Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46902 * 109.46497 * 2 1 4 4 C 1.46907 * 110.99721 * 159.94189 * 3 2 1 5 5 C 1.52996 * 109.47031 * 287.36395 * 4 3 2 6 6 C 1.50706 * 109.46645 * 183.54453 * 5 4 3 7 7 H 1.08003 * 120.00476 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99762 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00281 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47457 * 89.99856 * 10 8 6 12 12 H 1.48500 * 109.47189 * 210.00065 * 10 8 6 13 13 H 1.48508 * 109.46995 * 329.99964 * 10 8 6 14 14 C 1.46893 * 111.00251 * 283.89637 * 3 2 1 15 15 H 1.08999 * 109.47302 * 193.06891 * 14 3 2 16 16 C 1.53001 * 109.47365 * 313.07001 * 14 3 2 17 17 C 1.50696 * 109.47315 * 73.06901 * 14 3 2 18 18 C 1.38285 * 119.97623 * 224.69350 * 17 14 3 19 19 C 1.38242 * 120.11506 * 180.02562 * 18 17 14 20 20 C 1.38169 * 120.05631 * 359.97438 * 19 18 17 21 21 C 1.38709 * 119.93947 * 359.76453 * 20 19 18 22 22 O 1.35899 * 120.05528 * 180.25984 * 21 20 19 23 23 C 1.42901 * 116.99921 * 0.25625 * 22 21 20 24 24 C 1.38122 * 119.97022 * 44.71147 * 17 14 3 25 25 H 1.08999 * 109.47058 * 69.83899 * 1 2 3 26 26 H 1.09001 * 109.46632 * 189.83295 * 1 2 3 27 27 H 1.08995 * 109.46979 * 309.83317 * 1 2 3 28 28 H 1.08991 * 109.47200 * 240.00126 * 2 1 3 29 29 H 1.08994 * 109.46961 * 119.99645 * 2 1 3 30 30 H 1.09004 * 109.46766 * 47.36034 * 4 3 2 31 31 H 1.08998 * 109.47064 * 167.36032 * 4 3 2 32 32 H 1.08992 * 109.47151 * 303.54080 * 5 4 3 33 33 H 1.09001 * 109.47227 * 63.55013 * 5 4 3 34 34 H 0.96997 * 120.00664 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46731 * 309.33979 * 16 14 3 36 36 H 1.08996 * 109.47473 * 69.33332 * 16 14 3 37 37 H 1.08998 * 109.47522 * 189.34016 * 16 14 3 38 38 H 1.08002 * 119.93949 * 0.03866 * 18 17 14 39 39 H 1.07998 * 119.97280 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.02663 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47141 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47083 * 300.00110 * 23 22 21 43 43 H 1.08996 * 109.47275 * 59.99696 * 23 22 21 44 44 H 1.08004 * 120.02993 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4097 1.4521 0.4704 5 6 3.4498 1.2054 1.9798 6 6 4.8641 1.3601 2.4766 7 1 5.6554 1.6090 1.7849 8 6 5.1480 1.1839 3.8143 9 7 4.1847 0.8804 4.6566 10 14 6.9010 1.3763 4.4303 11 1 7.1359 2.7894 4.8217 12 1 7.1117 0.4952 5.6070 13 1 7.8490 0.9972 3.3519 14 6 1.8845 1.9912 -1.3312 15 1 2.4564 2.9184 -1.3680 16 6 2.4157 1.0220 -2.3892 17 6 0.4320 2.2858 -1.6040 18 6 -0.1184 1.9691 -2.8324 19 6 -1.4503 2.2386 -3.0859 20 6 -2.2353 2.8249 -2.1117 21 6 -1.6870 3.1386 -0.8769 22 8 -2.4583 3.7105 0.0849 23 6 -3.8276 3.9557 -0.2424 24 6 -0.3484 2.8724 -0.6269 25 1 -0.3633 0.3542 -0.9647 26 1 -0.3632 -1.0126 0.1755 27 1 -0.3633 0.6582 0.7891 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.0023 0.6914 -0.0379 31 1 3.8199 2.4381 0.2523 32 1 2.8069 1.9275 2.4831 33 1 3.0984 0.1958 2.1925 34 1 4.3844 0.7561 5.5976 35 1 3.4098 0.6797 -2.1019 36 1 1.7453 0.1661 -2.4673 37 1 2.4705 1.5296 -3.3522 38 1 0.4935 1.5102 -3.5950 39 1 -1.8777 1.9906 -4.0463 40 1 -3.2760 3.0349 -2.3102 41 1 -4.3285 4.4140 0.6104 42 1 -3.8817 4.6274 -1.0991 43 1 -4.3168 3.0133 -0.4881 44 1 0.0819 3.1195 0.3324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052705940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -9.252942 kcal Electronic energy + Delta-G solvation = -22068.595630 eV Core-core repulsion = 18986.409146 eV Total energy + Delta-G solvation = -3082.186485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32209 -38.71269 -36.69109 -33.37166 -31.95000 -30.96462 -30.58468 -29.01900 -27.63384 -27.24687 -24.44259 -23.51230 -22.40632 -21.75223 -20.34480 -19.15377 -17.60392 -16.56401 -16.15242 -15.84940 -15.73176 -15.37154 -14.95936 -14.37331 -14.08601 -13.93408 -13.48752 -13.21609 -12.82612 -12.63392 -12.41465 -12.28603 -12.09840 -11.77155 -11.54108 -11.47403 -11.31808 -11.15916 -11.04769 -10.89057 -10.75208 -10.53656 -10.46908 -10.27251 -9.73937 -9.37229 -9.06675 -8.50990 -8.28653 -8.08542 -7.63742 -5.95180 -3.97547 1.44397 1.57791 3.31010 3.34741 3.40864 3.43675 3.86206 4.40771 4.57448 4.79909 4.85312 5.03779 5.04758 5.14070 5.29744 5.35775 5.38744 5.40641 5.44564 5.51647 5.67232 5.72445 5.79866 5.88312 5.97475 6.04107 6.16793 6.21662 6.27718 6.35086 6.44008 6.49929 6.53910 6.60765 6.76456 6.77898 6.90303 7.04276 7.50306 7.58304 7.64791 7.85490 7.97357 8.15501 8.48039 9.10111 9.65851 11.16092 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.004067 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.402563 B = 6882.972443 C = 7574.019449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.063 3.937 5 C 0.030 3.970 6 C -0.521 4.521 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.113 3.887 15 H 0.091 0.909 16 C -0.182 4.182 17 C -0.020 4.020 18 C -0.163 4.163 19 C -0.088 4.088 20 C -0.218 4.218 21 C 0.120 3.880 22 O -0.316 6.316 23 C 0.030 3.970 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 2.623 -15.685 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.250 5.250 4 C -0.063 4.063 5 C -0.007 4.007 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.004 3.996 15 H 0.109 0.891 16 C -0.241 4.241 17 C -0.021 4.021 18 C -0.181 4.181 19 C -0.106 4.106 20 C -0.237 4.237 21 C 0.075 3.925 22 O -0.229 6.229 23 C -0.066 4.066 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.052 2.909 -14.956 20.727 hybrid contribution 1.147 -0.417 -0.321 1.262 sum -12.906 2.492 -15.277 20.153 Atomic orbital electron populations 1.22020 0.95822 1.00598 1.02205 1.22188 0.95454 0.89510 1.01228 1.62307 1.23259 1.18087 1.21328 1.22365 0.84818 0.99457 0.99693 1.19068 0.96554 0.97308 0.87787 1.21201 0.93957 1.47705 0.93172 0.92870 1.24982 0.96934 0.95347 0.96989 1.69974 1.31713 1.48199 1.03279 0.86624 0.85161 0.77980 0.78386 1.20670 1.21277 1.19971 1.20633 0.91619 0.98164 0.89138 0.89074 1.22493 1.01681 1.00524 0.99402 1.19630 0.95210 0.94736 0.92482 1.21021 0.95351 1.04224 0.97524 1.20787 0.93799 0.97728 0.98265 1.21126 1.00549 1.07711 0.94304 1.19071 0.91337 0.94399 0.87646 1.86115 1.21857 1.76209 1.38756 1.22993 0.80654 1.00638 1.02288 1.20388 0.90285 1.01736 1.01221 0.92657 0.93703 0.91828 0.94608 0.90219 0.96068 0.92198 0.95648 0.96628 0.93049 0.92003 0.91785 0.92358 0.85942 0.86397 0.86168 0.88487 0.93004 0.92923 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.52 37.16 0.32 -2.00 16 2 C 0.04 0.75 5.22 -3.82 -0.02 0.73 16 3 N -0.53 -9.42 3.82 -228.04 -0.87 -10.29 16 4 C 0.06 1.32 4.51 -3.82 -0.02 1.30 16 5 C 0.03 0.79 4.99 -27.88 -0.14 0.65 16 6 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.11 1.68 2.66 -68.87 -0.18 1.50 16 15 H 0.09 1.37 7.70 -51.93 -0.40 0.97 16 16 C -0.18 -2.33 6.76 37.16 0.25 -2.07 16 17 C -0.02 -0.28 3.21 -104.65 -0.34 -0.61 16 18 C -0.16 -1.96 8.24 -39.56 -0.33 -2.29 16 19 C -0.09 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.22 -2.54 9.04 -39.43 -0.36 -2.90 16 21 C 0.12 1.67 6.69 -39.22 -0.26 1.41 16 22 O -0.32 -4.30 10.50 -19.42 -0.20 -4.50 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.12 -1.79 7.35 -39.43 -0.29 -2.08 16 25 H 0.05 0.81 5.09 -51.93 -0.26 0.55 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 28 H 0.04 0.56 5.43 -51.93 -0.28 0.28 16 29 H 0.08 1.55 6.33 -51.93 -0.33 1.22 16 30 H 0.02 0.43 7.31 -51.93 -0.38 0.06 16 31 H 0.06 1.23 7.70 -51.93 -0.40 0.83 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.43 6.68 -51.93 -0.35 0.08 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 0.85 7.09 -51.93 -0.37 0.48 16 36 H 0.06 0.80 6.14 -51.93 -0.32 0.48 16 37 H 0.06 0.63 7.44 -51.93 -0.39 0.24 16 38 H 0.12 1.29 6.11 -52.49 -0.32 0.97 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 43 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 44 H 0.14 2.43 7.86 -52.48 -0.41 2.01 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -30.87 338.64 -8.39 -39.26 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.96 Total: 0.05 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.18 Total: -20.02 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.13 Total: -36.67 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.87 -8.39 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052705940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.006 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds