Wall clock time and date at job start Mon Mar 30 2020 01:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 C 1.52998 * 109.47276 * 119.99840 * 2 1 3 5 5 O 1.42906 * 109.47197 * 174.99634 * 4 2 1 6 6 C 1.35898 * 116.99809 * 180.02562 * 5 4 2 7 7 C 1.38754 * 120.06002 * 0.02996 * 6 5 4 8 8 C 1.38118 * 119.94786 * 179.97438 * 7 6 5 9 9 C 1.38289 * 120.05311 * 359.73935 * 8 7 6 10 10 C 1.38243 * 120.11127 * 0.51038 * 9 8 7 11 11 C 1.50699 * 119.97277 * 179.76500 * 10 9 8 12 12 N 1.46906 * 109.47093 * 269.72972 * 11 10 9 13 13 C 1.46903 * 110.99973 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46808 * 325.00209 * 13 12 11 15 15 C 1.53000 * 109.47120 * 84.99803 * 13 12 11 16 16 C 1.50694 * 109.47066 * 204.99831 * 13 12 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38166 * 120.05635 * 359.49334 * 10 9 8 25 25 H 1.09007 * 109.47148 * 300.00214 * 1 2 3 26 26 H 1.08997 * 109.47231 * 59.99627 * 1 2 3 27 27 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47268 * 240.00405 * 2 1 3 29 29 H 1.08996 * 109.46981 * 60.00578 * 3 2 1 30 30 H 1.09007 * 109.46728 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47059 * 299.99886 * 3 2 1 32 32 H 1.09001 * 109.46977 * 55.00429 * 4 2 1 33 33 H 1.08996 * 109.47332 * 294.99914 * 4 2 1 34 34 H 1.07999 * 120.02191 * 359.95027 * 7 6 5 35 35 H 1.08005 * 119.97286 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.94502 * 180.27940 * 9 8 7 37 37 H 1.08993 * 109.47230 * 149.72987 * 11 10 9 38 38 H 1.08998 * 109.47345 * 29.72430 * 11 10 9 39 39 H 1.00904 * 110.99866 * 303.94661 * 12 11 10 40 40 H 1.09000 * 109.47156 * 59.99749 * 15 13 12 41 41 H 1.08997 * 109.47359 * 180.02562 * 15 13 12 42 42 H 1.09007 * 109.47356 * 300.00024 * 15 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.02674 * 180.22690 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8238 1.1919 6 6 4.0805 -1.4433 2.2328 7 6 3.3298 -1.9427 3.2875 8 6 3.9585 -2.5723 4.3439 9 6 5.3345 -2.7099 4.3484 10 6 6.0851 -2.2086 3.3014 11 6 7.5849 -2.3556 3.3121 12 7 8.1865 -1.1889 3.9715 13 6 9.6512 -1.2980 4.0011 14 1 9.9351 -2.3426 4.1293 15 6 10.2286 -0.7703 2.6862 16 6 10.1924 -0.4857 5.1492 17 1 9.5160 0.0577 5.7924 18 6 11.5512 -0.4354 5.3780 19 7 12.3749 -1.0967 4.5945 20 14 12.2220 0.5722 6.8008 21 1 12.4996 1.9562 6.3398 22 1 11.2216 0.6070 7.8977 23 1 13.4782 -0.0459 7.2960 24 6 5.4610 -1.5779 2.2423 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 2.2548 -1.8389 3.2824 35 1 3.3745 -2.9616 5.1648 36 1 5.8239 -3.2065 5.1732 37 1 7.9507 -2.4227 2.2876 38 1 7.8574 -3.2605 3.8553 39 1 7.8965 -0.3317 3.5251 40 1 9.9446 0.2742 2.5579 41 1 11.3153 -0.8517 2.7079 42 1 9.8372 -1.3579 1.8557 43 1 13.3308 -1.0609 4.7553 44 1 6.0475 -1.1897 1.4228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068613894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:08 Heat of formation + Delta-G solvation = -32.897805 kcal Electronic energy + Delta-G solvation = -20895.666824 eV Core-core repulsion = 17812.455021 eV Total energy + Delta-G solvation = -3083.211803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13570 -38.02647 -35.96251 -35.29432 -32.81318 -31.03702 -29.98862 -27.99241 -27.46633 -26.72688 -25.15355 -24.24107 -22.33626 -21.16949 -20.23346 -20.12392 -17.77359 -16.46108 -16.20316 -15.93168 -15.78927 -14.79576 -14.67466 -14.38475 -14.16411 -13.96776 -13.47947 -13.28517 -13.05162 -12.63066 -12.58362 -12.34251 -12.28717 -11.68856 -11.60695 -11.43998 -11.39053 -11.20736 -11.08270 -10.88280 -10.77766 -10.75647 -10.57223 -10.42833 -10.12260 -9.86076 -8.98810 -8.66073 -8.33680 -8.02606 -7.20620 -5.95765 -3.98822 1.49538 1.64691 3.12405 3.34915 3.41021 3.46100 3.94116 4.45274 4.47486 4.50489 4.74833 4.91376 4.96503 5.10080 5.11310 5.24200 5.29130 5.34906 5.35756 5.48949 5.52820 5.57165 5.59121 5.64476 5.72559 5.79965 5.94372 5.99847 6.04320 6.18794 6.33155 6.43666 6.60534 6.71573 6.86237 6.91157 6.96999 7.12111 7.38084 7.50941 7.76757 7.91258 8.29398 8.55761 8.63620 9.08542 9.66339 11.11282 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003016 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.722591 B = 9280.374153 C = 9641.346121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.065 3.935 5 O -0.315 6.315 6 C 0.125 3.875 7 C -0.218 4.218 8 C -0.084 4.084 9 C -0.135 4.135 10 C -0.026 4.026 11 C 0.094 3.906 12 N -0.677 5.677 13 C 0.211 3.789 14 H 0.034 0.966 15 C -0.170 4.170 16 C -0.494 4.494 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.288 1.288 24 C -0.148 4.148 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.327 0.673 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.136 -0.751 -7.862 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.011 4.011 5 O -0.229 6.229 6 C 0.081 3.919 7 C -0.237 4.237 8 C -0.102 4.102 9 C -0.154 4.154 10 C -0.027 4.027 11 C -0.035 4.035 12 N -0.307 5.307 13 C 0.103 3.897 14 H 0.052 0.948 15 C -0.229 4.229 16 C -0.532 4.532 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.214 1.214 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.921 -0.965 -7.407 23.159 hybrid contribution 0.473 0.665 -0.065 0.819 sum -21.448 -0.300 -7.473 22.715 Atomic orbital electron populations 1.21782 0.93952 1.02105 1.02462 1.21125 0.95657 0.97106 0.97504 1.21825 1.02213 0.94835 1.01625 1.22848 0.79196 1.00075 0.98970 1.86037 1.21191 1.73862 1.41839 1.18900 0.92152 0.93704 0.87189 1.21107 0.99518 1.06582 0.96504 1.20894 0.94710 0.97470 0.97157 1.20999 0.93294 1.02294 0.98829 1.19866 0.96220 0.94183 0.92438 1.20927 0.88208 0.96895 0.97505 1.60883 1.11891 1.02100 1.55809 1.19205 0.80300 0.97160 0.93007 0.94789 1.22443 1.05541 0.97811 0.97130 1.21161 0.91293 1.28788 1.11996 0.91923 1.24956 0.96995 0.95972 0.96677 1.69887 1.02974 1.42667 1.38288 0.86502 0.78254 0.80049 0.82612 1.20859 1.19873 1.21392 1.20325 0.91195 1.04479 1.00766 0.92342 0.91770 0.92415 0.90124 0.92711 0.91641 0.92574 0.92296 0.92146 0.86176 0.86144 0.85655 0.95218 0.90587 0.85655 0.95309 0.89214 0.97580 0.93094 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.15 0.34 -0.52 16 2 C -0.10 -0.76 3.16 -90.62 -0.29 -1.05 16 3 C -0.15 -1.23 9.09 37.16 0.34 -0.89 16 4 C 0.06 0.61 4.12 37.16 0.15 0.77 16 5 O -0.32 -4.13 9.67 -19.42 -0.19 -4.31 16 6 C 0.13 1.79 6.69 -39.22 -0.26 1.53 16 7 C -0.22 -2.79 9.04 -39.43 -0.36 -3.14 16 8 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 9 C -0.14 -2.03 9.70 -39.56 -0.38 -2.42 16 10 C -0.03 -0.43 5.39 -104.65 -0.56 -1.00 16 11 C 0.09 1.73 5.61 -4.97 -0.03 1.70 16 12 N -0.68 -14.72 6.22 -109.22 -0.68 -15.40 16 13 C 0.21 5.35 2.57 -68.87 -0.18 5.18 16 14 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 15 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 16 C -0.49 -13.84 8.84 -34.44 -0.30 -14.14 16 17 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 18 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 19 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.15 -2.31 9.64 -39.43 -0.38 -2.69 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 33 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.03 0.54 7.38 -51.93 -0.38 0.16 16 38 H 0.08 1.40 8.00 -51.93 -0.42 0.99 16 39 H 0.33 6.91 8.47 -39.29 -0.33 6.58 16 40 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 42 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -29.48 357.27 -9.49 -38.97 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.54 Total: 4.48 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.07 Total: -20.54 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.05 Total: -40.68 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.19 Total: -4.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.48 -9.49 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.069 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds