Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 2 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50705 * 119.97268 * 180.02562 * 10 9 8 12 12 N 1.46898 * 109.47127 * 269.98074 * 11 10 9 13 13 C 1.46893 * 111.00157 * 180.02562 * 12 11 10 14 14 H 1.08993 * 109.47052 * 34.99459 * 13 12 11 15 15 C 1.53002 * 109.46925 * 274.99902 * 13 12 11 16 16 C 1.50702 * 109.47520 * 155.00165 * 13 12 11 17 17 H 1.08003 * 119.99652 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00037 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00182 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99760 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47185 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47326 * 119.99639 * 20 18 16 23 23 H 1.48506 * 109.46851 * 239.99617 * 20 18 16 24 24 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 25 25 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 27 27 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 29 29 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 30 30 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 31 31 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 36 36 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 37 37 H 1.08999 * 109.46727 * 29.97964 * 11 10 9 38 38 H 1.08992 * 109.46868 * 149.98166 * 11 10 9 39 39 H 1.00903 * 111.00100 * 303.95631 * 12 11 10 40 40 H 1.08998 * 109.47008 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47164 * 300.00063 * 15 13 12 42 42 H 1.09006 * 109.47321 * 60.00065 * 15 13 12 43 43 H 0.96994 * 120.00101 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.02733 * 179.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0804 -1.4431 2.2330 7 6 3.3302 -1.9370 3.2907 8 6 3.9584 -2.5717 4.3444 9 6 5.3348 -2.7041 4.3519 10 6 6.0850 -2.2079 3.3020 11 6 7.5849 -2.3545 3.3131 12 7 8.1861 -1.1871 3.9718 13 6 9.6508 -1.2952 4.0007 14 1 9.9969 -1.7851 3.0906 15 6 10.0775 -2.1192 5.2172 16 6 10.2546 0.0826 4.0904 17 1 9.6142 0.9517 4.1223 18 6 11.6245 0.2337 4.1306 19 7 12.4042 -0.8246 4.0912 20 14 12.3728 1.9417 4.2411 21 1 11.2888 2.9562 4.2704 22 1 13.1840 2.0475 5.4804 23 1 13.2407 2.1792 3.0596 24 6 5.4609 -1.5776 2.2426 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 2.2555 -1.8292 3.2877 35 1 3.3744 -2.9605 5.1655 36 1 5.8246 -3.1964 5.1791 37 1 7.8575 -3.2589 3.8569 38 1 7.9509 -2.4221 2.2887 39 1 7.8958 -0.3303 3.5249 40 1 11.1643 -2.1990 5.2389 41 1 9.7313 -1.6293 6.1274 42 1 9.6408 -3.1158 5.1524 43 1 13.3679 -0.7183 4.1199 44 1 6.0474 -1.1898 1.4230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068613897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = -33.982135 kcal Electronic energy + Delta-G solvation = -20898.344541 eV Core-core repulsion = 17815.085718 eV Total energy + Delta-G solvation = -3083.258823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12751 -38.01264 -35.89222 -35.26088 -32.84238 -31.00963 -29.96451 -28.06910 -27.45639 -26.72096 -25.34346 -24.20323 -22.32209 -21.18069 -20.21341 -19.73687 -17.78863 -16.47460 -16.34516 -15.93252 -15.79874 -14.87131 -14.65048 -14.32608 -14.16235 -13.77679 -13.64281 -13.27325 -13.17460 -12.70505 -12.53569 -12.34482 -12.28285 -11.72919 -11.50934 -11.42915 -11.38985 -11.17370 -11.03863 -10.82673 -10.78389 -10.67606 -10.62181 -10.22908 -10.11478 -9.93775 -8.83824 -8.64373 -8.45681 -8.02229 -7.25821 -6.01598 -4.07796 1.49916 1.64850 3.13434 3.29965 3.37712 3.42503 3.94380 4.42241 4.46397 4.51580 4.76000 4.91786 4.96870 5.10791 5.12134 5.25081 5.29061 5.30313 5.36194 5.49856 5.54014 5.56704 5.60361 5.65859 5.73759 5.80818 5.95720 6.00661 6.06084 6.21384 6.33058 6.44454 6.60137 6.85741 6.93659 6.97498 7.15358 7.24006 7.50424 7.52049 7.79830 7.90791 8.28482 8.39462 8.67489 9.02862 9.58164 11.04830 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003279 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.056452 B = 8537.116807 C = 9586.736833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.065 3.935 5 O -0.315 6.315 6 C 0.126 3.874 7 C -0.218 4.218 8 C -0.085 4.085 9 C -0.136 4.136 10 C -0.026 4.026 11 C 0.094 3.906 12 N -0.682 5.682 13 C 0.210 3.790 14 H 0.002 0.998 15 C -0.125 4.125 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.332 0.668 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.004 0.996 43 H 0.260 0.740 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.123 -1.812 -5.693 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.011 4.011 5 O -0.229 6.229 6 C 0.081 3.919 7 C -0.237 4.237 8 C -0.103 4.103 9 C -0.155 4.155 10 C -0.027 4.027 11 C -0.035 4.035 12 N -0.313 5.313 13 C 0.103 3.897 14 H 0.019 0.981 15 C -0.183 4.183 16 C -0.555 4.555 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.167 4.167 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.150 0.850 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.023 0.977 43 H 0.070 0.930 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.903 -2.029 -5.231 22.610 hybrid contribution 0.482 0.984 -0.637 1.268 sum -21.421 -1.044 -5.868 22.234 Atomic orbital electron populations 1.21782 0.93961 1.02092 1.02457 1.21126 0.95644 0.97119 0.97505 1.21826 1.02250 0.94818 1.01620 1.22850 0.79202 1.00063 0.98975 1.86043 1.21184 1.73848 1.41817 1.18907 0.92161 0.93686 0.87151 1.21108 0.99541 1.06557 0.96502 1.20883 0.94689 0.97501 0.97213 1.20976 0.93286 1.02460 0.98787 1.19870 0.96217 0.94188 0.92427 1.20936 0.88187 0.96980 0.97402 1.60802 1.11980 1.02371 1.56134 1.19142 0.80645 0.95978 0.93928 0.98063 1.21720 1.02854 0.95215 0.98506 1.21304 0.91573 0.92045 1.50624 0.92136 1.24920 0.97149 0.96923 0.95050 1.69905 1.04019 1.28377 1.50626 0.86465 0.79156 0.84381 0.77551 1.19724 1.20973 1.21101 1.20347 0.91197 1.04295 1.00821 0.92355 0.91764 0.92423 0.90113 0.92573 0.92718 0.91608 0.92154 0.92304 0.86173 0.86175 0.85773 0.90679 0.95153 0.85040 0.90078 0.94932 0.97676 0.92985 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.10 -0.78 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -1.26 9.09 37.16 0.34 -0.92 16 4 C 0.06 0.62 4.12 37.16 0.15 0.78 16 5 O -0.31 -4.19 9.67 -19.44 -0.19 -4.37 16 6 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 7 C -0.22 -2.80 9.04 -39.43 -0.36 -3.15 16 8 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 9 C -0.14 -2.04 9.70 -39.56 -0.38 -2.42 16 10 C -0.03 -0.43 5.39 -104.64 -0.56 -1.00 16 11 C 0.09 1.75 5.61 -4.97 -0.03 1.73 16 12 N -0.68 -14.95 6.29 -109.23 -0.69 -15.64 16 13 C 0.21 5.40 2.60 -68.87 -0.18 5.22 16 14 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 15 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 16 C -0.52 -14.38 8.59 -34.44 -0.30 -14.67 16 17 H 0.06 1.67 7.62 -52.48 -0.40 1.27 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.15 -2.33 9.64 -39.43 -0.38 -2.71 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 32 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.12 1.24 6.30 -52.48 -0.33 0.91 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.07 1.39 7.38 -51.93 -0.38 1.00 16 38 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 39 H 0.33 7.27 8.21 -39.29 -0.32 6.94 16 40 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -29.45 356.95 -9.47 -38.92 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.52 Total: 4.13 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.05 Total: -19.87 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.06 Total: -40.65 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.19 Total: -4.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.45 -9.47 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.938 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds