Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30838 * 125.89735 * 2 1 4 4 N 1.40087 * 108.20641 * 180.02562 * 3 2 1 5 5 C 1.46492 * 126.03877 * 179.97438 * 4 3 2 6 6 C 1.34953 * 107.92035 * 359.75128 * 4 3 2 7 7 C 1.50702 * 126.12417 * 180.23936 * 6 4 3 8 8 C 1.35311 * 107.74750 * 0.39235 * 6 4 3 9 9 C 1.50703 * 126.03687 * 179.87206 * 8 6 4 10 10 H 1.08990 * 110.46538 * 15.67606 * 9 8 6 11 11 C 1.54377 * 110.41126 * 253.25699 * 9 8 6 12 12 C 1.54259 * 105.15337 * 217.41985 * 11 9 8 13 13 C 1.54385 * 105.05805 * 359.95400 * 12 11 9 14 14 N 1.48556 * 104.59443 * 23.84840 * 13 12 11 15 15 C 1.46897 * 110.99964 * 200.95848 * 14 13 12 16 16 C 1.53005 * 109.47184 * 176.59296 * 15 14 13 17 17 C 1.50697 * 109.47119 * 173.91107 * 16 15 14 18 18 H 1.07996 * 120.00298 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99993 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46857 * 90.00003 * 21 19 17 23 23 H 1.48495 * 109.47184 * 210.00055 * 21 19 17 24 24 H 1.48493 * 109.46834 * 330.00255 * 21 19 17 25 25 H 1.09006 * 109.47269 * 269.98426 * 1 2 3 26 26 H 1.09002 * 109.47117 * 29.98242 * 1 2 3 27 27 H 1.08997 * 109.47241 * 149.97934 * 1 2 3 28 28 H 1.08999 * 109.47014 * 90.02132 * 5 4 3 29 29 H 1.08998 * 109.47149 * 210.02442 * 5 4 3 30 30 H 1.09006 * 109.47255 * 330.02401 * 5 4 3 31 31 H 1.09000 * 109.47247 * 270.17736 * 7 6 4 32 32 H 1.09002 * 109.46972 * 30.18057 * 7 6 4 33 33 H 1.09000 * 109.46857 * 150.17650 * 7 6 4 34 34 H 1.09005 * 110.32443 * 98.47510 * 11 9 8 35 35 H 1.08998 * 110.33026 * 336.37321 * 11 9 8 36 36 H 1.08999 * 110.32366 * 118.84769 * 12 11 9 37 37 H 1.08990 * 110.32675 * 241.05424 * 12 11 9 38 38 H 1.09003 * 110.41133 * 142.62991 * 13 12 11 39 39 H 1.08992 * 110.40749 * 264.95333 * 13 12 11 40 40 H 1.08996 * 109.47708 * 296.59545 * 15 14 13 41 41 H 1.09001 * 109.47124 * 56.59962 * 15 14 13 42 42 H 1.08994 * 109.47219 * 293.91533 * 16 15 14 43 43 H 1.09004 * 109.46536 * 53.91583 * 16 15 14 44 44 H 0.97010 * 119.99883 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7898 1.5008 -0.0013 6 6 3.6142 -0.7153 0.0046 7 6 4.8350 -1.5989 0.0111 8 6 2.3271 -1.1330 -0.0004 9 6 1.8600 -2.5658 0.0000 10 1 2.6753 -3.2324 0.2807 11 6 1.3030 -2.9508 -1.3874 12 6 0.1002 -3.8722 -1.0975 13 6 0.0307 -3.9686 0.4418 14 7 0.7081 -2.7380 0.9249 15 6 1.1655 -2.8987 2.3116 16 6 1.9307 -1.6465 2.7446 17 6 2.2701 -1.7467 4.2094 18 1 1.9699 -2.6163 4.7751 19 6 2.9632 -0.7278 4.8278 20 7 3.3276 0.3319 4.1393 21 14 3.3835 -0.8517 6.6437 22 1 4.7044 -1.5114 6.8022 23 1 3.4364 0.5101 7.2336 24 1 2.3438 -1.6522 7.3388 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 5.0835 1.7156 1.0262 29 1 5.6089 0.9983 -0.5158 30 1 4.5559 2.4335 -0.5148 31 1 5.1338 -1.8133 -1.0150 32 1 5.6489 -1.0902 0.5278 33 1 4.6053 -2.5321 0.5252 34 1 2.0586 -3.4847 -1.9638 35 1 0.9769 -2.0605 -1.9250 36 1 -0.8165 -3.4332 -1.4911 37 1 0.2654 -4.8582 -1.5316 38 1 -1.0070 -3.9872 0.7750 39 1 0.5573 -4.8567 0.7911 40 1 0.3042 -3.0420 2.9640 41 1 1.8212 -3.7667 2.3796 42 1 2.8491 -1.5628 2.1637 43 1 1.3116 -0.7656 2.5746 44 1 3.8150 1.0490 4.5745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = 52.143325 kcal Electronic energy + Delta-G solvation = -23372.122935 eV Core-core repulsion = 20324.891544 eV Total energy + Delta-G solvation = -3047.231392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21268 -39.61765 -35.52623 -34.80048 -33.48919 -33.26892 -30.31870 -30.08133 -29.72402 -27.15233 -26.24194 -25.75131 -23.11251 -21.79617 -21.42974 -20.22467 -19.94945 -18.45302 -17.21009 -16.76593 -16.53642 -16.20780 -16.00964 -15.33836 -15.01285 -14.47471 -14.41998 -14.17025 -13.93950 -13.81194 -13.66257 -13.40125 -13.32931 -13.15772 -12.99306 -12.84110 -12.68378 -12.61523 -12.44164 -12.36355 -12.17673 -11.89579 -11.72575 -11.35803 -11.22710 -11.10575 -11.04646 -10.48434 -9.68908 -9.16470 -8.77085 -8.11407 -6.22282 1.17502 1.34982 1.36670 1.46893 1.92004 2.06978 2.40384 3.19206 3.30340 3.82670 3.92645 3.98053 4.03213 4.27016 4.28040 4.41989 4.44685 4.48195 4.59485 4.64143 4.66495 4.67888 4.71993 4.73870 4.86846 4.97253 4.98766 5.03064 5.11992 5.14811 5.21158 5.23353 5.36260 5.41222 5.48063 5.52240 5.56521 5.84323 5.96482 6.08820 6.20141 6.31920 6.43752 6.48667 6.95971 7.09665 7.44198 8.96289 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.007969 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.255653 B = 3512.738542 C = 4623.594496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.090 3.910 3 N -0.346 5.346 4 N -0.377 5.377 5 C 0.103 3.897 6 C 0.077 3.923 7 C -0.082 4.082 8 C -0.215 4.215 9 C 0.148 3.852 10 H 0.040 0.960 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.026 3.974 14 N -0.510 5.510 15 C 0.068 3.932 16 C 0.052 3.948 17 C -0.546 4.546 18 H 0.050 0.950 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.013 0.987 43 H -0.017 1.017 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -6.403 -13.777 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.076 4.076 3 N -0.170 5.170 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.051 4.051 7 C -0.140 4.140 8 C -0.227 4.227 9 C 0.039 3.961 10 H 0.058 0.942 11 C -0.147 4.147 12 C -0.149 4.149 13 C -0.102 4.102 14 N -0.234 5.234 15 C -0.061 4.061 16 C 0.015 3.985 17 C -0.585 4.585 18 H 0.068 0.932 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.001 0.999 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.210 -4.401 -13.755 14.444 hybrid contribution 0.953 -0.923 1.800 2.236 sum 1.163 -5.324 -11.955 13.139 Atomic orbital electron populations 1.19989 0.86226 1.02560 1.01689 1.22251 0.97399 0.90153 0.97748 1.77066 0.87581 1.24050 1.28269 1.48241 1.05329 1.04548 1.57757 1.21902 0.83933 0.95104 1.02815 1.21136 0.97784 0.84908 1.01305 1.20444 0.92175 0.97451 1.03946 1.19374 0.90855 0.95635 1.16819 1.20732 0.91880 0.90264 0.93273 0.94161 1.22308 0.98025 0.99676 0.94653 1.22263 0.98608 1.00209 0.93804 1.23184 0.99803 0.90865 0.96327 1.65357 1.22447 1.34201 1.01371 1.22118 0.97250 0.97504 0.89193 1.18865 0.94272 0.91862 0.93550 1.21695 1.35715 1.04083 0.97017 0.93202 1.25777 0.95988 0.95052 1.02067 1.70184 1.39568 1.08252 1.37253 0.85652 0.78787 0.77173 0.80612 1.19775 1.21220 1.19248 0.93026 0.91934 0.88751 0.92648 0.86843 0.88878 0.87630 0.91165 0.90877 0.90061 0.91574 0.90197 0.89448 0.89912 0.94260 0.92918 0.96627 0.96916 0.99897 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.69 9.43 71.24 0.67 -1.02 16 2 C 0.09 3.80 6.28 43.10 0.27 4.07 16 3 N -0.35 -15.63 12.58 -47.39 -0.60 -16.22 16 4 N -0.38 -15.00 4.01 -356.04 -1.43 -16.43 16 5 C 0.10 3.10 11.09 127.77 1.42 4.52 16 6 C 0.08 2.92 5.93 41.40 0.25 3.17 16 7 C -0.08 -2.40 9.65 71.24 0.69 -1.71 16 8 C -0.22 -8.43 2.57 -20.14 -0.05 -8.48 16 9 C 0.15 4.99 2.12 44.28 0.09 5.08 16 10 H 0.04 1.42 6.71 -2.39 -0.02 1.40 16 11 C -0.11 -2.71 6.15 31.49 0.19 -2.51 16 12 C -0.11 -2.33 7.00 31.49 0.22 -2.11 16 13 C 0.03 0.70 6.49 86.45 0.56 1.26 16 14 N -0.51 -18.31 3.72 -860.62 -3.20 -21.51 16 15 C 0.07 2.97 4.84 86.31 0.42 3.39 16 16 C 0.05 2.82 3.78 29.85 0.11 2.93 16 17 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.58 5.46 84.65 0.46 1.04 16 20 N -0.91 -56.57 13.29 21.45 0.28 -56.29 16 21 Si 0.95 45.74 29.54 68.60 2.03 47.77 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H 0.05 2.13 8.14 -2.38 -0.02 2.12 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 3.02 6.71 -2.39 -0.02 3.00 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.11 2.46 7.68 -2.39 -0.02 2.44 16 30 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 1.99 7.74 -2.39 -0.02 1.97 16 33 H 0.07 2.25 7.05 -2.39 -0.02 2.24 16 34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.07 1.73 7.42 -2.39 -0.02 1.71 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.04 7.93 -2.39 -0.02 1.02 16 40 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 42 H 0.01 0.72 5.33 -2.39 -0.01 0.70 16 43 H -0.02 -1.08 7.39 -2.38 -0.02 -1.10 16 44 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -74.17 343.72 3.59 -70.59 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.96 Total: 14.38 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.53 Total: -22.28 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.94 Total: -110.45 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.17 3.59 -70.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.729 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds