Wall clock time and date at job start Mon Mar 30 2020 01:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.52995 * 109.47490 * 59.99635 * 15 13 12 17 17 C 1.52998 * 109.47239 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47285 * 60.00065 * 17 16 15 19 19 C 1.53001 * 109.46626 * 300.00094 * 18 17 16 20 20 C 1.52999 * 109.47205 * 299.99531 * 19 18 17 21 21 C 1.52993 * 109.46873 * 60.00597 * 20 19 18 22 22 C 1.52999 * 109.47306 * 300.00068 * 17 16 15 23 23 C 1.52998 * 109.47592 * 59.99643 * 21 20 19 24 24 C 1.52998 * 109.47365 * 59.99956 * 19 18 17 25 25 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 26 26 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 27 27 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 30 30 H 1.09001 * 109.46983 * 299.99719 * 16 15 13 31 31 H 1.08995 * 109.47139 * 60.00165 * 16 15 13 32 32 H 1.09001 * 109.47042 * 180.02562 * 17 16 15 33 33 H 1.08990 * 109.47379 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46391 * 59.99493 * 18 17 16 35 35 H 1.09009 * 109.46707 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46891 * 300.00326 * 20 19 18 37 37 H 1.09001 * 109.47054 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47143 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.47276 * 299.99745 * 22 17 16 40 40 H 1.09003 * 109.47160 * 179.97438 * 22 17 16 41 41 H 1.09000 * 109.47250 * 179.97438 * 23 21 20 42 42 H 1.09007 * 109.46897 * 60.00287 * 23 21 20 43 43 H 1.09001 * 109.47042 * 179.97438 * 24 19 18 44 44 H 1.09001 * 109.47080 * 59.99830 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 6 4.0418 -1.2822 3.3305 17 6 4.5461 -2.0045 4.5815 18 6 3.6003 -3.1586 4.9201 19 6 2.1966 -2.6080 5.1800 20 6 2.2430 -1.6259 6.3522 21 6 3.1887 -0.4719 6.0136 22 6 4.5924 -1.0224 5.7537 23 6 2.6845 0.2504 4.7626 24 6 1.6924 -1.8857 3.9291 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7088 1.1614 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 4.0089 -1.9816 2.4951 31 1 4.7157 -0.4601 3.0897 32 1 5.5463 -2.3963 4.3964 33 1 3.9592 -3.6729 5.8115 34 1 3.5673 -3.8582 4.0849 35 1 1.5227 -3.4303 5.4208 36 1 2.6021 -2.1405 7.2434 37 1 1.2429 -1.2340 6.5376 38 1 3.2214 0.2280 6.8485 39 1 5.2662 -0.2003 5.5125 40 1 4.9512 -1.5372 6.6450 41 1 3.3581 1.0728 4.5216 42 1 1.6845 0.6427 4.9478 43 1 0.6922 -1.4939 4.1141 44 1 1.6594 -2.5854 3.0940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:50 Heat of formation + Delta-G solvation = -96.698569 kcal Electronic energy + Delta-G solvation = -23139.274668 eV Core-core repulsion = 20053.296256 eV Total energy + Delta-G solvation = -3085.978412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65345 -40.01611 -36.75365 -34.58444 -33.63973 -33.50428 -33.40869 -30.61173 -27.37780 -26.83665 -26.73172 -24.61924 -22.54787 -22.31612 -22.07159 -20.84324 -19.02414 -18.27542 -17.27416 -17.16843 -16.17436 -15.85453 -15.43485 -15.33410 -15.28705 -15.06637 -14.49859 -14.22368 -14.18013 -14.10904 -13.92301 -13.61795 -13.30716 -13.30111 -12.98046 -12.87693 -12.75104 -12.31116 -12.13799 -11.84164 -11.81922 -11.78949 -11.70615 -11.69848 -11.38711 -11.12103 -10.64626 -10.53426 -10.51847 -10.24599 -9.74772 -8.19261 -6.37230 1.43117 1.43719 1.56260 1.82103 2.34303 2.62400 3.10997 3.52528 3.59957 3.60474 4.07964 4.18293 4.23889 4.29485 4.30001 4.31909 4.33735 4.45875 4.46358 4.69887 4.74828 4.83153 4.84901 4.87571 4.88783 5.01248 5.06635 5.13405 5.14414 5.18215 5.20367 5.23182 5.27278 5.30289 5.40594 5.52491 5.56626 5.61321 5.63086 5.64428 5.66804 5.88973 6.07722 6.70840 6.96469 7.30624 7.55638 8.87473 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.004743 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.847177 B = 5901.993992 C = 6218.774414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.701 5.701 13 C 0.502 3.498 14 O -0.606 6.606 15 C -0.061 4.061 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.106 4.106 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.085 4.085 24 C -0.099 4.099 25 H 0.008 0.992 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -11.287 18.031 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.210 1.210 12 N -0.349 5.349 13 C 0.290 3.710 14 O -0.488 6.488 15 C -0.065 4.065 16 C -0.138 4.138 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.098 4.098 20 C -0.144 4.144 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.123 4.123 24 C -0.137 4.137 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.122 -10.351 17.902 21.566 hybrid contribution -0.120 0.277 -1.472 1.502 sum 6.002 -10.074 16.430 20.185 Atomic orbital electron populations 1.21881 0.98390 0.99401 0.99358 1.18333 0.91071 0.91751 0.82245 0.98898 1.21548 1.32516 1.13477 0.90729 0.90910 1.25835 0.94835 0.95576 1.02418 1.70067 1.37057 1.24030 1.24568 0.85259 0.78116 0.78503 0.78221 1.18259 1.20322 1.20955 1.46274 1.64997 1.14033 1.09603 1.21465 0.76888 0.86888 0.85792 1.90600 1.53372 1.18712 1.86158 1.20687 0.97814 0.96624 0.91329 1.21563 0.92964 0.99697 0.99560 1.21063 0.99732 0.95701 0.93299 1.21567 0.93530 0.96569 1.02516 1.21065 0.97764 0.97616 0.93331 1.21566 0.99010 0.95668 0.98129 1.21094 0.95913 0.97248 0.95801 1.21571 0.95606 0.98553 0.98674 1.21295 1.00556 0.96351 0.94114 1.21561 0.97019 0.95392 0.99712 0.97309 0.91480 0.94009 0.92543 0.76319 0.91241 0.93326 0.89431 0.89587 0.91404 0.89266 0.89483 0.92542 0.90212 0.92687 0.89465 0.93757 0.93578 0.93060 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 2 C 0.27 14.57 2.56 44.25 0.11 14.68 16 3 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16 4 C -0.54 -29.49 8.73 25.60 0.22 -29.27 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.70 -30.69 4.86 -446.09 -2.17 -32.86 16 13 C 0.50 21.51 6.44 87.66 0.56 22.07 16 14 O -0.61 -31.98 15.65 -3.04 -0.05 -32.03 16 15 C -0.06 -1.87 0.61 -52.93 -0.03 -1.90 16 16 C -0.10 -2.58 4.37 30.59 0.13 -2.45 16 17 C -0.08 -1.43 3.19 -10.79 -0.03 -1.47 16 18 C -0.10 -1.57 5.19 30.60 0.16 -1.41 16 19 C -0.08 -1.39 3.19 -10.79 -0.03 -1.43 16 20 C -0.11 -1.79 5.19 30.59 0.16 -1.63 16 21 C -0.08 -1.65 3.19 -10.80 -0.03 -1.68 16 22 C -0.11 -1.83 5.19 30.60 0.16 -1.68 16 23 C -0.09 -2.51 3.76 30.59 0.12 -2.39 16 24 C -0.10 -2.48 4.37 30.59 0.13 -2.35 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.40 15.03 7.38 -92.71 -0.68 14.35 16 30 H 0.07 1.76 7.56 -2.39 -0.02 1.74 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.05 1.51 8.10 -2.38 -0.02 1.49 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.71 7.57 -2.39 -0.02 1.69 16 Total: -1.00 -68.73 327.50 3.08 -65.65 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.28 Total: 24.25 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 2.74 Total: -16.00 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -1.92 Total: -86.38 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.05 Total: -32.03 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.73 3.08 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.052 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds