Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.50696 * 109.47280 * 120.00287 * 2 1 3 5 5 H 1.08004 * 119.99772 * 120.00406 * 4 2 1 6 6 C 1.37874 * 120.00035 * 299.99860 * 4 2 1 7 7 N 1.31512 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00153 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47347 * 89.99856 * 8 6 4 10 10 H 1.48499 * 109.47052 * 210.00137 * 8 6 4 11 11 H 1.48504 * 109.46892 * 330.00071 * 8 6 4 12 12 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 13 13 C 1.34773 * 119.99968 * 84.99494 * 12 2 1 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 2 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.46708 * 299.72691 * 15 13 12 17 17 C 1.53006 * 109.47002 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.46924 * 59.99949 * 17 16 15 19 19 C 1.53008 * 109.47007 * 60.00054 * 18 17 16 20 20 C 1.52996 * 109.47043 * 300.00103 * 19 18 17 21 21 C 1.52992 * 109.47451 * 299.99708 * 16 15 13 22 22 C 1.53006 * 109.47099 * 299.99561 * 20 19 18 23 23 C 1.52998 * 109.47348 * 179.72561 * 15 13 12 24 24 C 1.52996 * 109.46929 * 179.97438 * 23 15 13 25 25 H 1.09007 * 109.47428 * 59.99827 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 28 28 H 0.97002 * 119.99944 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99507 * 265.00350 * 12 2 1 30 30 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 31 31 H 1.09005 * 109.47120 * 60.00102 * 16 15 13 32 32 H 1.08996 * 109.46952 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47088 * 300.00416 * 17 16 15 34 34 H 1.09002 * 109.47205 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.46766 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47136 * 60.00229 * 19 18 17 37 37 H 1.08998 * 109.46949 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47344 * 180.02562 * 21 16 15 39 39 H 1.09002 * 109.46985 * 60.00287 * 21 16 15 40 40 H 1.08995 * 109.47637 * 300.00608 * 22 20 19 41 41 H 1.09002 * 109.47078 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.46986 * 300.00089 * 23 15 13 43 43 H 1.08994 * 109.47235 * 60.00181 * 24 23 15 44 44 H 1.09005 * 109.46828 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5655 3.7120 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.8538 1.1574 -2.4129 15 6 2.6487 -0.7286 -3.5879 16 6 4.0539 -1.2736 -3.3247 17 6 4.5632 -1.9955 -4.5739 18 6 4.6081 -1.0144 -5.7471 19 6 5.5490 0.1435 -5.4079 20 6 5.0398 0.8652 -4.1587 21 6 4.9947 -0.1159 -2.9850 22 6 3.6345 1.4104 -4.4219 23 6 2.6937 0.2529 -4.7607 24 6 3.2038 -0.4683 -6.0099 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1613 3.4844 29 1 2.2489 -1.6317 -1.1527 30 1 1.9786 -1.5535 -3.8298 31 1 4.0218 -1.9729 -2.4891 32 1 5.5644 -2.3834 -4.3866 33 1 3.8929 -2.8203 -4.8156 34 1 4.9705 -1.5288 -6.6372 35 1 5.5806 0.8426 -6.2435 36 1 6.5501 -0.2448 -5.2205 37 1 5.7098 1.6904 -3.9173 38 1 5.9958 -0.5042 -2.7979 39 1 4.6317 0.3980 -2.0949 40 1 3.6665 2.1092 -5.2576 41 1 3.2719 1.9250 -3.5320 42 1 1.6926 0.6411 -4.9481 43 1 2.5340 -1.2933 -6.2521 44 1 3.2363 0.2311 -6.8454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -75.664236 kcal Electronic energy + Delta-G solvation = -23274.379689 eV Core-core repulsion = 20189.313395 eV Total energy + Delta-G solvation = -3085.066295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54809 -38.26512 -34.79719 -32.96252 -32.47636 -32.27455 -31.97169 -28.86257 -26.15909 -25.68897 -25.21274 -22.20732 -21.35543 -21.25368 -20.65227 -19.25911 -17.80445 -16.58915 -15.52404 -15.14447 -15.01682 -14.93029 -14.32600 -14.24089 -13.71927 -13.22822 -13.19757 -13.04372 -12.98081 -12.52791 -12.38686 -12.25711 -12.24349 -11.62794 -11.19385 -10.99185 -10.98091 -10.80093 -10.76399 -10.73960 -10.68167 -10.49779 -10.25495 -10.21085 -9.74414 -9.52396 -9.49733 -9.01690 -8.64700 -8.51034 -7.80558 -6.10237 -4.19237 3.25256 3.31930 3.33669 3.49568 4.14626 4.39408 4.58155 4.63666 4.76910 5.16964 5.20378 5.22203 5.27156 5.32379 5.38593 5.44970 5.47925 5.49830 5.55884 5.75249 5.80882 5.86420 5.90361 5.99504 6.08627 6.11400 6.14165 6.16169 6.20784 6.23658 6.50386 6.58324 6.63930 6.66942 6.84058 6.89466 7.01498 7.19324 7.53449 7.61890 7.73366 7.95585 8.18508 8.74496 8.82788 9.23004 9.49044 10.95672 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.004913 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.253777 B = 5697.657334 C = 6019.528647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.552 6.552 15 C -0.099 4.099 16 C -0.075 4.075 17 C -0.105 4.105 18 C -0.086 4.086 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.061 4.061 24 C -0.108 4.108 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -4.908 -15.452 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.357 5.357 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.121 4.121 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.080 4.080 24 C -0.146 4.146 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.870 -3.938 -15.302 17.230 hybrid contribution 0.355 -0.992 0.944 1.415 sum 7.225 -4.931 -14.358 16.813 Atomic orbital electron populations 1.22070 0.98654 0.98984 1.00801 1.18689 0.90885 0.93915 0.80186 0.93521 1.21224 1.32260 1.13129 0.90396 0.92188 1.24883 0.94836 0.94967 0.99020 1.69906 1.35943 1.22507 1.23788 0.86472 0.78601 0.79851 0.82306 1.20591 1.21101 1.19880 1.46536 1.65092 1.13427 1.10645 1.20345 0.78141 0.87439 0.84670 1.90563 1.51318 1.16216 1.85071 1.21353 0.97271 0.98827 0.94612 1.20991 0.93484 0.97091 0.97789 1.21535 1.00906 0.97283 0.94561 1.21037 0.95734 0.96029 0.97599 1.21545 0.98054 0.97065 0.97731 1.21047 0.97313 0.97309 0.94676 1.21555 0.98859 0.96023 0.98324 1.21776 0.93685 0.97061 1.03168 1.20732 0.99639 0.94891 0.92703 1.21567 0.95954 0.99570 0.97472 0.96707 0.95602 0.89271 0.92638 0.78139 0.89589 0.90773 0.91926 0.92032 0.91706 0.92378 0.92447 0.91704 0.92199 0.91241 0.92986 0.88543 0.90946 0.92282 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.15 0.34 -3.34 16 2 C 0.27 6.76 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.71 -14.75 4.96 -54.93 -0.27 -15.02 16 13 C 0.51 10.00 5.60 -10.98 -0.06 9.94 16 14 O -0.55 -12.82 13.33 5.56 0.07 -12.75 16 15 C -0.10 -1.47 2.28 -91.77 -0.21 -1.68 16 16 C -0.07 -0.98 2.63 -90.62 -0.24 -1.22 16 17 C -0.11 -1.12 5.19 -26.73 -0.14 -1.26 16 18 C -0.09 -0.89 3.20 -90.64 -0.29 -1.18 16 19 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 20 C -0.09 -1.12 3.20 -90.60 -0.29 -1.41 16 21 C -0.11 -1.56 4.98 -26.71 -0.13 -1.69 16 22 C -0.12 -1.77 4.90 -26.75 -0.13 -1.90 16 23 C -0.06 -0.85 2.36 -90.64 -0.21 -1.07 16 24 C -0.11 -1.20 5.18 -26.76 -0.14 -1.34 16 25 H 0.01 0.35 8.14 -51.92 -0.42 -0.08 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 7.09 7.97 -40.82 -0.33 6.76 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.97 7.58 -51.93 -0.39 0.58 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.21 7.22 -51.93 -0.37 0.83 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.78 5.52 -51.93 -0.29 1.49 16 42 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -29.19 322.96 -9.48 -38.67 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.55 Total: 6.54 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.21 Total: -13.58 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.19 -9.48 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.996 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds