Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99971 * 2 1 4 4 C 1.53005 * 109.47054 * 68.25166 * 3 2 1 5 5 C 1.53002 * 109.47046 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47318 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46877 * 60.00330 * 10 8 6 12 12 H 1.48494 * 109.47283 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47256 * 300.00444 * 10 8 6 14 14 C 1.46897 * 110.99996 * 236.04271 * 2 1 3 15 15 H 1.09003 * 109.47149 * 65.13745 * 14 2 1 16 16 C 1.53006 * 109.46950 * 185.13139 * 14 2 1 17 17 C 1.52998 * 109.47171 * 183.72356 * 16 14 2 18 18 O 1.42898 * 109.47096 * 174.64940 * 17 16 14 19 19 C 1.50694 * 109.47504 * 305.13146 * 14 2 1 20 20 C 1.38242 * 120.00144 * 319.72853 * 19 14 2 21 21 C 1.38231 * 120.00365 * 179.78583 * 20 19 14 22 22 C 1.38241 * 119.99383 * 0.44321 * 21 20 19 23 23 C 1.38232 * 120.00230 * 359.80664 * 22 21 20 24 24 C 1.38230 * 120.00240 * 139.99964 * 19 14 2 25 25 H 1.09002 * 109.46669 * 60.00220 * 1 2 3 26 26 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47035 * 300.00244 * 1 2 3 28 28 H 1.09001 * 109.47257 * 308.25663 * 3 2 1 29 29 H 1.09004 * 109.47070 * 188.25021 * 3 2 1 30 30 H 1.08996 * 109.47293 * 300.00099 * 4 3 2 31 31 H 1.09003 * 109.47203 * 60.00159 * 4 3 2 32 32 H 1.08996 * 109.47446 * 300.00361 * 5 4 3 33 33 H 1.09003 * 109.46700 * 60.00206 * 5 4 3 34 34 H 0.97007 * 120.00050 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47043 * 303.72853 * 16 14 2 36 36 H 1.09003 * 109.46901 * 63.72230 * 16 14 2 37 37 H 1.08999 * 109.47108 * 294.65062 * 17 16 14 38 38 H 1.09005 * 109.47139 * 54.64938 * 17 16 14 39 39 H 0.96705 * 113.99861 * 179.97438 * 18 17 16 40 40 H 1.08001 * 119.99313 * 0.02562 * 20 19 14 41 41 H 1.07996 * 120.00321 * 180.27613 * 21 20 19 42 42 H 1.08004 * 119.99487 * 179.83864 * 22 21 20 43 43 H 1.08003 * 119.99992 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.99833 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6792 2.0391 1.3399 5 6 2.2281 3.4673 1.3401 6 6 1.9161 4.1252 2.6595 7 1 1.3803 3.5790 3.4218 8 6 2.3146 5.4241 2.8935 9 7 2.9666 6.0893 1.9650 10 14 1.9273 6.2398 4.5287 11 1 2.5582 5.4673 5.6289 12 1 2.4600 7.6259 4.5290 13 1 0.4561 6.2743 4.7285 14 6 1.9955 -0.7660 -1.1375 15 1 1.7223 -0.2686 -2.0682 16 6 3.5196 -0.8514 -1.0333 17 6 4.0757 -1.5685 -2.2651 18 8 5.5039 -1.5387 -2.2293 19 6 1.4123 -2.1554 -1.1206 20 6 1.2634 -2.8280 0.0780 21 6 0.7243 -4.1008 0.0941 22 6 0.3426 -4.7046 -1.0895 23 6 0.4962 -4.0341 -2.2885 24 6 1.0313 -2.7596 -2.3040 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.5316 1.9387 -0.8070 29 1 3.0752 1.3462 -0.1475 30 1 0.5996 2.0644 1.4874 31 1 2.1430 1.4719 2.1469 32 1 3.3078 3.4417 1.1928 33 1 1.7646 4.0347 0.5330 34 1 3.2473 7.0031 2.1298 35 1 3.9369 0.1541 -0.9789 36 1 3.7918 -1.4067 -0.1357 37 1 3.7338 -2.6035 -2.2681 38 1 3.7242 -1.0672 -3.1669 39 1 5.9254 -1.9766 -2.9815 40 1 1.5647 -2.3575 1.0022 41 1 0.6039 -4.6245 1.0308 42 1 -0.0762 -5.7001 -1.0772 43 1 0.1976 -4.5057 -3.2131 44 1 1.1513 -2.2357 -3.2408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075899515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -35.083575 kcal Electronic energy + Delta-G solvation = -21482.595454 eV Core-core repulsion = 18399.288868 eV Total energy + Delta-G solvation = -3083.306585 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00569 -37.67084 -36.77939 -34.05305 -32.66916 -31.14927 -30.78908 -30.20243 -26.94291 -26.29630 -24.05527 -22.85394 -22.24043 -21.87471 -20.04045 -19.69923 -17.49149 -16.95682 -16.27196 -15.83662 -15.72644 -14.96900 -14.70819 -14.61718 -14.30237 -14.13358 -13.71696 -13.43350 -13.13677 -12.99242 -12.77085 -12.30855 -12.02939 -11.74637 -11.55056 -11.45112 -11.23359 -11.19430 -11.03047 -10.81355 -10.66014 -10.48733 -10.41276 -10.02020 -9.53375 -9.29336 -9.04121 -8.98469 -8.75053 -8.30065 -8.09296 -5.95503 -3.97473 1.24328 1.32812 3.36583 3.40566 3.43347 3.67939 3.82418 4.36547 4.50863 4.64190 4.81135 4.89326 5.00742 5.06708 5.17008 5.25671 5.31237 5.40074 5.41089 5.47284 5.52186 5.60143 5.68986 5.82362 5.87449 5.97612 6.01168 6.09167 6.16605 6.21163 6.34900 6.42265 6.44872 6.55197 6.73760 6.82539 6.92252 7.16333 7.35493 7.40004 7.51549 7.72939 7.88484 8.05142 8.48514 9.09556 9.66259 11.15956 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.003514 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.146173 B = 7965.297391 C = 8781.357068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.050 3.950 4 C -0.102 4.102 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.126 3.874 15 H 0.046 0.954 16 C -0.113 4.113 17 C 0.079 3.921 18 O -0.572 6.572 19 C -0.073 4.073 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.120 4.120 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.377 0.623 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -21.395 -10.849 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.077 4.077 4 C -0.140 4.140 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.017 3.983 15 H 0.064 0.936 16 C -0.151 4.151 17 C 0.001 3.999 18 O -0.377 6.377 19 C -0.073 4.073 20 C -0.109 4.109 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.223 0.777 40 H 0.152 0.848 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.854 -21.107 -9.893 23.484 hybrid contribution -0.465 0.631 -0.479 0.919 sum -3.319 -20.476 -10.372 23.192 Atomic orbital electron populations 1.22445 0.87476 1.01542 1.01106 1.62060 1.07792 1.15125 1.40677 1.22442 1.00005 0.85820 0.99387 1.21627 1.00152 0.98223 0.94044 1.19069 0.96223 0.89355 0.96920 1.21216 1.36115 0.97811 1.00510 0.92748 1.25022 0.95271 0.97453 0.96748 1.69957 1.39137 1.11095 1.33451 0.86665 0.78628 0.78405 0.84341 1.20219 1.21341 1.20289 1.20436 0.93842 0.90654 0.93348 0.93574 1.21577 0.92881 1.02489 0.98103 1.22164 0.80665 0.99217 0.97899 1.86508 1.19412 1.81515 1.50277 1.19825 0.98519 0.95570 0.93410 1.21164 0.97383 0.93819 0.98491 1.21210 0.99410 0.95544 0.98075 1.21126 1.00620 0.99823 0.92807 1.21042 1.00242 0.95048 0.97927 1.21012 0.99763 0.95586 0.97506 0.96077 0.91667 0.90577 0.95253 0.90649 0.93484 0.92600 0.96605 0.96898 0.93011 0.89881 0.90190 0.93547 0.94033 0.77712 0.84819 0.86188 0.86485 0.86406 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.92 60.07 0.54 0.85 16 2 N -0.53 -7.92 3.97 -236.28 -0.94 -8.86 16 3 C 0.05 0.88 4.81 -3.82 -0.02 0.86 16 4 C -0.10 -2.16 5.13 -26.73 -0.14 -2.30 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 7 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.13 1.60 1.77 -68.87 -0.12 1.48 16 15 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 16 C -0.11 -1.47 4.99 -26.73 -0.13 -1.60 16 17 C 0.08 0.86 6.59 37.16 0.24 1.10 16 18 O -0.57 -6.62 13.66 -35.23 -0.48 -7.10 16 19 C -0.07 -0.84 2.95 -104.63 -0.31 -1.15 16 20 C -0.09 -1.05 8.03 -39.58 -0.32 -1.36 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 24 C -0.12 -1.21 8.90 -39.59 -0.35 -1.56 16 25 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 26 H 0.06 0.84 5.93 -51.93 -0.31 0.53 16 27 H 0.08 1.12 6.55 -51.93 -0.34 0.78 16 28 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.08 1.34 5.73 -51.93 -0.30 1.04 16 30 H 0.05 0.98 6.62 -51.93 -0.34 0.63 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.08 1.22 6.01 -51.93 -0.31 0.90 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 2.46 9.12 45.56 0.42 2.87 16 40 H 0.13 1.66 7.73 -52.49 -0.41 1.26 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 1.01 8.04 -52.48 -0.42 0.59 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -32.04 351.49 -9.32 -41.36 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.56 Total: 0.69 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.35 Total: -21.71 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.20 Total: -35.54 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.48 Total: -7.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.04 -9.32 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.279 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds