Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 C 1.52998 * 109.47276 * 119.99840 * 2 1 3 5 5 O 1.42906 * 109.47197 * 174.99634 * 4 2 1 6 6 C 1.35898 * 116.99809 * 180.02562 * 5 4 2 7 7 C 1.38754 * 120.06002 * 0.02996 * 6 5 4 8 8 C 1.38118 * 119.94786 * 179.97438 * 7 6 5 9 9 C 1.38289 * 120.05311 * 359.73935 * 8 7 6 10 10 C 1.38243 * 120.11127 * 0.51038 * 9 8 7 11 11 C 1.50699 * 119.97277 * 179.76500 * 10 9 8 12 12 N 1.46906 * 109.47093 * 269.72972 * 11 10 9 13 13 C 1.46903 * 110.99973 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46808 * 325.00209 * 13 12 11 15 15 C 1.53000 * 109.47120 * 84.99803 * 13 12 11 16 16 C 1.50694 * 109.47066 * 204.99831 * 13 12 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38166 * 120.05635 * 359.49334 * 10 9 8 25 25 H 1.09007 * 109.47148 * 300.00214 * 1 2 3 26 26 H 1.08997 * 109.47231 * 59.99627 * 1 2 3 27 27 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47268 * 240.00405 * 2 1 3 29 29 H 1.08996 * 109.46981 * 60.00578 * 3 2 1 30 30 H 1.09007 * 109.46728 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47059 * 299.99886 * 3 2 1 32 32 H 1.09001 * 109.46977 * 55.00429 * 4 2 1 33 33 H 1.08996 * 109.47332 * 294.99914 * 4 2 1 34 34 H 1.07999 * 120.02191 * 359.95027 * 7 6 5 35 35 H 1.08005 * 119.97286 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.94502 * 180.27940 * 9 8 7 37 37 H 1.08993 * 109.47230 * 149.72987 * 11 10 9 38 38 H 1.08998 * 109.47345 * 29.72430 * 11 10 9 39 39 H 1.00904 * 110.99866 * 303.94661 * 12 11 10 40 40 H 1.09000 * 109.47156 * 59.99749 * 15 13 12 41 41 H 1.08997 * 109.47359 * 180.02562 * 15 13 12 42 42 H 1.09007 * 109.47356 * 300.00024 * 15 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.02674 * 180.22690 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8238 1.1919 6 6 4.0805 -1.4433 2.2328 7 6 3.3298 -1.9427 3.2875 8 6 3.9585 -2.5723 4.3439 9 6 5.3345 -2.7099 4.3484 10 6 6.0851 -2.2086 3.3014 11 6 7.5849 -2.3556 3.3121 12 7 8.1865 -1.1889 3.9715 13 6 9.6512 -1.2980 4.0011 14 1 9.9351 -2.3426 4.1293 15 6 10.2286 -0.7703 2.6862 16 6 10.1924 -0.4857 5.1492 17 1 9.5160 0.0577 5.7924 18 6 11.5512 -0.4354 5.3780 19 7 12.3749 -1.0967 4.5945 20 14 12.2220 0.5722 6.8008 21 1 12.4996 1.9562 6.3398 22 1 11.2216 0.6070 7.8977 23 1 13.4782 -0.0459 7.2960 24 6 5.4610 -1.5779 2.2423 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 2.2548 -1.8389 3.2824 35 1 3.3745 -2.9616 5.1648 36 1 5.8239 -3.2065 5.1732 37 1 7.9507 -2.4227 2.2876 38 1 7.8574 -3.2605 3.8553 39 1 7.8965 -0.3317 3.5251 40 1 9.9446 0.2742 2.5579 41 1 11.3153 -0.8517 2.7079 42 1 9.8372 -1.3579 1.8557 43 1 13.3308 -1.0609 4.7553 44 1 6.0475 -1.1897 1.4228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068613894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -49.072073 kcal Electronic energy + Delta-G solvation = -20896.368193 eV Core-core repulsion = 17812.455021 eV Total energy + Delta-G solvation = -3083.913172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15828 -39.12797 -37.56562 -36.13686 -34.66314 -32.56059 -31.12157 -29.63465 -28.05465 -27.52376 -27.24633 -25.72724 -23.43998 -22.25493 -22.08827 -20.98802 -18.96730 -18.15536 -17.32823 -16.90615 -16.87643 -16.74369 -16.00988 -15.53355 -15.31735 -15.13566 -14.78856 -14.51432 -14.17718 -13.98619 -13.65410 -13.42712 -13.38059 -13.10442 -12.97906 -12.86222 -12.68085 -12.56355 -12.28707 -12.19438 -12.15338 -12.02484 -11.98795 -11.76257 -11.52913 -11.47341 -11.04402 -10.48764 -9.83169 -9.11000 -8.98575 -8.09507 -6.20833 0.36827 0.53670 1.43621 1.43901 1.55487 2.23233 2.44532 2.81022 3.18583 3.70522 3.81460 3.87269 3.90618 4.00051 4.12535 4.14866 4.32365 4.41448 4.49626 4.53487 4.57293 4.66654 4.69473 4.76646 4.77925 4.82032 4.90005 4.98428 5.01301 5.08001 5.11371 5.19853 5.33423 5.38442 5.39050 5.40596 5.51125 5.68382 5.75706 5.80479 5.86180 6.25803 6.51635 6.62052 6.77065 6.92971 7.48898 8.96080 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003016 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.722591 B = 9280.374153 C = 9641.346121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.056 3.944 5 O -0.330 6.330 6 C 0.121 3.879 7 C -0.211 4.211 8 C -0.077 4.077 9 C -0.150 4.150 10 C -0.042 4.042 11 C 0.100 3.900 12 N -0.679 5.679 13 C 0.216 3.784 14 H 0.005 0.995 15 C -0.157 4.157 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.008 3.992 19 N -0.923 5.923 20 Si 0.962 3.038 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.283 1.283 24 C -0.164 4.164 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.330 0.670 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.565 -0.341 -7.425 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.018 4.018 5 O -0.244 6.244 6 C 0.076 3.924 7 C -0.229 4.229 8 C -0.095 4.095 9 C -0.169 4.169 10 C -0.042 4.042 11 C -0.029 4.029 12 N -0.309 5.309 13 C 0.107 3.893 14 H 0.023 0.977 15 C -0.217 4.217 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.195 1.195 23 H -0.208 1.208 24 C -0.184 4.184 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.373 -0.555 -6.982 25.360 hybrid contribution 1.119 0.522 -0.262 1.262 sum -23.255 -0.033 -7.244 24.357 Atomic orbital electron populations 1.21758 0.91997 1.02894 1.03176 1.21157 0.97135 0.96378 0.96587 1.21826 1.00746 0.95538 1.02417 1.23159 0.77309 1.01272 1.00104 1.86037 1.23289 1.73546 1.41539 1.18981 0.91842 0.93621 0.87949 1.21460 1.01008 1.05032 0.95426 1.21233 0.93901 0.96422 0.97963 1.21126 0.94518 1.02731 0.98494 1.19629 0.94701 0.96123 0.93772 1.20851 0.89975 0.95225 0.96856 1.60746 1.09786 1.03443 1.56915 1.18971 0.82507 0.94959 0.92835 0.97686 1.22255 1.03714 0.98252 0.97463 1.21435 0.91724 1.29320 1.12903 0.92800 1.25734 0.97227 0.96942 0.99105 1.70010 1.03205 1.43523 1.39569 0.85494 0.77558 0.78658 0.79511 1.20126 1.19523 1.20843 1.20315 0.92285 1.05185 1.00597 0.91754 0.90973 0.91599 0.90716 0.92358 0.93895 0.91399 0.90861 0.91304 0.83114 0.82933 0.85703 0.95327 0.91203 0.85319 0.95026 0.91745 0.95653 0.92954 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 2 C -0.09 -1.32 3.16 -10.79 -0.03 -1.36 16 3 C -0.15 -2.28 9.09 71.98 0.65 -1.63 16 4 C 0.06 0.94 4.12 71.98 0.30 1.24 16 5 O -0.33 -8.25 9.67 -92.40 -0.89 -9.14 16 6 C 0.12 3.30 6.69 22.51 0.15 3.45 16 7 C -0.21 -4.78 9.04 22.36 0.20 -4.58 16 8 C -0.08 -1.81 10.04 22.25 0.22 -1.58 16 9 C -0.15 -4.37 9.70 22.28 0.22 -4.16 16 10 C -0.04 -1.37 5.39 -19.88 -0.11 -1.47 16 11 C 0.10 3.77 5.61 85.56 0.48 4.25 16 12 N -0.68 -30.16 6.22 -499.46 -3.11 -33.27 16 13 C 0.22 11.24 2.57 44.17 0.11 11.36 16 14 H 0.01 0.30 7.80 -2.39 -0.02 0.28 16 15 C -0.16 -7.81 8.94 71.98 0.64 -7.17 16 16 C -0.52 -29.35 8.84 25.60 0.23 -29.13 16 17 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 18 C 0.01 0.45 5.30 84.66 0.45 0.90 16 19 N -0.92 -53.99 11.32 21.45 0.24 -53.74 16 20 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 C -0.16 -5.13 9.64 22.37 0.22 -4.92 16 25 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.85 7.82 -2.38 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 34 H 0.15 2.46 6.30 -2.91 -0.02 2.44 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.03 1.07 7.38 -2.39 -0.02 1.06 16 38 H 0.07 2.68 8.00 -2.39 -0.02 2.66 16 39 H 0.33 14.20 8.47 -89.69 -0.76 13.44 16 40 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 41 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 42 H 0.02 1.11 7.45 -2.38 -0.02 1.09 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -63.45 357.27 2.86 -60.59 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.20 Total: 24.24 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.39 Total: -35.41 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.86 Total: -87.01 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.89 Total: -9.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.45 2.86 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.516 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds