O -0.32 -6.82 10.13 -19.44 -0.20 -7.02 16 14 C 0.07 1.48 4.68 37.16 0.17 1.65 16 15 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 16 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.24 -3.84 9.83 -39.23 -0.39 -4.23 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 7.44 -51.93 -0.39 0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 34 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 35 H 0.40 3.67 8.40 -40.82 -0.34 3.33 16 36 H 0.12 1.26 6.11 -52.49 -0.32 0.94 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 2.07 6.29 -52.48 -0.33 1.74 16 39 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 40 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -30.52 353.74 -8.78 -39.30 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.35 Total: 0.66 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.05 Total: -20.87 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.50 Total: -33.89 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.52 -8.78 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037777363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.620 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds