Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.89878 * 2 1 4 4 N 1.40088 * 108.20268 * 180.25476 * 3 2 1 5 5 C 1.46503 * 126.03360 * 179.74139 * 4 3 2 6 6 C 1.34947 * 107.92804 * 359.71934 * 4 3 2 7 7 C 1.50695 * 126.12783 * 180.02562 * 6 4 3 8 8 C 1.35314 * 107.74281 * 359.97438 * 6 4 3 9 9 C 1.50708 * 126.03595 * 179.97438 * 8 6 4 10 10 H 1.08994 * 110.42047 * 347.31736 * 9 8 6 11 11 C 1.54907 * 110.37058 * 109.63158 * 9 8 6 12 12 C 1.55139 * 101.65235 * 155.89975 * 11 9 8 13 13 C 1.54321 * 103.01993 * 324.34356 * 12 11 9 14 14 N 1.47442 * 107.23052 * 22.28449 * 13 12 11 15 15 C 1.46906 * 111.00046 * 123.25559 * 14 13 12 16 16 H 1.08996 * 109.47105 * 297.55998 * 15 14 13 17 17 C 1.53000 * 109.46915 * 57.55911 * 15 14 13 18 18 C 1.50700 * 109.47187 * 177.55585 * 15 14 13 19 19 H 1.08003 * 120.00134 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00035 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00147 * 180.02562 * 20 18 15 22 22 Si 1.86803 * 119.99668 * 0.02562 * 20 18 15 23 23 H 1.48496 * 109.47267 * 90.00494 * 22 20 18 24 24 H 1.48502 * 109.46985 * 209.99922 * 22 20 18 25 25 H 1.48493 * 109.47360 * 329.99785 * 22 20 18 26 26 H 1.08994 * 109.47324 * 270.20674 * 1 2 3 27 27 H 1.09000 * 109.47125 * 30.21798 * 1 2 3 28 28 H 1.09005 * 109.46956 * 150.20893 * 1 2 3 29 29 H 1.08994 * 109.47052 * 269.97813 * 5 4 3 30 30 H 1.09004 * 109.46892 * 29.97724 * 5 4 3 31 31 H 1.08998 * 109.46753 * 149.97345 * 5 4 3 32 32 H 1.08997 * 109.47461 * 269.97972 * 7 6 4 33 33 H 1.09001 * 109.47165 * 29.97529 * 7 6 4 34 34 H 1.08994 * 109.47245 * 149.97586 * 7 6 4 35 35 H 1.08994 * 110.99265 * 37.80504 * 11 9 8 36 36 H 1.09005 * 111.02001 * 274.00438 * 11 9 8 37 37 H 1.09002 * 110.70583 * 205.96397 * 12 11 9 38 38 H 1.09001 * 110.70643 * 82.72638 * 12 11 9 39 39 H 1.08996 * 109.88741 * 262.88181 * 13 12 11 40 40 H 1.08996 * 109.88665 * 141.68734 * 13 12 11 41 41 H 1.09002 * 109.47312 * 184.81029 * 17 15 14 42 42 H 1.09005 * 109.46983 * 304.81068 * 17 15 14 43 43 H 1.08997 * 109.47388 * 64.80585 * 17 15 14 44 44 H 0.97005 * 119.99813 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 3.6142 -0.7154 -0.0032 7 6 4.8350 -1.5989 -0.0070 8 6 2.3272 -1.1330 0.0048 9 6 1.8600 -2.5658 0.0098 10 1 2.6882 -3.2367 -0.2180 11 6 1.2367 -2.9249 1.3818 12 6 0.3024 -4.1040 1.0025 13 6 -0.2099 -3.7051 -0.3975 14 7 0.7631 -2.7529 -0.9637 15 6 1.2796 -3.2319 -2.2529 16 1 1.8106 -4.1722 -2.1048 17 6 0.1140 -3.4513 -3.2194 18 6 2.2231 -2.2073 -2.8281 19 1 2.4198 -1.2919 -2.2897 20 6 2.8352 -2.4383 -4.0417 21 7 3.6590 -1.5443 -4.5435 22 14 2.4944 -4.0212 -4.9733 23 1 1.3335 -3.8231 -5.8778 24 1 3.6887 -4.3909 -5.7746 25 1 2.1902 -5.1079 -4.0081 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 5.0779 1.7137 -1.0427 30 1 4.5587 2.4343 0.4998 31 1 5.6117 0.9992 0.4978 32 1 5.1244 -1.8144 -1.0355 33 1 5.6536 -1.0898 0.5016 34 1 4.6101 -2.5316 0.5101 35 1 0.6656 -2.0875 1.7824 36 1 2.0031 -3.2455 2.0875 37 1 -0.5250 -4.1823 1.7077 38 1 0.8609 -5.0389 0.9566 39 1 -1.1874 -3.2304 -0.3133 40 1 -0.2774 -4.5881 -1.0330 41 1 0.4875 -3.8871 -4.1461 42 1 -0.6113 -4.1273 -2.7665 43 1 -0.3647 -2.4959 -3.4342 44 1 4.0893 -1.7068 -5.3975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = 69.570994 kcal Electronic energy + Delta-G solvation = -23594.580195 eV Core-core repulsion = 20548.104524 eV Total energy + Delta-G solvation = -3046.475671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15321 -39.77837 -35.61821 -34.76970 -33.57096 -33.02874 -30.30363 -29.91175 -29.54192 -27.30396 -26.77623 -25.81469 -23.19128 -21.99159 -20.95762 -20.19830 -19.88116 -18.67655 -17.42377 -16.95610 -16.43567 -16.10003 -15.88296 -15.11420 -14.73162 -14.58721 -14.33776 -14.26532 -14.15063 -13.92984 -13.86644 -13.59124 -13.33602 -13.16652 -12.96631 -12.70547 -12.66170 -12.53212 -12.24934 -12.17812 -12.00216 -11.89294 -11.75987 -11.45357 -11.33865 -11.11213 -10.93355 -10.64382 -9.71582 -8.81041 -8.75115 -8.13475 -6.13568 1.15295 1.30546 1.34283 1.43128 1.89411 2.07679 2.38214 3.18143 3.40424 3.84718 3.98239 4.00857 4.08925 4.29533 4.32714 4.37596 4.45754 4.54723 4.62435 4.64044 4.70899 4.73044 4.76924 4.81606 4.81757 4.86575 4.96683 5.04600 5.09298 5.10857 5.11885 5.19484 5.26754 5.36279 5.48031 5.51834 5.60071 5.63207 5.78983 6.12314 6.25708 6.39748 6.56269 6.87309 7.02240 7.07671 7.50047 9.00891 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.009432 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.904338 B = 2967.791499 C = 4088.495234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.089 3.911 3 N -0.352 5.352 4 N -0.388 5.388 5 C 0.101 3.899 6 C 0.074 3.926 7 C -0.078 4.078 8 C -0.201 4.201 9 C 0.166 3.834 10 H 0.034 0.966 11 C -0.113 4.113 12 C -0.130 4.130 13 C 0.031 3.969 14 N -0.515 5.515 15 C 0.183 3.817 16 H -0.015 1.015 17 C -0.142 4.142 18 C -0.482 4.482 19 H 0.062 0.938 20 C 0.013 3.987 21 N -0.951 5.951 22 Si 0.935 3.065 23 H -0.276 1.276 24 H -0.306 1.306 25 H -0.253 1.253 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -3.443 13.668 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 N -0.175 5.175 4 N -0.171 5.171 5 C -0.040 4.040 6 C -0.053 4.053 7 C -0.137 4.137 8 C -0.212 4.212 9 C 0.057 3.943 10 H 0.052 0.948 11 C -0.151 4.151 12 C -0.168 4.168 13 C -0.096 4.096 14 N -0.239 5.239 15 C 0.074 3.926 16 H 0.003 0.997 17 C -0.199 4.199 18 C -0.520 4.520 19 H 0.080 0.920 20 C -0.183 4.183 21 N -0.593 5.593 22 Si 0.765 3.235 23 H -0.203 1.203 24 H -0.235 1.235 25 H -0.177 1.177 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.504 -1.568 13.421 13.743 hybrid contribution 0.814 -1.744 -1.417 2.390 sum -1.690 -3.312 12.004 12.567 Atomic orbital electron populations 1.20298 0.85887 1.03737 1.02675 1.22387 0.97713 0.89988 0.97573 1.77054 0.87408 1.23983 1.29099 1.48351 1.05521 1.04535 1.58667 1.21948 0.83896 0.95073 1.03066 1.21118 0.97905 0.84825 1.01477 1.20364 0.92695 0.98136 1.02462 1.19473 0.90739 0.95952 1.15077 1.20431 0.92302 0.90146 0.91409 0.94757 1.22713 0.98869 0.98347 0.95203 1.22744 0.99820 0.97632 0.96635 1.22980 0.97095 0.94554 0.95010 1.63235 1.13736 1.44572 1.02352 1.19664 0.92008 0.92780 0.88107 0.99725 1.22137 0.98857 1.00796 0.98150 1.21446 1.22310 1.04650 1.03630 0.92006 1.25613 0.95417 0.98770 0.98499 1.70051 1.32526 1.36905 1.19839 0.86075 0.75992 0.82205 0.79238 1.20314 1.23460 1.17734 0.89817 0.93020 0.88157 0.92202 0.88566 0.87101 0.92501 0.89026 0.89177 0.90723 0.90283 0.88632 0.91612 0.89916 0.93205 0.95434 0.91490 0.93222 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 9.90 71.24 0.71 -1.63 16 2 C 0.09 3.67 7.06 43.10 0.30 3.98 16 3 N -0.35 -15.25 12.58 -47.38 -0.60 -15.85 16 4 N -0.39 -15.18 4.01 -356.04 -1.43 -16.60 16 5 C 0.10 2.86 11.27 127.77 1.44 4.30 16 6 C 0.07 2.92 6.57 41.40 0.27 3.19 16 7 C -0.08 -2.54 9.70 71.23 0.69 -1.85 16 8 C -0.20 -8.13 2.94 -20.14 -0.06 -8.19 16 9 C 0.17 6.09 2.18 44.64 0.10 6.19 16 10 H 0.03 1.38 6.75 -2.39 -0.02 1.37 16 11 C -0.11 -3.06 6.48 31.98 0.21 -2.85 16 12 C -0.13 -3.05 6.94 31.78 0.22 -2.83 16 13 C 0.03 0.91 6.02 86.65 0.52 1.43 16 14 N -0.51 -19.69 2.54 -844.29 -2.14 -21.83 16 15 C 0.18 8.35 1.28 44.17 0.06 8.40 16 16 H -0.01 -0.69 7.11 -2.39 -0.02 -0.71 16 17 C -0.14 -5.97 8.51 71.98 0.61 -5.35 16 18 C -0.48 -26.87 8.63 25.60 0.22 -26.65 16 19 H 0.06 3.86 5.47 -2.91 -0.02 3.84 16 20 C 0.01 0.73 5.45 84.65 0.46 1.19 16 21 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 22 Si 0.94 45.70 24.32 68.60 1.67 47.36 16 23 H -0.28 -13.16 6.91 99.48 0.69 -12.47 16 24 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 25 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.10 3.59 5.96 -2.38 -0.01 3.57 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.11 2.33 7.05 -2.39 -0.02 2.32 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.25 7.08 -2.39 -0.02 2.23 16 34 H 0.09 2.60 7.40 -2.39 -0.02 2.58 16 35 H 0.07 2.00 7.66 -2.39 -0.02 1.98 16 36 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.46 6.20 -2.39 -0.01 1.45 16 41 H 0.03 1.20 3.40 -2.39 -0.01 1.19 16 42 H 0.07 2.31 6.22 -2.38 -0.01 2.29 16 43 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -72.73 330.94 4.46 -68.27 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.91 Total: 18.83 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.75 Total: -20.67 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.87 Total: -113.79 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.36 kcal Total: -72.73 4.46 -68.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.838 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds