Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48498 * 109.47215 * 240.00120 * 3 2 1 5 5 H 1.48506 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47071 * 119.99973 * 3 2 1 7 7 C 1.37880 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47022 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46992 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46928 * 180.02562 * 11 10 9 13 13 C 1.46841 * 111.00037 * 297.49105 * 12 11 10 14 14 C 1.53036 * 109.52229 * 174.16430 * 13 12 11 15 15 C 1.53118 * 109.28246 * 59.17719 * 14 13 12 16 16 C 1.53118 * 109.16078 * 302.34828 * 15 14 13 17 17 C 1.46848 * 110.99578 * 173.28075 * 12 11 10 18 18 H 1.08997 * 109.46446 * 65.83764 * 17 12 11 19 19 C 1.53007 * 109.46407 * 305.85218 * 17 12 11 20 20 N 1.46499 * 109.46910 * 178.39408 * 19 17 12 21 21 C 1.34951 * 126.03215 * 124.63386 * 20 19 17 22 22 C 1.35322 * 107.74194 * 179.74912 * 21 20 19 23 23 C 1.39865 * 107.91900 * 0.38801 * 22 21 20 24 24 N 1.30837 * 108.20358 * 359.60599 * 23 22 21 25 25 H 0.96994 * 119.99611 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47031 * 60.00091 * 9 7 2 27 27 H 1.08994 * 109.47208 * 300.00187 * 9 7 2 28 28 H 1.09000 * 109.46984 * 60.00257 * 10 9 7 29 29 H 1.08994 * 109.47441 * 300.00240 * 10 9 7 30 30 H 1.09000 * 109.47002 * 60.00322 * 11 10 9 31 31 H 1.09001 * 109.46993 * 300.00147 * 11 10 9 32 32 H 1.08999 * 109.46258 * 294.17216 * 13 12 11 33 33 H 1.08994 * 109.46885 * 54.15525 * 13 12 11 34 34 H 1.09003 * 109.50746 * 179.11931 * 14 13 12 35 35 H 1.08996 * 109.50607 * 299.19823 * 14 13 12 36 36 H 1.09007 * 109.52471 * 62.24905 * 15 14 13 37 37 H 1.09001 * 109.52547 * 182.37717 * 15 14 13 38 38 H 1.09001 * 109.50226 * 297.71071 * 16 15 14 39 39 H 1.08998 * 109.50711 * 177.59029 * 16 15 14 40 40 H 1.09002 * 109.46697 * 58.39797 * 19 17 12 41 41 H 1.08996 * 109.46797 * 298.39708 * 19 17 12 42 42 H 1.07996 * 126.12907 * 359.97438 * 21 20 19 43 43 H 1.07994 * 126.03363 * 180.27334 * 22 21 20 44 44 H 1.08000 * 125.90036 * 179.86038 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9872 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.2568 -6.0925 -1.2185 14 6 4.3325 -7.1765 -1.1189 15 6 3.6604 -8.5415 -0.9470 16 6 2.7724 -8.5111 0.3000 17 6 1.7419 -7.3884 0.1592 18 1 1.1175 -7.5763 -0.7142 19 6 0.8651 -7.3413 1.4122 20 7 0.1444 -8.6091 1.5519 21 6 0.1625 -9.4177 2.6321 22 6 -0.6330 -10.4795 2.3658 23 6 -1.1479 -10.3185 1.0754 24 7 -0.6852 -9.1960 0.5878 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 0.8526 -5.0448 -0.8905 31 1 0.8545 -5.0450 0.8895 32 1 2.6252 -6.2865 -2.0854 33 1 3.7326 -5.1179 -1.3265 34 1 4.9327 -7.1784 -2.0287 35 1 4.9735 -6.9754 -0.2606 36 1 3.0501 -8.7600 -1.8235 37 1 4.4234 -9.3116 -0.8333 38 1 3.3884 -8.3313 1.1811 39 1 2.2579 -9.4664 0.4038 40 1 0.1491 -6.5241 1.3240 41 1 1.4926 -7.1815 2.2889 42 1 0.7105 -9.2462 3.5468 43 1 -0.8331 -11.3061 3.0313 44 1 -1.8158 -11.0007 0.5704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071875305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = 65.150211 kcal Electronic energy + Delta-G solvation = -21698.490183 eV Core-core repulsion = 18651.822812 eV Total energy + Delta-G solvation = -3046.667371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24670 -39.26430 -34.82407 -34.06992 -32.94684 -30.94056 -30.54859 -29.88589 -26.88392 -26.22089 -24.20637 -22.59864 -21.78564 -21.17968 -20.45441 -19.89720 -19.48393 -17.33114 -16.43884 -15.93652 -15.15507 -15.01420 -14.58841 -14.46335 -14.42167 -13.87136 -13.83165 -13.55520 -13.14604 -13.08779 -12.88859 -12.30474 -12.21249 -12.05336 -11.67033 -11.42401 -11.14193 -10.88750 -10.86532 -10.68806 -10.64245 -10.57596 -10.34670 -10.26807 -9.60601 -9.42697 -9.33015 -9.06743 -8.63663 -8.33969 -8.14281 -5.99334 -4.01661 1.85768 2.43498 2.78782 3.33617 3.37953 3.40415 3.97749 4.42766 4.48337 4.63784 4.74844 4.80474 4.87129 5.04210 5.16410 5.18574 5.33153 5.36384 5.48069 5.52564 5.64346 5.66058 5.67045 5.74156 5.80515 5.86866 5.89325 5.92214 6.02707 6.07039 6.17570 6.27983 6.33839 6.57778 6.67666 6.72570 6.95153 7.08738 7.29843 7.33831 7.66312 7.67792 7.82403 8.00676 8.43660 9.05310 9.62320 11.12053 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003667 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.518804 B = 7634.480549 C = 8662.203396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.048 3.952 12 N -0.531 5.531 13 C 0.054 3.946 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.107 4.107 17 C 0.077 3.923 18 H 0.053 0.947 19 C 0.132 3.868 20 N -0.361 5.361 21 C 0.055 3.945 22 C -0.281 4.281 23 C 0.038 3.962 24 N -0.293 5.293 25 H 0.261 0.739 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.172 0.828 43 H 0.144 0.856 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -21.506 2.856 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.079 4.079 12 N -0.257 5.257 13 C -0.073 4.073 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.145 4.145 17 C -0.033 4.033 18 H 0.071 0.929 19 C 0.011 3.989 20 N -0.143 5.143 21 C -0.092 4.092 22 C -0.310 4.310 23 C -0.148 4.148 24 N -0.115 5.115 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.189 0.811 43 H 0.162 0.838 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.856 -20.386 2.237 20.868 hybrid contribution -0.216 0.295 0.077 0.374 sum 3.639 -20.091 2.314 20.549 Atomic orbital electron populations 1.69958 1.06059 1.26683 1.50857 1.25029 0.94841 0.99243 0.95362 0.86660 0.79579 0.83155 0.78618 1.20266 1.21315 1.20223 1.21203 0.92990 0.91033 1.50560 0.92733 1.19066 0.94012 0.91389 0.97087 1.21676 0.99164 0.92556 1.00859 1.22433 0.93991 0.91061 1.00372 1.62019 1.23903 1.01461 1.38287 1.22133 0.94961 1.00156 0.90093 1.21602 0.97746 0.94061 1.02016 1.21544 0.98719 0.97494 0.97843 1.21567 0.96976 0.97098 0.98828 1.21755 0.94108 0.91008 0.96391 0.92926 1.21981 0.94791 0.81626 1.00550 1.48733 1.36078 1.18328 1.11209 1.22588 1.01070 0.92175 0.93348 1.21466 1.07778 1.02732 0.99072 1.23860 1.00414 0.95544 0.94994 1.77387 1.09620 1.10466 1.14007 0.92972 0.96833 0.96660 0.92523 0.93285 0.95101 0.90990 0.95128 0.89399 0.91728 0.91072 0.92449 0.92044 0.91280 0.92089 0.88878 0.87711 0.81117 0.83821 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.13 5.00 -26.73 -0.13 -2.26 16 11 C 0.05 0.82 4.63 -3.82 -0.02 0.80 16 12 N -0.53 -7.68 4.52 -226.69 -1.02 -8.71 16 13 C 0.05 0.75 5.26 -3.84 -0.02 0.73 16 14 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 15 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 16 C -0.11 -1.22 5.22 -26.65 -0.14 -1.36 16 17 C 0.08 1.00 2.01 -67.72 -0.14 0.86 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 19 C 0.13 1.61 5.58 -4.04 -0.02 1.58 16 20 N -0.36 -4.43 2.99 -61.36 -0.18 -4.62 16 21 C 0.06 0.55 11.45 -17.22 -0.20 0.36 16 22 C -0.28 -2.74 10.80 -40.01 -0.43 -3.18 16 23 C 0.04 0.42 12.03 -17.37 -0.21 0.21 16 24 N -0.29 -4.03 12.42 30.62 0.38 -3.65 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.98 6.34 -51.93 -0.33 0.66 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.19 5.79 -51.93 -0.30 0.89 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.29 6.09 -51.93 -0.32 0.97 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 40 H 0.09 1.25 6.09 -51.93 -0.32 0.93 16 41 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -31.47 347.52 -9.59 -41.07 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.54 Total: -1.41 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.18 Total: -18.28 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.09 Total: -43.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.47 -9.59 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071875305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.219 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds