Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46902 * 109.46497 * 2 1 4 4 C 1.46907 * 110.99721 * 159.94189 * 3 2 1 5 5 C 1.52996 * 109.47031 * 287.36395 * 4 3 2 6 6 C 1.50706 * 109.46645 * 183.54453 * 5 4 3 7 7 H 1.08003 * 120.00476 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99762 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00281 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47457 * 89.99856 * 10 8 6 12 12 H 1.48500 * 109.47189 * 210.00065 * 10 8 6 13 13 H 1.48508 * 109.46995 * 329.99964 * 10 8 6 14 14 C 1.46893 * 111.00251 * 283.89637 * 3 2 1 15 15 H 1.08999 * 109.47302 * 193.06891 * 14 3 2 16 16 C 1.53001 * 109.47365 * 313.07001 * 14 3 2 17 17 C 1.50696 * 109.47315 * 73.06901 * 14 3 2 18 18 C 1.38285 * 119.97623 * 224.69350 * 17 14 3 19 19 C 1.38242 * 120.11506 * 180.02562 * 18 17 14 20 20 C 1.38169 * 120.05631 * 359.97438 * 19 18 17 21 21 C 1.38709 * 119.93947 * 359.76453 * 20 19 18 22 22 O 1.35899 * 120.05528 * 180.25984 * 21 20 19 23 23 C 1.42901 * 116.99921 * 0.25625 * 22 21 20 24 24 C 1.38122 * 119.97022 * 44.71147 * 17 14 3 25 25 H 1.08999 * 109.47058 * 69.83899 * 1 2 3 26 26 H 1.09001 * 109.46632 * 189.83295 * 1 2 3 27 27 H 1.08995 * 109.46979 * 309.83317 * 1 2 3 28 28 H 1.08991 * 109.47200 * 240.00126 * 2 1 3 29 29 H 1.08994 * 109.46961 * 119.99645 * 2 1 3 30 30 H 1.09004 * 109.46766 * 47.36034 * 4 3 2 31 31 H 1.08998 * 109.47064 * 167.36032 * 4 3 2 32 32 H 1.08992 * 109.47151 * 303.54080 * 5 4 3 33 33 H 1.09001 * 109.47227 * 63.55013 * 5 4 3 34 34 H 0.96997 * 120.00664 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46731 * 309.33979 * 16 14 3 36 36 H 1.08996 * 109.47473 * 69.33332 * 16 14 3 37 37 H 1.08998 * 109.47522 * 189.34016 * 16 14 3 38 38 H 1.08002 * 119.93949 * 0.03866 * 18 17 14 39 39 H 1.07998 * 119.97280 * 179.97438 * 19 18 17 40 40 H 1.08000 * 120.02663 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47141 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47083 * 300.00110 * 23 22 21 43 43 H 1.08996 * 109.47275 * 59.99696 * 23 22 21 44 44 H 1.08004 * 120.02993 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4097 1.4521 0.4704 5 6 3.4498 1.2054 1.9798 6 6 4.8641 1.3601 2.4766 7 1 5.6554 1.6090 1.7849 8 6 5.1480 1.1839 3.8143 9 7 4.1847 0.8804 4.6566 10 14 6.9010 1.3763 4.4303 11 1 7.1359 2.7894 4.8217 12 1 7.1117 0.4952 5.6070 13 1 7.8490 0.9972 3.3519 14 6 1.8845 1.9912 -1.3312 15 1 2.4564 2.9184 -1.3680 16 6 2.4157 1.0220 -2.3892 17 6 0.4320 2.2858 -1.6040 18 6 -0.1184 1.9691 -2.8324 19 6 -1.4503 2.2386 -3.0859 20 6 -2.2353 2.8249 -2.1117 21 6 -1.6870 3.1386 -0.8769 22 8 -2.4583 3.7105 0.0849 23 6 -3.8276 3.9557 -0.2424 24 6 -0.3484 2.8724 -0.6269 25 1 -0.3633 0.3542 -0.9647 26 1 -0.3632 -1.0126 0.1755 27 1 -0.3633 0.6582 0.7891 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 4.0023 0.6914 -0.0379 31 1 3.8199 2.4381 0.2523 32 1 2.8069 1.9275 2.4831 33 1 3.0984 0.1958 2.1925 34 1 4.3844 0.7561 5.5976 35 1 3.4098 0.6797 -2.1019 36 1 1.7453 0.1661 -2.4673 37 1 2.4705 1.5296 -3.3522 38 1 0.4935 1.5102 -3.5950 39 1 -1.8777 1.9906 -4.0463 40 1 -3.2760 3.0349 -2.3102 41 1 -4.3285 4.4140 0.6104 42 1 -3.8817 4.6274 -1.0991 43 1 -4.3168 3.0133 -0.4881 44 1 0.0819 3.1195 0.3324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052705940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -27.605494 kcal Electronic energy + Delta-G solvation = -22069.391457 eV Core-core repulsion = 18986.409146 eV Total energy + Delta-G solvation = -3082.982311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35118 -39.86562 -37.83765 -35.38228 -33.37575 -32.41226 -31.69887 -30.38496 -28.94276 -28.11744 -26.20591 -24.84252 -23.55586 -23.10987 -21.79127 -20.46891 -18.70848 -18.50452 -17.12064 -17.04901 -16.71736 -16.58168 -16.49843 -16.07028 -15.52033 -15.13597 -14.60093 -14.41833 -14.17806 -13.99957 -13.72639 -13.60333 -13.37929 -13.11353 -12.93056 -12.85906 -12.68503 -12.55349 -12.34937 -12.26279 -12.18661 -11.87312 -11.76377 -11.57081 -11.54455 -11.24684 -11.14844 -10.52549 -9.55482 -9.09158 -9.01378 -8.18535 -6.30194 0.45951 0.60608 1.40026 1.42049 1.52830 2.40819 2.46762 2.84117 3.14705 3.16707 3.78209 4.00228 4.13426 4.20552 4.21705 4.34339 4.37492 4.39735 4.42002 4.47491 4.52911 4.67217 4.69147 4.72490 4.74224 4.76880 4.87561 4.94222 5.01748 5.11876 5.18452 5.20997 5.23869 5.42720 5.46716 5.48551 5.59258 5.69893 5.77560 5.81558 5.93619 6.16562 6.38748 6.42034 6.58466 6.87738 7.38960 8.93714 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.004067 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.402563 B = 6882.972443 C = 7574.019449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 N -0.541 5.541 4 C 0.083 3.917 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.967 3.033 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.261 1.261 14 C 0.112 3.888 15 H 0.084 0.916 16 C -0.174 4.174 17 C -0.028 4.028 18 C -0.161 4.161 19 C -0.080 4.080 20 C -0.213 4.213 21 C 0.108 3.892 22 O -0.347 6.347 23 C 0.021 3.979 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.026 0.974 31 H 0.060 0.940 32 H -0.013 1.013 33 H -0.010 1.010 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.160 2.472 -18.595 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 N -0.265 5.265 4 C -0.045 4.045 5 C 0.002 3.998 6 C -0.581 4.581 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.185 1.185 14 C 0.004 3.996 15 H 0.102 0.898 16 C -0.233 4.233 17 C -0.029 4.029 18 C -0.179 4.179 19 C -0.097 4.097 20 C -0.232 4.232 21 C 0.063 3.937 22 O -0.261 6.261 23 C -0.074 4.074 24 C -0.163 4.163 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.005 0.995 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.435 2.763 -17.889 23.152 hybrid contribution 1.126 -0.327 0.579 1.308 sum -13.308 2.436 -17.310 21.970 Atomic orbital electron populations 1.21901 0.94470 1.00914 1.02074 1.22150 0.96446 0.88950 1.00510 1.62159 1.21120 1.18915 1.24271 1.21942 0.86986 0.99462 0.96070 1.18885 0.95010 0.94546 0.91360 1.21644 0.94973 1.47666 0.93867 0.92044 1.25979 1.01832 0.94703 0.97208 1.70127 1.34363 1.49128 1.03706 0.85429 0.79298 0.78208 0.77978 1.19826 1.20769 1.18529 1.20678 0.92808 0.98213 0.87928 0.89773 1.22418 1.00908 1.00239 0.99711 1.19532 0.94376 0.95584 0.93369 1.21257 0.96200 1.03672 0.96760 1.21221 0.93182 0.95979 0.99357 1.21447 1.01958 1.06624 0.93137 1.19198 0.90952 0.94824 0.88756 1.86076 1.24018 1.76326 1.39697 1.23293 0.78508 1.01801 1.03752 1.20223 0.91697 1.04032 1.00372 0.91238 0.92215 0.94297 0.92529 0.93542 0.95543 0.92113 0.99455 0.99208 0.92848 0.93087 0.91071 0.89574 0.83694 0.82789 0.83462 0.87068 0.91413 0.91674 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.52 71.98 0.61 -3.66 16 2 C 0.05 1.65 5.22 86.31 0.45 2.10 16 3 N -0.54 -20.19 3.82 -875.39 -3.34 -23.54 16 4 C 0.08 3.59 4.51 86.30 0.39 3.98 16 5 C 0.04 2.19 4.99 29.85 0.15 2.34 16 6 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 7 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 10 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 C 0.11 3.29 2.66 44.17 0.12 3.41 16 15 H 0.08 2.56 7.70 -2.39 -0.02 2.54 16 16 C -0.17 -4.06 6.76 71.98 0.49 -3.57 16 17 C -0.03 -0.76 3.21 -19.88 -0.06 -0.83 16 18 C -0.16 -3.36 8.24 22.28 0.18 -3.18 16 19 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 20 C -0.21 -4.37 9.04 22.37 0.20 -4.17 16 21 C 0.11 2.96 6.69 22.51 0.15 3.11 16 22 O -0.35 -9.56 10.50 -92.41 -0.97 -10.53 16 23 C 0.02 0.33 9.81 113.37 1.11 1.45 16 24 C -0.14 -4.56 7.35 22.37 0.16 -4.39 16 25 H 0.07 1.97 5.09 -2.39 -0.01 1.96 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.40 7.51 -2.39 -0.02 1.38 16 28 H 0.06 1.73 5.43 -2.39 -0.01 1.72 16 29 H 0.05 1.92 6.33 -2.39 -0.02 1.90 16 30 H 0.03 1.11 7.31 -2.38 -0.02 1.09 16 31 H 0.06 2.59 7.70 -2.39 -0.02 2.57 16 32 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H -0.01 -0.62 6.68 -2.39 -0.02 -0.64 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 35 H 0.05 1.31 7.09 -2.39 -0.02 1.29 16 36 H 0.07 1.56 6.14 -2.39 -0.01 1.54 16 37 H 0.09 1.54 7.44 -2.39 -0.02 1.52 16 38 H 0.15 2.37 6.11 -2.91 -0.02 2.35 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.15 2.16 6.30 -2.91 -0.02 2.15 16 41 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 43 H 0.06 0.87 7.67 -2.39 -0.02 0.86 16 44 H 0.10 3.95 7.86 -2.91 -0.02 3.92 16 Total: -1.00 -70.48 338.64 3.85 -66.64 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.97 Total: 14.34 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 4.88 Total: -35.71 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.06 Total: -81.99 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.97 Total: -10.53 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.48 3.85 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052705940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.031 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds