Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48498 * 109.47215 * 240.00120 * 3 2 1 5 5 H 1.48506 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47071 * 119.99973 * 3 2 1 7 7 C 1.37880 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47022 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46992 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46928 * 180.02562 * 11 10 9 13 13 C 1.46841 * 111.00037 * 297.49105 * 12 11 10 14 14 C 1.53036 * 109.52229 * 174.16430 * 13 12 11 15 15 C 1.53118 * 109.28246 * 59.17719 * 14 13 12 16 16 C 1.53118 * 109.16078 * 302.34828 * 15 14 13 17 17 C 1.46848 * 110.99578 * 173.28075 * 12 11 10 18 18 H 1.08997 * 109.46446 * 65.83764 * 17 12 11 19 19 C 1.53007 * 109.46407 * 305.85218 * 17 12 11 20 20 N 1.46499 * 109.46910 * 178.39408 * 19 17 12 21 21 C 1.34951 * 126.03215 * 124.63386 * 20 19 17 22 22 C 1.35322 * 107.74194 * 179.74912 * 21 20 19 23 23 C 1.39865 * 107.91900 * 0.38801 * 22 21 20 24 24 N 1.30837 * 108.20358 * 359.60599 * 23 22 21 25 25 H 0.96994 * 119.99611 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47031 * 60.00091 * 9 7 2 27 27 H 1.08994 * 109.47208 * 300.00187 * 9 7 2 28 28 H 1.09000 * 109.46984 * 60.00257 * 10 9 7 29 29 H 1.08994 * 109.47441 * 300.00240 * 10 9 7 30 30 H 1.09000 * 109.47002 * 60.00322 * 11 10 9 31 31 H 1.09001 * 109.46993 * 300.00147 * 11 10 9 32 32 H 1.08999 * 109.46258 * 294.17216 * 13 12 11 33 33 H 1.08994 * 109.46885 * 54.15525 * 13 12 11 34 34 H 1.09003 * 109.50746 * 179.11931 * 14 13 12 35 35 H 1.08996 * 109.50607 * 299.19823 * 14 13 12 36 36 H 1.09007 * 109.52471 * 62.24905 * 15 14 13 37 37 H 1.09001 * 109.52547 * 182.37717 * 15 14 13 38 38 H 1.09001 * 109.50226 * 297.71071 * 16 15 14 39 39 H 1.08998 * 109.50711 * 177.59029 * 16 15 14 40 40 H 1.09002 * 109.46697 * 58.39797 * 19 17 12 41 41 H 1.08996 * 109.46797 * 298.39708 * 19 17 12 42 42 H 1.07996 * 126.12907 * 359.97438 * 21 20 19 43 43 H 1.07994 * 126.03363 * 180.27334 * 22 21 20 44 44 H 1.08000 * 125.90036 * 179.86038 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9872 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.2568 -6.0925 -1.2185 14 6 4.3325 -7.1765 -1.1189 15 6 3.6604 -8.5415 -0.9470 16 6 2.7724 -8.5111 0.3000 17 6 1.7419 -7.3884 0.1592 18 1 1.1175 -7.5763 -0.7142 19 6 0.8651 -7.3413 1.4122 20 7 0.1444 -8.6091 1.5519 21 6 0.1625 -9.4177 2.6321 22 6 -0.6330 -10.4795 2.3658 23 6 -1.1479 -10.3185 1.0754 24 7 -0.6852 -9.1960 0.5878 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 0.8526 -5.0448 -0.8905 31 1 0.8545 -5.0450 0.8895 32 1 2.6252 -6.2865 -2.0854 33 1 3.7326 -5.1179 -1.3265 34 1 4.9327 -7.1784 -2.0287 35 1 4.9735 -6.9754 -0.2606 36 1 3.0501 -8.7600 -1.8235 37 1 4.4234 -9.3116 -0.8333 38 1 3.3884 -8.3313 1.1811 39 1 2.2579 -9.4664 0.4038 40 1 0.1491 -6.5241 1.3240 41 1 1.4926 -7.1815 2.2889 42 1 0.7105 -9.2462 3.5468 43 1 -0.8331 -11.3061 3.0313 44 1 -1.8158 -11.0007 0.5704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071875305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = 46.739968 kcal Electronic energy + Delta-G solvation = -21699.288511 eV Core-core repulsion = 18651.822812 eV Total energy + Delta-G solvation = -3047.465699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09018 -40.36502 -36.42348 -35.00813 -34.74109 -32.52655 -31.60856 -30.72520 -28.51169 -27.31074 -25.68927 -23.97315 -22.99839 -21.97637 -21.57186 -21.34500 -20.51736 -18.49842 -18.18844 -17.17209 -16.47708 -16.23410 -16.16120 -15.75044 -15.40964 -14.97734 -14.78743 -14.57061 -14.48852 -14.22483 -13.99103 -13.64734 -13.56781 -13.32763 -13.03439 -12.97355 -12.65749 -12.47936 -12.36061 -12.13444 -11.74379 -11.64329 -11.49604 -11.46626 -11.35406 -11.21742 -10.98409 -10.54806 -10.33108 -9.45998 -9.39345 -8.20438 -6.31731 1.04399 1.39769 1.43003 1.50899 1.57688 2.01394 2.40539 2.83382 3.12758 3.47529 3.65110 3.83190 3.95340 4.07634 4.09923 4.12488 4.25785 4.26742 4.37617 4.40066 4.51347 4.60018 4.71244 4.75014 4.76122 4.83519 4.93346 4.94278 4.96939 5.01502 5.10481 5.15330 5.15884 5.20315 5.28515 5.41828 5.51355 5.72423 5.79125 5.84861 5.98747 6.08223 6.19465 6.26126 6.83576 6.85153 7.37659 8.91354 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003667 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.518804 B = 7634.480549 C = 8662.203396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.060 3.940 12 N -0.525 5.525 13 C 0.049 3.951 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.097 4.097 17 C 0.083 3.917 18 H 0.026 0.974 19 C 0.135 3.865 20 N -0.373 5.373 21 C 0.054 3.946 22 C -0.283 4.283 23 C 0.034 3.966 24 N -0.344 5.344 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.007 1.007 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.204 0.796 43 H 0.170 0.830 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 -22.611 3.924 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.067 4.067 12 N -0.250 5.250 13 C -0.079 4.079 14 C -0.146 4.146 15 C -0.154 4.154 16 C -0.135 4.135 17 C -0.026 4.026 18 H 0.044 0.956 19 C 0.013 3.987 20 N -0.156 5.156 21 C -0.092 4.092 22 C -0.313 4.313 23 C -0.152 4.152 24 N -0.166 5.166 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.011 0.989 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.221 0.779 43 H 0.188 0.812 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.737 -21.519 3.306 22.515 hybrid contribution -0.866 0.567 -0.254 1.066 sum 4.871 -20.952 3.052 21.726 Atomic orbital electron populations 1.70101 1.07870 1.27819 1.51712 1.26005 0.95758 1.03439 0.94715 0.85494 0.78261 0.77998 0.79267 1.19184 1.20920 1.18968 1.21659 0.93576 0.92275 1.50512 0.92060 1.18966 0.94413 0.93235 0.94574 1.21402 0.97905 0.92185 1.01025 1.22157 0.93878 0.90797 0.99887 1.62017 1.23027 1.01333 1.38620 1.22223 0.95416 1.00826 0.89404 1.21565 0.96853 0.93152 1.03064 1.21549 0.98965 0.97757 0.97125 1.21487 0.96460 0.95896 0.99627 1.21722 0.94379 0.90606 0.95905 0.95569 1.21884 0.94376 0.81549 1.00875 1.48712 1.36499 1.18545 1.11821 1.23223 1.00833 0.91550 0.93587 1.21843 1.07199 1.03386 0.98826 1.24398 1.00023 0.94980 0.95764 1.77348 1.11420 1.12095 1.15778 0.92808 0.99665 0.98905 0.92203 0.93044 0.96770 0.90597 0.96108 0.90435 0.90107 0.90614 0.93279 0.89891 0.90226 0.92335 0.90965 0.85623 0.77942 0.81239 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.63 5.00 30.60 0.15 -3.47 16 11 C 0.06 2.13 4.63 86.31 0.40 2.52 16 12 N -0.52 -15.11 4.52 -871.10 -3.94 -19.04 16 13 C 0.05 1.33 5.26 86.33 0.45 1.78 16 14 C -0.11 -2.24 6.09 30.65 0.19 -2.05 16 15 C -0.12 -2.27 6.00 30.67 0.18 -2.08 16 16 C -0.10 -2.04 5.22 30.65 0.16 -1.88 16 17 C 0.08 2.15 2.01 44.94 0.09 2.24 16 18 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 19 C 0.13 3.25 5.58 86.38 0.48 3.73 16 20 N -0.37 -8.92 2.99 -348.05 -1.04 -9.96 16 21 C 0.05 0.97 11.45 83.54 0.96 1.93 16 22 C -0.28 -4.92 10.80 21.99 0.24 -4.68 16 23 C 0.03 0.71 12.03 85.24 1.02 1.73 16 24 N -0.34 -9.51 12.42 -57.03 -0.71 -10.21 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 2.10 6.34 -2.39 -0.02 2.08 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 2.61 5.79 -2.39 -0.01 2.60 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 2.26 6.09 -2.39 -0.01 2.24 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.29 7.68 -2.39 -0.02 1.28 16 40 H 0.07 2.01 6.09 -2.39 -0.01 2.00 16 41 H 0.13 2.44 8.07 -2.39 -0.02 2.42 16 42 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -69.21 347.52 2.75 -66.46 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.95 Total: 12.95 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 5.17 Total: -29.33 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -5.40 Total: -96.67 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.21 2.75 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071875305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.202 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds