Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99605 * 2 1 4 4 C 1.52996 * 109.47423 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47201 * 67.02830 * 4 3 2 6 6 C 1.46899 * 111.00198 * 289.93974 * 5 4 3 7 7 C 1.50706 * 109.47147 * 299.65750 * 6 5 4 8 8 H 1.08002 * 119.99948 * 354.88161 * 7 6 5 9 9 C 1.37871 * 119.99940 * 174.87963 * 7 6 5 10 10 N 1.31510 * 120.00489 * 0.02562 * 9 7 6 11 11 Si 1.86810 * 119.99975 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46780 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46905 * 120.00057 * 11 9 7 14 14 H 1.48491 * 109.47225 * 240.00578 * 11 9 7 15 15 C 1.46901 * 110.99997 * 53.89358 * 5 4 3 16 16 C 1.52993 * 109.46886 * 66.04406 * 15 5 4 17 17 C 1.53006 * 109.47029 * 180.02562 * 16 15 5 18 18 C 1.50702 * 109.47110 * 180.02562 * 17 16 15 19 19 C 1.38233 * 119.99937 * 90.00523 * 18 17 16 20 20 C 1.38232 * 119.99627 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00676 * 359.96673 * 20 19 18 22 22 C 1.38240 * 119.99255 * 0.28797 * 21 20 19 23 23 C 1.38232 * 120.00281 * 359.50007 * 22 21 20 24 24 H 1.08997 * 109.47025 * 299.99861 * 1 2 3 25 25 H 1.08993 * 109.47022 * 60.00817 * 1 2 3 26 26 H 1.09004 * 109.46463 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47599 * 59.99554 * 3 2 1 28 28 H 1.09003 * 109.47051 * 300.00008 * 3 2 1 29 29 H 1.09001 * 109.47111 * 307.03108 * 4 3 2 30 30 H 1.08999 * 109.47506 * 187.03261 * 4 3 2 31 31 H 1.09007 * 109.47040 * 59.65408 * 6 5 4 32 32 H 1.08995 * 109.47353 * 179.65612 * 6 5 4 33 33 H 0.97000 * 120.00873 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.46852 * 306.04514 * 15 5 4 35 35 H 1.08999 * 109.47032 * 186.04564 * 15 5 4 36 36 H 1.09005 * 109.47287 * 60.00374 * 16 15 5 37 37 H 1.08999 * 109.47414 * 299.99925 * 16 15 5 38 38 H 1.09005 * 109.46872 * 60.00008 * 17 16 15 39 39 H 1.08999 * 109.46869 * 300.00146 * 17 16 15 40 40 H 1.07993 * 120.00206 * 359.96924 * 19 18 17 41 41 H 1.08003 * 119.99886 * 179.97438 * 20 19 18 42 42 H 1.07992 * 120.00567 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.99567 * 179.72717 * 22 21 20 44 44 H 1.08001 * 120.00086 * 180.27590 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9804 0.6076 -1.2761 6 6 3.6021 -0.8085 -1.3736 7 6 4.2475 -1.5793 -0.2509 8 1 4.9409 -1.0859 0.4141 9 6 3.9529 -2.9143 -0.0728 10 7 3.1089 -3.5153 -0.8828 11 14 4.7535 -3.8701 1.3184 12 1 5.6571 -2.9712 2.0805 13 1 3.7025 -4.3989 2.2246 14 1 5.5368 -4.9995 0.7564 15 6 3.4522 1.3731 -2.4132 16 6 4.0662 2.7744 -2.4138 17 6 3.5155 3.5720 -3.5978 18 6 4.1208 4.9521 -3.5988 19 6 5.2978 5.1901 -4.2837 20 6 5.8526 6.4562 -4.2850 21 6 5.2303 7.4844 -3.6021 22 6 4.0562 7.2451 -2.9128 23 6 3.4989 5.9801 -2.9151 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8491 0.5391 0.8195 30 1 3.9781 2.1729 0.1252 31 1 2.5183 -0.9008 -1.3016 32 1 3.9382 -1.2093 -2.3298 33 1 2.9013 -4.4545 -0.7573 34 1 2.3684 1.4513 -2.3264 35 1 3.7065 0.8645 -3.3431 36 1 5.1500 2.6962 -2.5006 37 1 3.8119 3.2830 -1.4839 38 1 2.4318 3.6502 -3.5106 39 1 3.7695 3.0636 -4.5279 40 1 5.7837 4.3870 -4.8176 41 1 6.7724 6.6421 -4.8197 42 1 5.6636 8.4736 -3.6034 43 1 3.5723 8.0474 -2.3756 44 1 2.5792 5.7942 -2.3803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065959205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = -20.148145 kcal Electronic energy + Delta-G solvation = -21577.338507 eV Core-core repulsion = 18494.679571 eV Total energy + Delta-G solvation = -3082.658936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.38460 -38.22359 -36.04624 -34.05098 -32.35117 -30.95503 -30.17145 -28.88732 -26.78218 -25.76541 -24.51315 -22.85859 -22.63403 -21.74700 -20.62739 -19.18150 -16.84198 -16.31420 -16.05343 -15.90241 -15.30252 -15.22908 -14.62227 -14.29925 -14.17481 -13.88053 -13.53900 -13.45233 -13.03582 -12.86485 -12.42602 -11.87990 -11.75427 -11.58336 -11.55275 -11.32582 -11.06238 -11.02014 -10.90018 -10.78285 -10.57659 -10.46097 -10.27886 -9.95849 -9.65906 -8.99586 -8.98843 -8.90596 -8.68420 -8.23614 -6.96602 -5.83451 -3.80789 1.30081 1.32777 3.40560 3.47447 3.52055 3.71844 4.45243 4.57204 4.73719 4.77932 4.90927 5.03667 5.11991 5.22551 5.44071 5.49903 5.53331 5.55594 5.61754 5.65198 5.72151 5.77046 5.84990 5.89713 5.97026 6.00090 6.03202 6.07480 6.18232 6.24378 6.33487 6.40299 6.42711 6.50274 6.64816 6.68718 6.88154 6.95024 7.47057 7.82638 7.92696 7.96932 8.24693 8.40941 8.76749 9.25398 9.80148 11.28097 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.003645 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.766383 B = 7679.963909 C = 8255.963037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.022 3.978 4 C 0.062 3.938 5 N -0.533 5.533 6 C 0.181 3.819 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.050 3.950 16 C -0.107 4.107 17 C -0.083 4.083 18 C -0.071 4.071 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.015 0.985 33 H 0.256 0.744 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 19.161 -4.484 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.056 4.056 4 C -0.067 4.067 5 N -0.256 5.256 6 C 0.056 3.944 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.138 4.138 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.918 18.819 -4.535 19.379 hybrid contribution -0.777 -0.372 0.791 1.169 sum -1.695 18.447 -3.745 18.899 Atomic orbital electron populations 1.22670 0.83786 1.02223 0.98226 1.88482 1.17280 1.25757 1.94577 1.23363 0.97697 0.85989 0.98566 1.22206 0.89297 0.99500 0.95728 1.62310 1.58229 1.05543 0.99512 1.20028 0.97206 0.80473 0.96668 1.21102 1.24515 0.94218 1.13131 0.92455 1.24878 0.95419 0.97732 0.96273 1.69968 1.35124 1.10843 1.37913 0.86581 0.79090 0.79982 0.82519 1.19897 1.21370 1.21351 1.22112 0.96465 0.93366 0.95968 1.21575 1.01239 0.95014 0.96659 1.20657 0.99911 0.91440 1.00068 1.20014 0.95080 0.95661 0.96338 1.21110 0.95700 0.96988 0.99756 1.21141 0.99799 0.93230 0.99575 1.21100 0.96252 0.99023 0.98620 1.21122 0.96259 0.96944 0.99502 1.21075 1.00258 0.92814 0.99625 0.95382 0.95350 0.90004 0.94812 0.94012 0.88835 0.91561 0.94523 0.96658 0.93462 0.95471 0.91701 0.91237 0.92297 0.91326 0.90919 0.85975 0.86283 0.86461 0.86362 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.36 7.58 -35.23 -0.27 -7.63 16 3 C 0.02 0.40 5.69 37.16 0.21 0.62 16 4 C 0.06 1.20 5.36 -3.83 -0.02 1.18 16 5 N -0.53 -11.48 4.75 -236.07 -1.12 -12.60 16 6 C 0.18 4.77 4.30 -4.97 -0.02 4.75 16 7 C -0.49 -14.02 8.21 -34.44 -0.28 -14.30 16 8 H 0.06 1.64 6.99 -52.49 -0.37 1.27 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 11 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 15 C 0.05 0.88 4.60 -3.83 -0.02 0.86 16 16 C -0.11 -1.53 5.12 -26.73 -0.14 -1.66 16 17 C -0.08 -0.99 5.34 -27.88 -0.15 -1.14 16 18 C -0.07 -0.83 5.13 -104.62 -0.54 -1.36 16 19 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 21 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.70 5.79 -51.93 -0.30 0.40 16 29 H 0.09 2.07 6.33 -51.93 -0.33 1.74 16 30 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 31 H 0.04 1.04 5.29 -51.92 -0.27 0.76 16 32 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.03 0.48 5.71 -51.93 -0.30 0.19 16 35 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.83 6.69 -51.93 -0.35 0.49 16 38 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.67 351.35 -9.58 -41.25 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.30 Total: -0.92 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.90 Total: -16.16 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.38 Total: -39.09 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.27 Total: -7.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.67 -9.58 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065959205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.103 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds