Wall clock time and date at job start Mon Mar 30 2020 01:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99786 * 2 1 4 4 C 1.52998 * 109.46897 * 184.70464 * 3 2 1 5 5 N 1.46899 * 109.47134 * 69.21758 * 4 3 2 6 6 C 1.46890 * 111.00332 * 286.18094 * 5 4 3 7 7 C 1.50705 * 109.47451 * 302.53022 * 6 5 4 8 8 H 1.08000 * 119.99694 * 4.56029 * 7 6 5 9 9 C 1.37874 * 120.00341 * 184.56559 * 7 6 5 10 10 N 1.31512 * 119.99989 * 354.83986 * 9 7 6 11 11 Si 1.86803 * 119.99886 * 174.84007 * 9 7 6 12 12 H 1.48495 * 109.47072 * 4.99993 * 11 9 7 13 13 H 1.48498 * 109.47008 * 125.00225 * 11 9 7 14 14 H 1.48505 * 109.46767 * 244.99794 * 11 9 7 15 15 C 1.46910 * 110.99798 * 162.22705 * 5 4 3 16 16 C 1.52995 * 109.46883 * 190.00285 * 15 5 4 17 17 H 1.08996 * 109.47456 * 305.00022 * 16 15 5 18 18 C 1.53008 * 109.47458 * 64.99851 * 16 15 5 19 19 C 1.50701 * 109.47166 * 184.99816 * 16 15 5 20 20 C 1.38229 * 120.00130 * 299.72629 * 19 16 15 21 21 C 1.38239 * 120.00104 * 179.78455 * 20 19 16 22 22 C 1.38240 * 119.99660 * 0.44182 * 21 20 19 23 23 C 1.38229 * 120.00001 * 359.81136 * 22 21 20 24 24 C 1.38234 * 119.99883 * 119.99772 * 19 16 15 25 25 H 1.08994 * 109.46725 * 184.93769 * 1 2 3 26 26 H 1.09001 * 109.46351 * 304.93267 * 1 2 3 27 27 H 1.08993 * 109.47150 * 64.93321 * 1 2 3 28 28 H 1.09002 * 109.47230 * 64.70690 * 3 2 1 29 29 H 1.09002 * 109.47295 * 304.70214 * 3 2 1 30 30 H 1.09005 * 109.47165 * 309.21909 * 4 3 2 31 31 H 1.09005 * 109.47145 * 189.22184 * 4 3 2 32 32 H 1.09004 * 109.47318 * 62.52957 * 6 5 4 33 33 H 1.08999 * 109.47506 * 182.52847 * 6 5 4 34 34 H 0.96997 * 120.00144 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47037 * 70.00450 * 15 5 4 36 36 H 1.09002 * 109.46575 * 309.99750 * 15 5 4 37 37 H 1.08996 * 109.46648 * 59.99676 * 18 16 15 38 38 H 1.08990 * 109.46985 * 179.97438 * 18 16 15 39 39 H 1.08998 * 109.46974 * 300.00454 * 18 16 15 40 40 H 1.07999 * 120.00175 * 359.97438 * 20 19 16 41 41 H 1.08001 * 119.99847 * 180.27601 * 21 20 19 42 42 H 1.07996 * 119.99573 * 179.83487 * 22 21 20 43 43 H 1.07997 * 120.00073 * 179.97438 * 23 22 21 44 44 H 1.08008 * 120.00411 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5310 1.1866 -0.1183 5 7 3.8814 0.7021 -1.4601 6 6 3.5729 -0.7271 -1.6010 7 6 4.3103 -1.5070 -0.5431 8 1 4.8858 -0.9869 0.2084 9 6 4.2504 -2.8844 -0.5346 10 7 3.4698 -3.5139 -1.3856 11 14 5.2779 -3.8564 0.6855 12 1 5.9716 -2.9197 1.6055 13 1 4.3949 -4.7571 1.4693 14 1 6.2840 -4.6654 -0.0485 15 6 5.2940 0.9682 -1.7636 16 6 5.5603 0.6824 -3.2429 17 1 5.2495 -0.3355 -3.4780 18 6 4.7685 1.6690 -4.1036 19 6 7.0321 0.8366 -3.5273 20 6 7.6547 2.0514 -3.3094 21 6 9.0058 2.1915 -3.5660 22 6 9.7324 1.1193 -4.0492 23 6 9.1087 -0.0940 -4.2721 24 6 7.7585 -0.2353 -4.0114 25 1 -0.3632 -1.0238 0.0885 26 1 -0.3632 0.5885 0.8425 27 1 -0.3633 0.4354 -0.9308 28 1 1.7569 1.8160 0.9292 29 1 1.6236 1.8754 -0.8449 30 1 3.8999 0.4844 0.6293 31 1 3.9857 2.1637 0.0455 32 1 2.5001 -0.8805 -1.4838 33 1 3.8832 -1.0703 -2.5879 34 1 3.4280 -4.4829 -1.3799 35 1 5.9248 0.3250 -1.1501 36 1 5.5213 2.0123 -1.5486 37 1 5.0793 2.6869 -3.8685 38 1 4.9586 1.4657 -5.1574 39 1 3.7039 1.5576 -3.8979 40 1 7.0862 2.8901 -2.9357 41 1 9.4931 3.1394 -3.3915 42 1 10.7873 1.2296 -4.2522 43 1 9.6762 -0.9315 -4.6500 44 1 7.2713 -1.1834 -4.1854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072688918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:12 Heat of formation + Delta-G solvation = -21.079194 kcal Electronic energy + Delta-G solvation = -22263.514379 eV Core-core repulsion = 19180.815069 eV Total energy + Delta-G solvation = -3082.699310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.25478 -37.74679 -36.31675 -33.72819 -32.22663 -30.63831 -29.53657 -28.55117 -26.81648 -25.69732 -24.54075 -23.11592 -22.31619 -22.06400 -20.07555 -18.90581 -16.64987 -16.39058 -15.86166 -15.53375 -14.98747 -14.71490 -14.66320 -14.12565 -13.90217 -13.70848 -13.32313 -13.14975 -12.87387 -12.54068 -12.33709 -12.02902 -11.64202 -11.45682 -11.28607 -11.06418 -10.96593 -10.89832 -10.69771 -10.61408 -10.50586 -10.15863 -10.08837 -9.80031 -9.71869 -9.31071 -8.88069 -8.65172 -8.36528 -8.17968 -7.03985 -5.86560 -3.89949 1.65475 1.67274 3.34273 3.42274 3.45570 4.07227 4.52880 4.54550 4.92444 5.12395 5.18247 5.30062 5.44200 5.46215 5.60754 5.66770 5.77746 5.82033 5.82770 5.89753 5.93534 5.98238 6.00810 6.09059 6.18411 6.24533 6.28898 6.33864 6.37985 6.48443 6.67793 6.71683 6.75355 6.79121 6.86726 6.90272 7.13749 7.29904 7.43617 7.80182 7.93737 8.14357 8.21129 8.45291 8.50996 9.17870 9.72639 11.19414 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.006128 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.945919 B = 4567.765034 C = 5918.399777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.179 3.821 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.074 3.926 16 C -0.052 4.052 17 H 0.090 0.910 18 C -0.128 4.128 19 C -0.058 4.058 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.121 4.121 24 C -0.113 4.113 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.257 0.743 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 11.166 -3.348 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.073 4.073 5 N -0.262 5.262 6 C 0.054 3.946 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.135 4.135 10 N -0.531 5.531 11 Si 0.707 3.293 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.055 4.055 16 C -0.071 4.071 17 H 0.108 0.892 18 C -0.185 4.185 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.139 4.139 24 C -0.132 4.132 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.641 11.084 -3.741 12.252 hybrid contribution 0.961 -0.986 1.374 1.945 sum 4.603 10.098 -2.367 11.347 Atomic orbital electron populations 1.22628 0.83375 1.01965 0.98543 1.88328 1.17473 1.26583 1.94741 1.22463 0.94678 0.85228 0.98077 1.21992 0.93190 0.98911 0.93247 1.62593 1.17274 1.21819 1.24477 1.20009 0.98609 0.80130 0.95833 1.21653 1.29929 0.91686 1.13470 0.93033 1.24841 0.95307 0.97798 0.95589 1.69961 1.37834 1.08090 1.37171 0.86754 0.80472 0.80351 0.81676 1.20111 1.21260 1.21181 1.21875 0.91047 0.98418 0.94153 1.20217 0.89080 1.01718 0.96075 0.89223 1.21678 1.01346 0.97704 0.97777 1.20077 0.96332 0.93095 0.96320 1.21006 0.94491 0.97430 1.00587 1.21063 0.94438 0.98514 1.00246 1.21026 0.99416 0.93612 1.01323 1.21106 0.94932 0.97346 1.00542 1.21210 0.94075 0.98804 0.99065 0.90258 0.95464 0.94919 0.94767 0.93691 0.92228 0.92174 0.92392 0.95593 0.93307 0.94054 0.93357 0.93703 0.94079 0.91037 0.86336 0.86695 0.86797 0.86543 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.37 7.94 -35.23 -0.28 -7.65 16 3 C 0.07 1.29 6.21 37.16 0.23 1.52 16 4 C 0.06 1.06 5.33 -3.83 -0.02 1.04 16 5 N -0.54 -11.15 4.11 -236.07 -0.97 -12.12 16 6 C 0.18 4.54 4.57 -4.98 -0.02 4.51 16 7 C -0.53 -14.53 7.35 -34.44 -0.25 -14.78 16 8 H 0.05 1.43 5.96 -52.49 -0.31 1.12 16 9 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 11 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C 0.07 1.40 3.94 -3.82 -0.02 1.39 16 16 C -0.05 -0.93 2.49 -91.77 -0.23 -1.15 16 17 H 0.09 1.85 5.95 -51.93 -0.31 1.54 16 18 C -0.13 -1.99 8.89 37.16 0.33 -1.66 16 19 C -0.06 -0.94 4.78 -104.63 -0.50 -1.44 16 20 C -0.12 -1.69 8.76 -39.58 -0.35 -2.03 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.14 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 24 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.32 5.88 -51.93 -0.31 1.01 16 31 H 0.06 0.99 7.77 -51.93 -0.40 0.58 16 32 H 0.06 1.61 5.69 -51.93 -0.30 1.31 16 33 H 0.03 0.71 6.11 -51.93 -0.32 0.39 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.04 0.91 6.84 -51.93 -0.36 0.55 16 36 H 0.05 0.82 7.29 -51.93 -0.38 0.44 16 37 H 0.04 0.63 7.37 -51.93 -0.38 0.25 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.20 7.75 -51.93 -0.40 0.79 16 40 H 0.12 1.55 7.16 -52.49 -0.38 1.17 16 41 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.99 7.95 -52.48 -0.42 1.58 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -30.32 347.84 -8.87 -39.19 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.19 Total: 1.70 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.39 Total: -17.64 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.23 Total: -37.85 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.28 Total: -7.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.32 -8.87 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072688918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.113 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds