Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47087 * 2 1 4 4 C 1.37102 * 120.00341 * 263.70520 * 3 2 1 5 5 H 1.08003 * 119.99837 * 186.49853 * 4 3 2 6 6 C 1.38947 * 119.99750 * 6.49511 * 4 3 2 7 7 N 1.31414 * 119.99884 * 26.47323 * 6 4 3 8 8 Si 1.86798 * 119.99912 * 206.47500 * 6 4 3 9 9 H 1.48497 * 109.47253 * 90.00075 * 8 6 4 10 10 H 1.48506 * 109.46841 * 210.00036 * 8 6 4 11 11 H 1.48497 * 109.47230 * 329.99583 * 8 6 4 12 12 C 1.34777 * 119.99903 * 83.70326 * 3 2 1 13 13 O 1.21290 * 120.00194 * 4.76012 * 12 3 2 14 14 C 1.50704 * 120.00005 * 184.76028 * 12 3 2 15 15 C 1.53001 * 109.47200 * 167.39663 * 14 12 3 16 16 C 1.52999 * 109.47517 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46771 * 300.00101 * 16 15 14 18 18 C 1.52999 * 109.47217 * 299.99685 * 17 16 15 19 19 C 1.52998 * 109.47047 * 60.00059 * 18 17 16 20 20 C 1.53000 * 109.47393 * 59.99961 * 15 14 12 21 21 C 1.53001 * 109.47170 * 60.00103 * 19 18 17 22 22 C 1.52994 * 109.47182 * 287.39501 * 14 12 3 23 23 C 1.52998 * 109.47187 * 179.97438 * 22 14 12 24 24 H 1.09001 * 109.47336 * 56.13791 * 1 2 3 25 25 H 1.08993 * 109.47300 * 176.14064 * 1 2 3 26 26 H 1.09007 * 109.47123 * 296.14124 * 1 2 3 27 27 H 1.08995 * 109.46707 * 240.00519 * 2 1 3 28 28 H 1.08992 * 109.46814 * 119.99912 * 2 1 3 29 29 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47165 * 47.39776 * 14 12 3 31 31 H 1.09007 * 109.47101 * 299.99941 * 15 14 12 32 32 H 1.08996 * 109.47076 * 59.99386 * 16 15 14 33 33 H 1.08991 * 109.47549 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47260 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46916 * 300.00289 * 18 17 16 36 36 H 1.09000 * 109.47508 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.47385 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47258 * 180.02562 * 20 15 14 39 39 H 1.09007 * 109.47044 * 300.00125 * 20 15 14 40 40 H 1.09000 * 109.46733 * 60.00085 * 21 19 18 41 41 H 1.09001 * 109.47003 * 179.97438 * 21 19 18 42 42 H 1.09000 * 109.47152 * 59.99967 * 22 14 12 43 43 H 1.09000 * 109.47223 * 179.97438 * 23 22 14 44 44 H 1.08995 * 109.47190 * 300.00294 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3696 1.9842 -1.1801 5 1 2.8274 2.9624 -1.1714 6 6 2.1367 1.3368 -2.3873 7 7 1.1678 0.4541 -2.4833 8 14 3.2009 1.7210 -3.8737 9 1 4.3711 0.8070 -3.8942 10 1 2.4052 1.5343 -5.1136 11 1 3.6721 3.1270 -3.7950 12 6 2.1223 2.0592 1.1602 13 8 1.8944 1.4999 2.2120 14 6 2.5216 3.5123 1.1506 15 6 2.2639 4.1212 2.5303 16 6 2.6686 5.5967 2.5205 17 6 4.1557 5.7152 2.1803 18 6 4.9801 4.9672 3.2299 19 6 4.5753 3.4918 3.2399 20 6 3.0878 3.3729 3.5801 21 6 4.8330 2.8829 1.8601 22 6 4.0086 3.6304 0.8108 23 6 4.4139 5.1057 0.8004 24 1 -0.3634 0.5726 -0.8533 25 1 -0.3633 -1.0253 -0.0692 26 1 -0.3634 0.4528 0.9226 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.0055 0.0019 -3.3259 30 1 1.9346 4.0455 0.4028 31 1 1.2044 4.0371 2.7725 32 1 2.0814 6.1295 1.7727 33 1 2.4846 6.0305 3.5032 34 1 4.4442 6.7663 2.1737 35 1 4.7965 5.4010 4.2129 36 1 6.0395 5.0521 2.9879 37 1 5.1624 2.9590 3.9879 38 1 2.9039 3.8064 4.5631 39 1 2.7990 2.3218 3.5870 40 1 5.8924 2.9674 1.6179 41 1 4.5450 1.8317 1.8673 42 1 4.1923 3.1966 -0.1722 43 1 5.4734 5.1898 0.5587 44 1 3.8268 5.6385 0.0524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068916015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = -48.930041 kcal Electronic energy + Delta-G solvation = -24087.582829 eV Core-core repulsion = 21003.675816 eV Total energy + Delta-G solvation = -3083.907013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18220 -38.03178 -35.04361 -32.40100 -32.14823 -31.92525 -31.43291 -29.54364 -25.94232 -25.38279 -24.71642 -22.29974 -21.05905 -20.92901 -20.71612 -19.01309 -17.59077 -16.20771 -15.86901 -14.68044 -14.53485 -14.31669 -14.24068 -13.91690 -13.51316 -13.02511 -12.87942 -12.77081 -12.65066 -12.29356 -12.23858 -12.00388 -11.92403 -11.71633 -11.22351 -11.08194 -10.76705 -10.71841 -10.46288 -10.41426 -10.37482 -10.36912 -10.19731 -9.96197 -9.62552 -9.47979 -9.13308 -9.09351 -8.81161 -7.95051 -7.72051 -6.40538 -3.81026 3.09732 3.21607 3.22068 3.94999 4.07868 4.75749 4.94757 4.96554 5.06550 5.15252 5.56931 5.57742 5.67406 5.71183 5.72779 5.81424 5.83303 5.90035 5.91279 6.09803 6.20151 6.23625 6.29211 6.37441 6.41361 6.43522 6.49475 6.52919 6.56019 6.61997 6.66748 6.78570 6.84152 6.88647 6.98286 7.00788 7.04411 7.06430 7.29182 7.38812 7.48800 7.75006 7.82894 8.46482 9.11090 9.61730 10.03533 10.59703 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.007557 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.179307 B = 3704.047205 C = 4471.656324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 N -0.439 5.439 4 C -0.337 4.337 5 H 0.107 0.893 6 C 0.037 3.963 7 N -0.852 5.852 8 Si 0.908 3.092 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.462 3.538 13 O -0.605 6.605 14 C -0.075 4.075 15 C -0.061 4.061 16 C -0.108 4.108 17 C -0.084 4.084 18 C -0.105 4.105 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.103 4.103 22 C -0.081 4.081 23 C -0.106 4.106 24 H 0.080 0.920 25 H 0.033 0.967 26 H 0.025 0.975 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 7.107 4.967 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 N -0.156 5.156 4 C -0.465 4.465 5 H 0.124 0.876 6 C -0.168 4.168 7 N -0.490 5.490 8 Si 0.734 3.266 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.251 3.749 13 O -0.493 6.493 14 C -0.096 4.096 15 C -0.080 4.080 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.161 4.161 21 C -0.141 4.141 22 C -0.099 4.099 23 C -0.144 4.144 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.005 6.677 5.283 9.877 hybrid contribution 0.397 0.228 -1.034 1.131 sum 5.402 6.905 4.248 9.742 Atomic orbital electron populations 1.21906 0.97064 0.99757 1.00872 1.21226 0.94147 0.83572 1.00295 1.43848 1.54991 1.11257 1.05483 1.19813 1.39116 1.04515 0.83013 0.87598 1.25153 0.95750 0.97064 0.98804 1.70191 1.24950 1.27324 1.26512 0.86229 0.80403 0.79118 0.80809 1.20352 1.21126 1.19398 1.19929 0.83040 0.88283 0.83649 1.90344 1.57807 1.70423 1.30744 1.20936 0.96558 0.94924 0.97219 1.20743 0.99314 0.93145 0.94768 1.21566 0.95502 0.96904 1.00542 1.21037 0.95582 0.98199 0.95447 1.21532 0.98583 0.95998 0.98142 1.21013 0.97272 0.94806 0.96979 1.21962 0.93256 1.04821 0.96095 1.21463 0.98405 0.99943 0.94251 1.21087 0.93776 0.94873 1.00186 1.21555 1.00451 0.96147 0.96224 0.90116 0.94759 0.95576 0.88718 0.94610 0.92230 0.90200 0.91827 0.92473 0.92592 0.92178 0.92771 0.92799 0.92384 0.94078 0.87085 0.93041 0.91666 0.89188 0.92447 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.65 37.16 0.36 -2.86 16 2 C 0.13 3.20 5.29 -4.04 -0.02 3.17 16 3 N -0.44 -10.82 2.64 -114.81 -0.30 -11.12 16 4 C -0.34 -8.24 8.41 -14.93 -0.13 -8.36 16 5 H 0.11 2.46 4.83 -52.48 -0.25 2.21 16 6 C 0.04 0.91 4.89 -17.47 -0.09 0.82 16 7 N -0.85 -21.27 8.78 55.50 0.49 -20.78 16 8 Si 0.91 18.97 29.63 -169.99 -5.04 13.93 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 12 C 0.46 10.84 5.50 -10.98 -0.06 10.78 16 13 O -0.61 -15.26 12.95 5.55 0.07 -15.19 16 14 C -0.08 -1.48 1.43 -91.77 -0.13 -1.61 16 15 C -0.06 -1.08 2.47 -90.62 -0.22 -1.30 16 16 C -0.11 -1.58 5.19 -26.73 -0.14 -1.71 16 17 C -0.08 -1.16 3.20 -90.59 -0.29 -1.45 16 18 C -0.11 -1.43 5.19 -26.73 -0.14 -1.57 16 19 C -0.08 -1.30 3.20 -90.59 -0.29 -1.59 16 20 C -0.12 -2.19 4.91 -26.70 -0.13 -2.32 16 21 C -0.10 -1.79 4.97 -26.76 -0.13 -1.92 16 22 C -0.08 -1.43 2.36 -90.65 -0.21 -1.65 16 23 C -0.11 -1.58 5.19 -26.70 -0.14 -1.72 16 24 H 0.08 2.02 6.63 -51.93 -0.34 1.68 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.40 5.74 -51.93 -0.30 2.10 16 28 H 0.04 0.87 7.55 -51.93 -0.39 0.48 16 29 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.08 1.63 7.53 -51.93 -0.39 1.24 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 2.33 5.09 -51.92 -0.26 2.06 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.31 7.22 -51.93 -0.37 0.93 16 42 H 0.09 1.75 5.70 -51.93 -0.30 1.46 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -25.98 311.62 -9.09 -35.07 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.24 Total: 6.69 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.76 Total: -13.30 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.18 Total: -31.90 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.07 Total: -15.19 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.04 Total: 13.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -25.98 -9.09 -35.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.861 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds