Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47338 * 240.00605 * 3 2 1 5 5 H 1.48503 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46827 * 120.00275 * 3 2 1 7 7 C 1.37872 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00508 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47039 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46964 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99967 * 51.72699 * 12 11 10 14 14 C 1.53034 * 109.52272 * 185.84037 * 13 12 11 15 15 C 1.53118 * 109.27490 * 300.81341 * 14 13 12 16 16 C 1.53117 * 109.15964 * 57.65980 * 15 14 13 17 17 C 1.46849 * 110.99606 * 175.93250 * 12 11 10 18 18 H 1.08999 * 109.45282 * 294.17180 * 17 12 11 19 19 C 1.52998 * 109.46324 * 54.14677 * 17 12 11 20 20 N 1.46505 * 109.46937 * 60.41442 * 19 17 12 21 21 C 1.34951 * 126.03690 * 124.00711 * 20 19 17 22 22 C 1.35312 * 107.74220 * 179.97438 * 21 20 19 23 23 C 1.39867 * 107.92313 * 359.97438 * 22 21 20 24 24 N 1.30839 * 108.20138 * 359.74230 * 23 22 21 25 25 H 0.96997 * 119.99783 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46577 * 60.00391 * 9 7 2 27 27 H 1.08995 * 109.47064 * 300.00735 * 9 7 2 28 28 H 1.08995 * 109.47149 * 59.99914 * 10 9 7 29 29 H 1.09005 * 109.46964 * 299.99931 * 10 9 7 30 30 H 1.08997 * 109.46761 * 60.00207 * 11 10 9 31 31 H 1.08997 * 109.46923 * 299.99902 * 11 10 9 32 32 H 1.08994 * 109.46409 * 65.81453 * 13 12 11 33 33 H 1.09002 * 109.44965 * 305.84427 * 13 12 11 34 34 H 1.09006 * 109.50240 * 180.88153 * 14 13 12 35 35 H 1.08997 * 109.50726 * 60.75822 * 14 13 12 36 36 H 1.09000 * 109.52931 * 297.75113 * 15 14 13 37 37 H 1.09009 * 109.52197 * 177.56129 * 15 14 13 38 38 H 1.09009 * 109.50589 * 182.40086 * 16 15 14 39 39 H 1.09002 * 109.53789 * 62.30162 * 16 15 14 40 40 H 1.09001 * 109.46925 * 180.41345 * 19 17 12 41 41 H 1.09000 * 109.47407 * 300.41446 * 19 17 12 42 42 H 1.08003 * 126.12323 * 359.97438 * 21 20 19 43 43 H 1.08005 * 126.03550 * 180.02562 * 22 21 20 44 44 H 1.07999 * 125.89570 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4350 -6.1036 -0.0005 13 6 3.4232 -5.9517 1.0750 14 6 4.4830 -7.0491 0.9546 15 6 3.8052 -8.4189 1.0487 16 6 2.7471 -8.5327 -0.0522 17 6 1.7376 -7.3923 0.0973 18 1 1.2468 -7.4666 1.0677 19 6 0.6894 -7.4903 -1.0129 20 7 1.3500 -7.3995 -2.3175 21 6 1.2651 -8.3043 -3.3150 22 6 2.0163 -7.8531 -4.3461 23 6 2.5791 -6.6304 -3.9658 24 7 2.1757 -6.3547 -2.7521 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 0.8534 -5.0450 -0.8897 31 1 0.8540 -5.0445 0.8903 32 1 2.9243 -6.0329 2.0407 33 1 3.9007 -4.9752 0.9939 34 1 5.2076 -6.9455 1.7623 35 1 4.9917 -6.9599 -0.0052 36 1 3.3292 -8.5237 2.0236 37 1 4.5506 -9.2038 0.9200 38 1 2.2315 -9.4890 0.0360 39 1 3.2280 -8.4673 -1.0282 40 1 0.1667 -8.4436 -0.9359 41 1 -0.0259 -6.6743 -0.9104 42 1 0.6990 -9.2239 -3.2941 43 1 2.1559 -8.3491 -5.2953 44 1 3.2302 -6.0175 -4.5714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071875307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = 73.221072 kcal Electronic energy + Delta-G solvation = -22368.202166 eV Core-core repulsion = 19321.884774 eV Total energy + Delta-G solvation = -3046.317392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96295 -39.07900 -34.71408 -33.91976 -32.82136 -30.71590 -30.36390 -29.55030 -26.83439 -26.06740 -24.18862 -22.45483 -21.69788 -20.80953 -20.37870 -19.73559 -19.29565 -16.97864 -16.25094 -15.70982 -15.14580 -14.97861 -14.57689 -14.40452 -14.25328 -13.71977 -13.53856 -13.25778 -13.02099 -12.99912 -12.59627 -12.14440 -12.03323 -11.99945 -11.53070 -11.37601 -11.12530 -10.81971 -10.79095 -10.62145 -10.51256 -10.23577 -10.12085 -10.10149 -9.45609 -9.23295 -9.08077 -8.96447 -8.33101 -8.26726 -7.81601 -5.92716 -3.94123 2.20235 2.75136 3.15941 3.38237 3.41883 3.45057 4.08038 4.51749 4.52481 4.67366 4.88565 4.91174 4.97360 5.15622 5.19658 5.31422 5.37979 5.43066 5.51983 5.61925 5.71528 5.78171 5.81671 5.85929 5.90662 5.97270 5.99555 6.11800 6.15595 6.21781 6.29180 6.42767 6.46313 6.86696 6.89257 6.97000 7.21487 7.25979 7.52670 7.57237 7.76964 7.94379 8.08177 8.08664 8.52601 9.12875 9.69272 11.18854 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.004575 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.225674 B = 6118.877958 C = 6934.125229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.104 4.104 11 C 0.063 3.937 12 N -0.509 5.509 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.108 4.108 17 C 0.072 3.928 18 H 0.051 0.949 19 C 0.134 3.866 20 N -0.357 5.357 21 C 0.034 3.966 22 C -0.277 4.277 23 C 0.019 3.981 24 N -0.228 5.228 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -21.333 -2.092 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.142 4.142 11 C -0.064 4.064 12 N -0.234 5.234 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.146 4.146 17 C -0.038 4.038 18 H 0.068 0.932 19 C 0.012 3.988 20 N -0.140 5.140 21 C -0.111 4.111 22 C -0.307 4.307 23 C -0.168 4.168 24 N -0.049 5.049 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.180 0.820 43 H 0.156 0.844 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.627 -20.384 -1.421 20.753 hybrid contribution -0.157 0.266 0.050 0.313 sum 3.470 -20.118 -1.371 20.461 Atomic orbital electron populations 1.69961 1.06048 1.26527 1.51221 1.25016 0.94819 0.99158 0.95483 0.86678 0.79589 0.83253 0.78597 1.20223 1.21359 1.20328 1.21222 0.92968 0.91095 1.50088 0.92816 1.19039 0.94030 0.91452 0.96816 1.21675 0.99143 0.92760 1.00615 1.22242 0.94010 0.90846 0.99313 1.61969 1.15926 1.00254 1.45248 1.22175 0.93778 0.99917 0.91783 1.21576 0.97623 0.94023 1.02079 1.21539 0.97970 0.97667 0.98318 1.21573 0.96667 0.96155 1.00210 1.21893 0.93946 0.92169 0.95763 0.93182 1.21883 0.94358 1.03159 0.79399 1.48563 1.37638 1.15840 1.11972 1.22423 1.02406 0.96614 0.89695 1.21393 1.07990 1.00057 1.01265 1.23965 1.01505 0.97028 0.94264 1.77905 1.07325 1.07844 1.11779 0.93088 0.96722 0.97143 0.93685 0.92254 0.90862 0.96426 0.95700 0.89391 0.92042 0.91248 0.92545 0.92251 0.92352 0.90968 0.88807 0.89294 0.81964 0.84429 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.65 4.97 -27.89 -0.14 0.51 16 10 C -0.10 -2.28 4.65 -26.73 -0.12 -2.40 16 11 C 0.06 1.14 4.17 -3.82 -0.02 1.13 16 12 N -0.51 -7.83 3.34 -226.69 -0.76 -8.59 16 13 C 0.05 0.75 5.03 -3.84 -0.02 0.73 16 14 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 15 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 16 C -0.11 -1.18 5.22 -26.65 -0.14 -1.32 16 17 C 0.07 0.89 2.20 -67.72 -0.15 0.74 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 C 0.13 1.53 5.63 -4.04 -0.02 1.51 16 20 N -0.36 -4.73 2.87 -61.36 -0.18 -4.91 16 21 C 0.03 0.38 11.45 -17.22 -0.20 0.18 16 22 C -0.28 -3.27 10.80 -40.01 -0.43 -3.70 16 23 C 0.02 0.27 12.03 -17.37 -0.21 0.06 16 24 N -0.23 -3.71 10.57 30.62 0.32 -3.39 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.41 6.01 -51.93 -0.31 1.10 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 1.43 5.84 -51.93 -0.30 1.13 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16 40 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.09 1.12 6.39 -51.93 -0.33 0.79 16 42 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -32.71 343.61 -9.44 -42.15 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.54 Total: -1.31 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.18 Total: -19.40 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.13 Total: -43.87 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.71 -9.44 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071875307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.374 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds