Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47087 * 2 1 4 4 C 1.37102 * 120.00341 * 263.70520 * 3 2 1 5 5 H 1.08003 * 119.99837 * 186.49853 * 4 3 2 6 6 C 1.38947 * 119.99750 * 6.49511 * 4 3 2 7 7 N 1.31414 * 119.99884 * 26.47323 * 6 4 3 8 8 Si 1.86798 * 119.99912 * 206.47500 * 6 4 3 9 9 H 1.48497 * 109.47253 * 90.00075 * 8 6 4 10 10 H 1.48506 * 109.46841 * 210.00036 * 8 6 4 11 11 H 1.48497 * 109.47230 * 329.99583 * 8 6 4 12 12 C 1.34777 * 119.99903 * 83.70326 * 3 2 1 13 13 O 1.21290 * 120.00194 * 4.76012 * 12 3 2 14 14 C 1.50704 * 120.00005 * 184.76028 * 12 3 2 15 15 C 1.53001 * 109.47200 * 167.39663 * 14 12 3 16 16 C 1.52999 * 109.47517 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46771 * 300.00101 * 16 15 14 18 18 C 1.52999 * 109.47217 * 299.99685 * 17 16 15 19 19 C 1.52998 * 109.47047 * 60.00059 * 18 17 16 20 20 C 1.53000 * 109.47393 * 59.99961 * 15 14 12 21 21 C 1.53001 * 109.47170 * 60.00103 * 19 18 17 22 22 C 1.52994 * 109.47182 * 287.39501 * 14 12 3 23 23 C 1.52998 * 109.47187 * 179.97438 * 22 14 12 24 24 H 1.09001 * 109.47336 * 56.13791 * 1 2 3 25 25 H 1.08993 * 109.47300 * 176.14064 * 1 2 3 26 26 H 1.09007 * 109.47123 * 296.14124 * 1 2 3 27 27 H 1.08995 * 109.46707 * 240.00519 * 2 1 3 28 28 H 1.08992 * 109.46814 * 119.99912 * 2 1 3 29 29 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47165 * 47.39776 * 14 12 3 31 31 H 1.09007 * 109.47101 * 299.99941 * 15 14 12 32 32 H 1.08996 * 109.47076 * 59.99386 * 16 15 14 33 33 H 1.08991 * 109.47549 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47260 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46916 * 300.00289 * 18 17 16 36 36 H 1.09000 * 109.47508 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.47385 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47258 * 180.02562 * 20 15 14 39 39 H 1.09007 * 109.47044 * 300.00125 * 20 15 14 40 40 H 1.09000 * 109.46733 * 60.00085 * 21 19 18 41 41 H 1.09001 * 109.47003 * 179.97438 * 21 19 18 42 42 H 1.09000 * 109.47152 * 59.99967 * 22 14 12 43 43 H 1.09000 * 109.47223 * 179.97438 * 23 22 14 44 44 H 1.08995 * 109.47190 * 300.00294 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3696 1.9842 -1.1801 5 1 2.8274 2.9624 -1.1714 6 6 2.1367 1.3368 -2.3873 7 7 1.1678 0.4541 -2.4833 8 14 3.2009 1.7210 -3.8737 9 1 4.3711 0.8070 -3.8942 10 1 2.4052 1.5343 -5.1136 11 1 3.6721 3.1270 -3.7950 12 6 2.1223 2.0592 1.1602 13 8 1.8944 1.4999 2.2120 14 6 2.5216 3.5123 1.1506 15 6 2.2639 4.1212 2.5303 16 6 2.6686 5.5967 2.5205 17 6 4.1557 5.7152 2.1803 18 6 4.9801 4.9672 3.2299 19 6 4.5753 3.4918 3.2399 20 6 3.0878 3.3729 3.5801 21 6 4.8330 2.8829 1.8601 22 6 4.0086 3.6304 0.8108 23 6 4.4139 5.1057 0.8004 24 1 -0.3634 0.5726 -0.8533 25 1 -0.3633 -1.0253 -0.0692 26 1 -0.3634 0.4528 0.9226 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.0055 0.0019 -3.3259 30 1 1.9346 4.0455 0.4028 31 1 1.2044 4.0371 2.7725 32 1 2.0814 6.1295 1.7727 33 1 2.4846 6.0305 3.5032 34 1 4.4442 6.7663 2.1737 35 1 4.7965 5.4010 4.2129 36 1 6.0395 5.0521 2.9879 37 1 5.1624 2.9590 3.9879 38 1 2.9039 3.8064 4.5631 39 1 2.7990 2.3218 3.5870 40 1 5.8924 2.9674 1.6179 41 1 4.5450 1.8317 1.8673 42 1 4.1923 3.1966 -0.1722 43 1 5.4734 5.1898 0.5587 44 1 3.8268 5.6385 0.0524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068916015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = -60.460568 kcal Electronic energy + Delta-G solvation = -24088.082830 eV Core-core repulsion = 21003.675816 eV Total energy + Delta-G solvation = -3084.407014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.58237 -39.80576 -36.93601 -33.87351 -33.49481 -33.40591 -33.09312 -31.38073 -27.41596 -26.74108 -26.48622 -24.04983 -22.44453 -22.22801 -22.12831 -20.84233 -19.14999 -17.86627 -17.63779 -16.24475 -16.21518 -15.94738 -15.82850 -15.23818 -14.92499 -14.53139 -14.46421 -14.21402 -14.05180 -14.02144 -13.68605 -13.53681 -13.31084 -13.23024 -12.98848 -12.84436 -12.57494 -12.18969 -12.08525 -11.93998 -11.70367 -11.66804 -11.61691 -11.58201 -11.36186 -10.90700 -10.73891 -10.44104 -10.38464 -9.78139 -9.57874 -8.27581 -5.73812 1.41783 1.49561 1.58282 2.12091 2.31847 3.05170 3.15344 3.71196 3.73221 3.81687 4.26951 4.32174 4.34305 4.42054 4.43952 4.48376 4.50794 4.59511 4.60823 4.61318 4.76435 4.84285 4.88521 4.90421 4.96689 5.01964 5.06078 5.12754 5.20833 5.24757 5.25202 5.26325 5.29181 5.31835 5.41947 5.47915 5.53595 5.65168 5.70487 5.71441 5.79197 5.81855 6.02401 6.55284 7.21171 7.72574 8.15052 8.73593 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.007557 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.179307 B = 3704.047205 C = 4471.656324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.132 3.868 3 N -0.453 5.453 4 C -0.354 4.354 5 H 0.115 0.885 6 C -0.003 4.003 7 N -0.876 5.876 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.257 1.257 12 C 0.451 3.549 13 O -0.630 6.630 14 C -0.070 4.070 15 C -0.062 4.062 16 C -0.102 4.102 17 C -0.081 4.081 18 C -0.099 4.099 19 C -0.081 4.081 20 C -0.122 4.122 21 C -0.101 4.101 22 C -0.078 4.078 23 C -0.103 4.103 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.269 0.731 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 9.786 4.993 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 N -0.170 5.170 4 C -0.480 4.480 5 H 0.132 0.868 6 C -0.205 4.205 7 N -0.514 5.514 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.181 1.181 12 C 0.242 3.758 13 O -0.519 6.519 14 C -0.091 4.091 15 C -0.081 4.081 16 C -0.140 4.140 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.140 4.140 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.894 9.367 5.312 12.787 hybrid contribution -0.263 -0.718 -0.999 1.258 sum 6.632 8.649 4.313 11.721 Atomic orbital electron populations 1.21726 0.96255 1.00632 0.99329 1.21148 0.94762 0.84057 0.99179 1.44082 1.55428 1.11310 1.06206 1.20117 1.39602 1.05204 0.83116 0.86765 1.25941 0.96370 0.97053 1.01167 1.70269 1.25792 1.28149 1.27237 0.85213 0.78353 0.79358 0.77257 1.20528 1.21191 1.18122 1.20729 0.82236 0.89920 0.82931 1.90343 1.58590 1.71485 1.31495 1.20930 0.97995 0.91820 0.98364 1.20763 0.98192 0.95786 0.93374 1.21549 0.96628 0.93858 1.01954 1.21085 0.94529 0.99935 0.94404 1.21514 0.99593 0.93382 0.99144 1.21013 0.95818 0.97205 0.95880 1.21834 0.94832 1.02287 0.97004 1.21436 0.99402 0.97567 0.95490 1.21041 0.92134 0.97519 0.98996 1.21559 1.01679 0.93298 0.97483 0.91822 0.92655 0.96639 0.89627 0.95628 0.92114 0.91329 0.94106 0.91962 0.90666 0.88925 0.90997 0.90865 0.91680 0.92393 0.91242 0.90951 0.95824 0.91386 0.90422 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 9.65 71.98 0.69 -5.16 16 2 C 0.13 6.75 5.29 86.38 0.46 7.20 16 3 N -0.45 -23.28 2.64 -635.54 -1.68 -24.96 16 4 C -0.35 -17.64 8.41 84.04 0.71 -16.93 16 5 H 0.11 5.38 4.83 -2.91 -0.01 5.37 16 6 C 0.00 -0.13 4.89 84.93 0.42 0.29 16 7 N -0.88 -44.53 8.78 21.66 0.19 -44.34 16 8 Si 0.97 38.82 29.63 68.60 2.03 40.86 16 9 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.29 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 12 C 0.45 22.16 5.50 87.66 0.48 22.64 16 13 O -0.63 -33.57 12.95 -3.06 -0.04 -33.61 16 14 C -0.07 -2.80 1.43 -11.54 -0.02 -2.81 16 15 C -0.06 -2.19 2.47 -10.79 -0.03 -2.21 16 16 C -0.10 -2.68 5.19 30.59 0.16 -2.53 16 17 C -0.08 -1.86 3.20 -10.78 -0.03 -1.90 16 18 C -0.10 -2.24 5.19 30.59 0.16 -2.08 16 19 C -0.08 -2.41 3.20 -10.78 -0.03 -2.44 16 20 C -0.12 -4.27 4.91 30.61 0.15 -4.12 16 21 C -0.10 -3.45 4.97 30.58 0.15 -3.30 16 22 C -0.08 -2.72 2.36 -10.81 -0.03 -2.74 16 23 C -0.10 -2.71 5.19 30.61 0.16 -2.55 16 24 H 0.06 3.29 6.63 -2.39 -0.02 3.27 16 25 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 26 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.09 4.51 5.74 -2.39 -0.01 4.50 16 28 H 0.03 1.32 7.55 -2.39 -0.02 1.30 16 29 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.07 2.86 7.53 -2.39 -0.02 2.84 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.07 3.04 5.09 -2.38 -0.01 3.03 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.02 0.97 7.22 -2.39 -0.02 0.95 16 42 H 0.07 2.65 5.70 -2.39 -0.01 2.63 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -58.20 311.62 4.88 -53.32 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.98 Total: 27.37 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.40 Total: -18.63 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.49 Total: -69.30 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.04 Total: -33.61 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.86 kcal Total: -58.20 4.88 -53.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.143 kcal (2) G-P(sol) polarization free energy of solvation -58.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds