Wall clock time and date at job start Mon Mar 30 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.52995 * 109.47490 * 59.99635 * 15 13 12 17 17 C 1.52998 * 109.47239 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47285 * 60.00065 * 17 16 15 19 19 C 1.53001 * 109.46626 * 300.00094 * 18 17 16 20 20 C 1.52999 * 109.47205 * 299.99531 * 19 18 17 21 21 C 1.52993 * 109.46873 * 60.00597 * 20 19 18 22 22 C 1.52999 * 109.47306 * 300.00068 * 17 16 15 23 23 C 1.52998 * 109.47592 * 59.99643 * 21 20 19 24 24 C 1.52998 * 109.47365 * 59.99956 * 19 18 17 25 25 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 26 26 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.09001 * 109.46983 * 299.99719 * 16 15 13 31 31 H 1.08995 * 109.47139 * 60.00165 * 16 15 13 32 32 H 1.09001 * 109.47042 * 180.02562 * 17 16 15 33 33 H 1.08990 * 109.47379 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46391 * 59.99493 * 18 17 16 35 35 H 1.09009 * 109.46707 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46891 * 300.00326 * 20 19 18 37 37 H 1.09001 * 109.47054 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47143 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.47276 * 299.99745 * 22 17 16 40 40 H 1.09003 * 109.47160 * 179.97438 * 22 17 16 41 41 H 1.09000 * 109.47250 * 179.97438 * 23 21 20 42 42 H 1.09007 * 109.46897 * 60.00287 * 23 21 20 43 43 H 1.09001 * 109.47042 * 179.97438 * 24 19 18 44 44 H 1.09001 * 109.47080 * 59.99830 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 6 4.0418 -1.2822 3.3305 17 6 4.5461 -2.0045 4.5815 18 6 3.6003 -3.1586 4.9201 19 6 2.1966 -2.6080 5.1800 20 6 2.2430 -1.6259 6.3522 21 6 3.1887 -0.4719 6.0136 22 6 4.5924 -1.0224 5.7537 23 6 2.6845 0.2504 4.7626 24 6 1.6924 -1.8857 3.9291 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 4.0089 -1.9816 2.4951 31 1 4.7157 -0.4601 3.0897 32 1 5.5463 -2.3963 4.3964 33 1 3.9592 -3.6729 5.8115 34 1 3.5673 -3.8582 4.0849 35 1 1.5227 -3.4303 5.4208 36 1 2.6021 -2.1405 7.2434 37 1 1.2429 -1.2340 6.5376 38 1 3.2214 0.2280 6.8485 39 1 5.2662 -0.2003 5.5125 40 1 4.9512 -1.5372 6.6450 41 1 3.3581 1.0728 4.5216 42 1 1.6845 0.6427 4.9478 43 1 0.6922 -1.4939 4.1141 44 1 1.6594 -2.5854 3.0940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:51 Heat of formation + Delta-G solvation = -79.249525 kcal Electronic energy + Delta-G solvation = -23138.518020 eV Core-core repulsion = 20053.296256 eV Total energy + Delta-G solvation = -3085.221764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57708 -38.37122 -34.77446 -33.02007 -32.62395 -32.46302 -31.98549 -28.66471 -25.91192 -25.77640 -25.22921 -23.09562 -21.44474 -21.41205 -20.50221 -19.11991 -17.71160 -16.82518 -15.60758 -15.24248 -14.59176 -14.46224 -14.39081 -14.34001 -14.14638 -13.66310 -13.29485 -13.13041 -12.83120 -12.66323 -12.43780 -12.36927 -12.24995 -11.62869 -11.08202 -10.97063 -10.90030 -10.87149 -10.83358 -10.78301 -10.74811 -10.64837 -10.29191 -10.22020 -10.21254 -9.62785 -9.61619 -9.00449 -8.70974 -8.51339 -7.82877 -6.10219 -4.19190 3.24406 3.32167 3.34837 3.48181 4.10856 4.37698 4.49959 4.55333 4.68953 5.07224 5.13157 5.21506 5.22186 5.23035 5.24348 5.36380 5.37715 5.40924 5.43371 5.68502 5.72006 5.78015 5.81502 5.98467 5.98687 6.01253 6.07896 6.09113 6.17456 6.20534 6.29886 6.39904 6.49965 6.57724 6.58860 6.86249 7.00516 7.19287 7.52541 7.61368 7.73291 7.95573 8.18433 8.74196 8.82612 9.21727 9.48953 10.95802 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.004743 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.847177 B = 5901.993992 C = 6218.774414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.557 6.557 15 C -0.071 4.071 16 C -0.100 4.100 17 C -0.084 4.084 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.108 4.108 21 C -0.087 4.087 22 C -0.108 4.108 23 C -0.085 4.085 24 C -0.099 4.099 25 H 0.014 0.986 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -7.971 16.576 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.294 3.706 14 O -0.436 6.436 15 C -0.075 4.075 16 C -0.138 4.138 17 C -0.102 4.102 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.105 4.105 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.137 4.137 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.730 -6.996 16.420 18.465 hybrid contribution 0.340 -0.871 -1.012 1.378 sum 5.070 -7.866 15.408 18.028 Atomic orbital electron populations 1.22067 0.98589 0.98999 1.00804 1.18717 0.90946 0.93956 0.80213 0.93529 1.21258 1.32223 1.13102 0.90364 0.92122 1.24890 0.94850 0.94964 0.99045 1.69916 1.35994 1.22526 1.23697 0.86409 0.78597 0.79526 0.82649 1.19761 1.20901 1.20897 1.46513 1.65004 1.13467 1.10441 1.20353 0.78293 0.87286 0.84620 1.90632 1.51415 1.16237 1.85288 1.20706 0.96242 0.96190 0.94344 1.21528 0.94763 1.00016 0.97453 1.21042 0.98651 0.95521 0.95018 1.21550 0.94756 0.97074 1.01131 1.21040 0.96690 0.97400 0.95085 1.21545 0.99481 0.96206 0.97286 1.21093 0.94929 0.96745 0.97750 1.21549 0.96618 0.98614 0.97747 1.21295 1.02081 0.96620 0.92299 1.21523 0.98273 0.96190 0.97716 0.96733 0.89244 0.95562 0.92682 0.78089 0.91327 0.91506 0.91172 0.92172 0.91831 0.91199 0.92236 0.92009 0.91289 0.91978 0.92243 0.91430 0.91476 0.91590 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.82 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.71 -14.99 4.86 -54.93 -0.27 -15.26 16 13 C 0.51 10.40 6.44 -10.99 -0.07 10.33 16 14 O -0.56 -13.68 15.65 5.55 0.09 -13.60 16 15 C -0.07 -1.08 0.61 -155.66 -0.10 -1.17 16 16 C -0.10 -1.33 4.37 -26.73 -0.12 -1.45 16 17 C -0.08 -0.89 3.19 -90.62 -0.29 -1.18 16 18 C -0.11 -1.05 5.19 -26.73 -0.14 -1.19 16 19 C -0.08 -0.88 3.19 -90.62 -0.29 -1.17 16 20 C -0.11 -1.09 5.19 -26.74 -0.14 -1.23 16 21 C -0.09 -0.96 3.19 -90.62 -0.29 -1.25 16 22 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 23 C -0.09 -1.22 3.76 -26.73 -0.10 -1.32 16 24 C -0.10 -1.30 4.37 -26.73 -0.12 -1.42 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 7.22 7.38 -40.82 -0.30 6.92 16 30 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.88 7.57 -51.93 -0.39 0.48 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -30.11 327.50 -9.32 -39.43 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.67 Total: 5.09 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.01 Total: -11.82 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.36 Total: -39.80 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.11 -9.32 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.818 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds