Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 H 1.07996 * 119.99587 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00012 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00204 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99711 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47341 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46996 * 119.99906 * 8 6 4 11 11 H 1.48509 * 109.46812 * 239.99713 * 8 6 4 12 12 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99897 * 179.73022 * 12 2 1 14 14 C 1.50695 * 119.99635 * 0.02562 * 12 2 1 15 15 C 1.52994 * 109.47448 * 299.99856 * 14 12 2 16 16 C 1.52995 * 109.47480 * 300.00402 * 15 14 12 17 17 C 1.53004 * 109.47295 * 299.99891 * 16 15 14 18 18 C 1.53000 * 109.46655 * 300.00087 * 17 16 15 19 19 C 1.53000 * 109.47612 * 59.99763 * 18 17 16 20 20 C 1.53000 * 109.47517 * 180.02562 * 15 14 12 21 21 C 1.53002 * 109.46799 * 59.99765 * 19 18 17 22 22 C 1.52997 * 109.47291 * 299.99798 * 21 19 18 23 23 C 1.53003 * 109.46801 * 60.00643 * 22 21 19 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 28 28 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 29 29 H 0.97000 * 120.00290 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47422 * 60.00295 * 14 12 2 31 31 H 1.09008 * 109.47290 * 60.00053 * 15 14 12 32 32 H 1.09005 * 109.47339 * 59.99734 * 16 15 14 33 33 H 1.09000 * 109.47728 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.47281 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.47101 * 299.98867 * 18 17 16 36 36 H 1.09008 * 109.46849 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47024 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47327 * 300.00424 * 20 15 14 39 39 H 1.09005 * 109.47473 * 180.02562 * 20 15 14 40 40 H 1.09004 * 109.46592 * 180.02562 * 21 19 18 41 41 H 1.08998 * 109.47251 * 60.00153 * 21 19 18 42 42 H 1.08997 * 109.47365 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47453 * 59.99822 * 23 22 21 44 44 H 1.09005 * 109.47378 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2416 6 6 3.1271 2.8773 -1.6727 7 7 3.5552 3.6170 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.8601 2.4168 -4.3673 10 1 2.8009 4.7379 -3.6667 11 1 4.9005 3.5244 -3.6679 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0044 14 6 1.3853 -2.4723 0.0005 15 6 0.5052 -2.5531 1.2494 16 6 1.3842 -2.4718 2.4990 17 6 2.3785 -3.6347 2.4997 18 6 1.6134 -4.9597 2.4996 19 6 0.7343 -5.0410 1.2501 20 6 -0.2594 -3.8783 1.2497 21 6 1.6145 -4.9603 0.0012 22 6 2.3795 -3.6353 0.0012 23 6 3.2586 -3.5540 1.2507 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0321 4.4429 -0.8504 30 1 0.7590 -2.5302 -0.8897 31 1 -0.2031 -1.7245 1.2490 32 1 1.9293 -1.5278 2.4990 33 1 0.7572 -2.5289 3.3887 34 1 3.0044 -3.5770 3.3902 35 1 0.9865 -5.0173 3.3894 36 1 2.3218 -5.7882 2.4997 37 1 0.1896 -5.9851 1.2499 38 1 -0.8857 -3.9367 0.3595 39 1 -0.8868 -3.9357 2.1393 40 1 0.9881 -5.0178 -0.8890 41 1 2.3228 -5.7888 0.0017 42 1 3.0069 -3.5779 -0.8883 43 1 3.9669 -4.3825 1.2512 44 1 3.8040 -2.6102 1.2506 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061037176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = -77.937160 kcal Electronic energy + Delta-G solvation = -23517.247833 eV Core-core repulsion = 20432.082977 eV Total energy + Delta-G solvation = -3085.164856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.75792 -39.86372 -36.70251 -34.92362 -33.58730 -33.45066 -33.27207 -29.86940 -27.82212 -27.03840 -26.66191 -24.80431 -22.51436 -22.34830 -22.24924 -20.16773 -18.70896 -18.41494 -17.51682 -16.97091 -16.44444 -16.09436 -16.03281 -15.27189 -15.01243 -14.75751 -14.27020 -14.23664 -14.14883 -14.11646 -13.79296 -13.66868 -13.46429 -13.33759 -13.25487 -12.86575 -12.74021 -12.48488 -12.25185 -12.11964 -11.78049 -11.74720 -11.69117 -11.63631 -11.56048 -10.90367 -10.67401 -10.52321 -10.47656 -10.06743 -9.35554 -8.24308 -6.39764 1.33683 1.36346 1.48299 1.91565 2.31791 2.48714 3.04583 3.54566 3.59998 3.63988 4.00656 4.18753 4.23487 4.27257 4.29121 4.38735 4.45010 4.45237 4.51129 4.53053 4.63240 4.67548 4.81719 4.85123 4.90420 4.96435 4.99471 5.03107 5.14251 5.15580 5.19513 5.21446 5.26065 5.27631 5.28281 5.41346 5.55153 5.57577 5.65274 5.65569 5.73905 5.86832 6.05053 6.68759 6.84190 7.27275 7.56276 8.82734 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032106 B = 0.004963 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.903138 B = 5640.162169 C = 5719.034909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.502 3.498 13 O -0.592 6.592 14 C -0.086 4.086 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.084 4.084 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.099 4.099 21 C -0.101 4.101 22 C -0.065 4.065 23 C -0.120 4.120 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.020 0.980 28 H -0.007 1.007 29 H 0.267 0.733 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.019 0.981 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 -18.848 5.034 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.292 3.708 13 O -0.473 6.473 14 C -0.107 4.107 15 C -0.103 4.103 16 C -0.147 4.147 17 C -0.103 4.103 18 C -0.138 4.138 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.084 4.084 23 C -0.157 4.157 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.038 0.962 28 H 0.011 0.989 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.209 -18.660 5.080 22.353 hybrid contribution 1.119 1.281 -0.825 1.890 sum -10.090 -17.379 4.255 20.542 Atomic orbital electron populations 1.22044 0.78423 1.03692 1.02191 1.48146 1.08102 1.06337 1.71581 1.18691 0.90869 0.80591 0.95889 1.21724 1.36737 1.06489 0.93003 0.93058 1.25884 0.94857 0.96410 1.02083 1.70063 1.38985 1.14855 1.33042 0.85347 0.77877 0.78455 0.78991 1.19151 1.19181 1.20766 1.21365 0.87776 0.86434 0.75222 1.90557 1.16715 1.87876 1.52177 1.21340 0.97634 0.90312 1.01457 1.21332 0.96373 1.00894 0.91690 1.21530 0.97642 0.96838 0.98646 1.21034 0.96298 0.96173 0.96788 1.21523 0.98441 0.95345 0.98466 1.21097 0.95839 0.99365 0.93889 1.21537 0.96861 0.91696 1.03531 1.21550 0.98554 0.94814 0.98907 1.20776 0.95523 0.94488 0.97580 1.21688 0.97835 1.01305 0.94920 0.91039 0.91756 0.88923 0.96162 0.98898 0.92397 0.87787 0.89005 0.96217 0.89896 0.92223 0.90533 0.91614 0.88672 0.90224 0.89782 0.90775 0.91219 0.93796 0.92267 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 8.80 127.77 1.12 3.57 16 2 N -0.61 -27.00 2.86 -851.14 -2.43 -29.44 16 3 C 0.26 14.69 5.16 85.63 0.44 15.14 16 4 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 8 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 C 0.50 21.85 5.56 87.65 0.49 22.33 16 13 O -0.59 -31.93 13.25 -3.01 -0.04 -31.97 16 14 C -0.09 -2.60 1.48 -11.54 -0.02 -2.61 16 15 C -0.08 -1.95 2.37 -10.80 -0.03 -1.98 16 16 C -0.11 -2.89 4.97 30.59 0.15 -2.74 16 17 C -0.08 -2.13 3.20 -10.79 -0.03 -2.17 16 18 C -0.10 -1.76 5.19 30.59 0.16 -1.60 16 19 C -0.08 -1.31 3.19 -10.81 -0.03 -1.34 16 20 C -0.10 -1.53 5.19 30.58 0.16 -1.37 16 21 C -0.10 -1.97 5.19 30.59 0.16 -1.81 16 22 C -0.06 -1.89 2.36 -10.79 -0.03 -1.91 16 23 C -0.12 -3.79 4.90 30.60 0.15 -3.64 16 24 H 0.07 1.86 6.95 -2.39 -0.02 1.85 16 25 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 26 H 0.09 2.24 6.01 -2.39 -0.01 2.23 16 27 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 28 H -0.01 -0.46 7.43 -2.38 -0.02 -0.48 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.10 2.76 7.40 -2.39 -0.02 2.74 16 31 H 0.09 2.00 4.53 -2.38 -0.01 1.99 16 32 H 0.02 0.68 7.22 -2.38 -0.02 0.66 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.89 5.52 -2.38 -0.01 1.88 16 Total: -1.00 -75.73 319.49 4.20 -71.53 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.97 Total: 10.55 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 3.40 Total: -11.31 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.15 Total: -86.85 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.04 Total: -31.97 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -75.73 4.20 -71.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061037176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.407 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds