Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47006 * 2 1 4 4 C 1.35899 * 116.99930 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05586 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94590 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05438 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.02715 * 179.97438 * 9 8 7 11 11 N 1.46895 * 109.47356 * 260.02460 * 10 9 8 12 12 C 1.46902 * 110.99990 * 293.95773 * 11 10 9 13 13 C 1.46898 * 111.00369 * 170.00073 * 11 10 9 14 14 C 1.52996 * 109.47624 * 190.00157 * 13 11 10 15 15 C 1.52993 * 109.47311 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47113 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00262 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99968 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00517 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99952 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47556 * 59.99954 * 20 18 16 22 22 H 1.48509 * 109.47281 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47179 * 299.99677 * 20 18 16 24 24 H 1.09003 * 109.46669 * 60.00618 * 1 2 3 25 25 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47487 * 299.99875 * 1 2 3 27 27 H 1.08998 * 109.47474 * 239.99645 * 2 1 3 28 28 H 1.08995 * 109.46823 * 119.99665 * 2 1 3 29 29 H 1.08000 * 120.03046 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 31 31 H 1.08004 * 119.94567 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.97538 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47162 * 20.02710 * 10 9 8 34 34 H 1.09005 * 109.46612 * 140.02285 * 10 9 8 35 35 H 1.08997 * 109.47499 * 59.99723 * 12 11 10 36 36 H 1.08999 * 109.47130 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47095 * 299.99668 * 12 11 10 38 38 H 1.09004 * 109.46976 * 310.00311 * 13 11 10 39 39 H 1.09003 * 109.46922 * 69.99828 * 13 11 10 40 40 H 1.09004 * 109.47070 * 300.00096 * 14 13 11 41 41 H 1.09003 * 109.47096 * 59.99331 * 14 13 11 42 42 H 1.09000 * 109.47336 * 299.99617 * 15 14 13 43 43 H 1.08998 * 109.47119 * 60.00288 * 15 14 13 44 44 H 0.96996 * 120.00437 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0961 1.8879 -0.0011 8 6 5.2551 2.9851 -0.0011 9 6 3.8850 2.8066 -0.0011 10 6 2.9687 4.0031 -0.0005 11 7 2.4805 4.2455 1.3636 12 6 1.6193 3.1455 1.8177 13 6 1.7795 5.5334 1.4509 14 6 1.5065 5.8672 2.9188 15 6 0.7769 7.2088 3.0097 16 6 0.5076 7.5372 4.4556 17 1 0.8246 6.8568 5.2320 18 6 -0.1446 8.7058 4.7872 19 7 -0.5321 9.5338 3.8417 20 14 -0.4779 9.1132 6.5795 21 1 0.8091 9.1995 7.3152 22 1 -1.1862 10.4155 6.6678 23 1 -1.3212 8.0488 7.1806 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0005 30 1 6.2281 -0.2459 0.0040 31 1 7.1668 2.0295 -0.0007 32 1 5.6692 3.9825 -0.0012 33 1 3.5143 4.8788 -0.3522 34 1 2.1225 3.8130 -0.6609 35 1 2.1850 2.2138 1.8093 36 1 1.2714 3.3506 2.8301 37 1 0.7620 3.0560 1.1506 38 1 2.3985 6.3147 1.0097 39 1 0.8347 5.4701 0.9109 40 1 0.8875 5.0859 3.3600 41 1 2.4513 5.9303 3.4588 42 1 1.3963 7.9899 2.5687 43 1 -0.1678 7.1460 2.4697 44 1 -0.9906 10.3561 4.0750 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069607415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -21.904778 kcal Electronic energy + Delta-G solvation = -21449.679557 eV Core-core repulsion = 18366.944448 eV Total energy + Delta-G solvation = -3082.735110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54069 -37.75757 -37.09142 -33.76133 -32.37497 -31.73264 -30.69314 -29.61948 -27.03145 -26.65631 -24.41693 -23.82969 -22.00066 -21.62659 -20.61769 -19.75102 -18.21179 -16.58853 -16.25626 -16.18354 -15.77964 -15.07677 -14.76765 -14.59167 -14.30799 -13.90175 -13.71035 -13.48110 -13.18314 -12.81888 -12.66419 -12.21260 -12.17514 -11.89285 -11.78132 -11.62072 -11.34935 -11.24500 -11.15007 -10.82814 -10.73865 -10.63146 -10.47214 -10.39650 -9.51463 -9.28458 -9.03402 -8.91267 -8.27888 -8.26699 -7.84560 -5.93564 -3.95293 1.23962 1.36443 3.06248 3.37831 3.41522 3.44638 3.64113 4.46377 4.55007 4.62107 4.68111 4.70787 4.83824 4.94330 4.99958 5.15918 5.24186 5.35773 5.42002 5.54574 5.56020 5.57317 5.69026 5.74320 5.83881 5.89215 5.97982 6.08452 6.13593 6.23746 6.35931 6.38166 6.45740 6.50673 6.72012 6.81896 6.89036 7.22566 7.30228 7.49340 7.56010 7.76112 7.92336 8.07702 8.51484 9.11874 9.68219 11.17947 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.003322 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.713364 B = 8427.743836 C = 9088.428732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.306 6.306 4 C 0.135 3.865 5 C -0.212 4.212 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.066 4.066 9 C -0.100 4.100 10 C 0.100 3.900 11 N -0.536 5.536 12 C 0.029 3.971 13 C 0.056 3.944 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -20.910 -11.300 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.089 3.911 5 C -0.230 4.230 6 C -0.105 4.105 7 C -0.177 4.177 8 C -0.084 4.084 9 C -0.102 4.102 10 C -0.028 4.028 11 N -0.260 5.260 12 C -0.119 4.119 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.929 -20.567 -11.018 24.982 hybrid contribution -0.825 -0.051 0.451 0.942 sum 8.104 -20.618 -10.567 24.544 Atomic orbital electron populations 1.21778 0.92701 1.02687 1.03806 1.22751 0.95974 0.82433 1.01077 1.86294 1.18866 1.28634 1.88209 1.18782 0.82427 0.93594 0.96290 1.21165 0.94446 0.97726 1.09697 1.20881 0.94239 0.97256 0.98125 1.21033 0.99776 0.92468 1.04434 1.20923 0.91653 0.99279 0.96576 1.19244 0.94228 0.92060 1.04626 1.20879 0.96419 0.94771 0.90707 1.62141 1.39502 1.03189 1.21198 1.22529 0.95239 0.94032 1.00101 1.22301 0.95834 0.89313 0.99642 1.21643 1.00337 0.99721 0.92473 1.19068 0.95024 0.90663 0.96793 1.21231 1.36799 1.04865 0.92677 0.92759 1.25024 0.95871 0.96416 0.97206 1.69955 1.40174 1.11469 1.32115 0.86668 0.78421 0.77458 0.85500 1.20231 1.21346 1.20293 0.91590 0.90571 0.91212 0.92384 0.92134 0.85829 0.86160 0.86036 0.85245 0.90279 0.93989 0.91539 0.91647 0.95670 0.91409 0.95445 0.93486 0.92695 0.96634 0.96873 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.31 -3.69 6.18 -19.42 -0.12 -3.81 16 4 C 0.13 1.67 5.40 -39.22 -0.21 1.46 16 5 C -0.21 -2.22 9.04 -39.43 -0.36 -2.58 16 6 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 7 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 8 C -0.07 -0.77 9.67 -39.61 -0.38 -1.15 16 9 C -0.10 -1.33 5.17 -104.47 -0.54 -1.87 16 10 C 0.10 1.43 4.99 -4.98 -0.02 1.41 16 11 N -0.54 -8.96 4.75 -244.37 -1.16 -10.12 16 12 C 0.03 0.46 7.85 60.07 0.47 0.93 16 13 C 0.06 1.05 4.96 -3.83 -0.02 1.03 16 14 C -0.10 -2.28 5.08 -26.74 -0.14 -2.42 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 16 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 20 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 29 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.13 1.35 8.04 -52.49 -0.42 0.92 16 33 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 34 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 35 H 0.07 1.00 4.99 -51.93 -0.26 0.74 16 36 H 0.06 1.10 6.30 -51.93 -0.33 0.77 16 37 H 0.02 0.39 7.71 -51.93 -0.40 -0.01 16 38 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 39 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.05 1.03 6.47 -51.93 -0.34 0.69 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -32.00 350.44 -9.68 -41.68 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.44 Total: -3.27 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.96 Total: -20.04 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.43 Total: -37.00 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.12 Total: -3.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.00 -9.68 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069607415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.774 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds