Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99971 * 2 1 4 4 C 1.53005 * 109.47054 * 68.25166 * 3 2 1 5 5 C 1.53002 * 109.47046 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47318 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46877 * 60.00330 * 10 8 6 12 12 H 1.48494 * 109.47283 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47256 * 300.00444 * 10 8 6 14 14 C 1.46897 * 110.99996 * 236.04271 * 2 1 3 15 15 H 1.09003 * 109.47149 * 65.13745 * 14 2 1 16 16 C 1.53006 * 109.46950 * 185.13139 * 14 2 1 17 17 C 1.52998 * 109.47171 * 183.72356 * 16 14 2 18 18 O 1.42898 * 109.47096 * 174.64940 * 17 16 14 19 19 C 1.50694 * 109.47504 * 305.13146 * 14 2 1 20 20 C 1.38242 * 120.00144 * 319.72853 * 19 14 2 21 21 C 1.38231 * 120.00365 * 179.78583 * 20 19 14 22 22 C 1.38241 * 119.99383 * 0.44321 * 21 20 19 23 23 C 1.38232 * 120.00230 * 359.80664 * 22 21 20 24 24 C 1.38230 * 120.00240 * 139.99964 * 19 14 2 25 25 H 1.09002 * 109.46669 * 60.00220 * 1 2 3 26 26 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47035 * 300.00244 * 1 2 3 28 28 H 1.09001 * 109.47257 * 308.25663 * 3 2 1 29 29 H 1.09004 * 109.47070 * 188.25021 * 3 2 1 30 30 H 1.08996 * 109.47293 * 300.00099 * 4 3 2 31 31 H 1.09003 * 109.47203 * 60.00159 * 4 3 2 32 32 H 1.08996 * 109.47446 * 300.00361 * 5 4 3 33 33 H 1.09003 * 109.46700 * 60.00206 * 5 4 3 34 34 H 0.97007 * 120.00050 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.47043 * 303.72853 * 16 14 2 36 36 H 1.09003 * 109.46901 * 63.72230 * 16 14 2 37 37 H 1.08999 * 109.47108 * 294.65062 * 17 16 14 38 38 H 1.09005 * 109.47139 * 54.64938 * 17 16 14 39 39 H 0.96705 * 113.99861 * 179.97438 * 18 17 16 40 40 H 1.08001 * 119.99313 * 0.02562 * 20 19 14 41 41 H 1.07996 * 120.00321 * 180.27613 * 21 20 19 42 42 H 1.08004 * 119.99487 * 179.83864 * 22 21 20 43 43 H 1.08003 * 119.99992 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.99833 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6792 2.0391 1.3399 5 6 2.2281 3.4673 1.3401 6 6 1.9161 4.1252 2.6595 7 1 1.3803 3.5790 3.4218 8 6 2.3146 5.4241 2.8935 9 7 2.9666 6.0893 1.9650 10 14 1.9273 6.2398 4.5287 11 1 2.5582 5.4673 5.6289 12 1 2.4600 7.6259 4.5290 13 1 0.4561 6.2743 4.7285 14 6 1.9955 -0.7660 -1.1375 15 1 1.7223 -0.2686 -2.0682 16 6 3.5196 -0.8514 -1.0333 17 6 4.0757 -1.5685 -2.2651 18 8 5.5039 -1.5387 -2.2293 19 6 1.4123 -2.1554 -1.1206 20 6 1.2634 -2.8280 0.0780 21 6 0.7243 -4.1008 0.0941 22 6 0.3426 -4.7046 -1.0895 23 6 0.4962 -4.0341 -2.2885 24 6 1.0313 -2.7596 -2.3040 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.5316 1.9387 -0.8070 29 1 3.0752 1.3462 -0.1475 30 1 0.5996 2.0644 1.4874 31 1 2.1430 1.4719 2.1469 32 1 3.3078 3.4417 1.1928 33 1 1.7646 4.0347 0.5330 34 1 3.2473 7.0031 2.1298 35 1 3.9369 0.1541 -0.9789 36 1 3.7918 -1.4067 -0.1357 37 1 3.7338 -2.6035 -2.2681 38 1 3.7242 -1.0672 -3.1669 39 1 5.9254 -1.9766 -2.9815 40 1 1.5647 -2.3575 1.0022 41 1 0.6039 -4.6245 1.0308 42 1 -0.0762 -5.7001 -1.0772 43 1 0.1976 -4.5057 -3.2131 44 1 1.1513 -2.2357 -3.2408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075899515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = -55.668072 kcal Electronic energy + Delta-G solvation = -21483.488064 eV Core-core repulsion = 18399.288868 eV Total energy + Delta-G solvation = -3084.199196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91939 -38.68451 -37.75657 -35.85005 -34.21129 -32.64599 -31.67918 -31.14347 -28.63904 -27.45388 -25.61725 -23.69173 -23.44896 -23.03727 -21.63434 -20.80758 -18.51665 -18.33193 -17.74257 -17.02967 -16.61952 -16.52735 -15.93065 -15.85331 -15.56275 -15.20056 -14.86480 -14.33504 -14.31080 -14.15304 -14.01126 -13.73485 -13.51194 -13.23414 -12.94113 -12.70210 -12.63190 -12.44194 -12.41175 -12.16548 -12.09272 -11.83735 -11.68835 -11.40183 -11.27193 -11.08928 -10.87681 -10.54522 -9.74001 -9.55387 -9.31571 -8.19911 -6.31131 0.47367 0.57202 1.39520 1.43113 1.50978 2.40855 2.75220 2.92712 3.13009 3.42781 3.71782 3.97264 4.08042 4.16526 4.20746 4.26099 4.30201 4.34489 4.38527 4.44998 4.52585 4.58584 4.68825 4.70116 4.75370 4.79258 4.91988 4.98604 5.02925 5.10871 5.15181 5.20806 5.24437 5.28281 5.51749 5.61345 5.69566 5.72274 5.75079 5.85908 6.05852 6.16632 6.19357 6.27763 6.85389 6.90117 7.37992 8.91938 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.003514 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.146173 B = 7965.297391 C = 8781.357068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.063 3.937 4 C -0.086 4.086 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.131 3.869 15 H 0.051 0.949 16 C -0.112 4.112 17 C 0.086 3.914 18 O -0.595 6.595 19 C -0.084 4.084 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.050 0.950 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 -23.210 -11.240 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.261 5.261 3 C -0.064 4.064 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.023 3.977 15 H 0.068 0.932 16 C -0.150 4.150 17 C 0.008 3.992 18 O -0.404 6.404 19 C -0.084 4.084 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.141 4.141 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.967 -22.952 -10.300 25.468 hybrid contribution -0.099 1.124 -0.406 1.199 sum -4.066 -21.828 -10.706 24.649 Atomic orbital electron populations 1.22417 0.86729 1.02317 1.00662 1.61959 1.08472 1.13246 1.42391 1.22128 0.99888 0.87365 0.97048 1.21360 0.99844 0.95253 0.95986 1.18961 0.94539 0.92191 0.95415 1.21660 1.36405 0.98575 1.01521 0.92287 1.25995 0.94841 0.98146 1.00891 1.70094 1.40027 1.11554 1.35758 0.85494 0.78950 0.77289 0.79280 1.19198 1.20735 1.19073 1.20401 0.93530 0.91384 0.92348 0.93154 1.21534 0.93360 1.01190 0.98873 1.22079 0.80466 0.99602 0.97079 1.86453 1.19839 1.82140 1.51978 1.19688 0.99779 0.94755 0.94190 1.21112 0.98687 0.94819 0.97938 1.21410 0.99086 0.94997 0.99350 1.21464 0.99690 1.00789 0.92349 1.21379 0.99155 0.94546 0.99041 1.21196 0.99404 0.96153 0.97369 0.95814 0.90254 0.91643 0.95612 0.91130 0.93090 0.93111 0.99160 0.99184 0.92753 0.92158 0.91732 0.92409 0.92554 0.75231 0.86574 0.84890 0.84054 0.83844 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 8.92 127.69 1.14 1.87 16 2 N -0.54 -16.14 3.97 -901.45 -3.58 -19.72 16 3 C 0.06 2.29 4.81 86.30 0.42 2.71 16 4 C -0.09 -3.76 5.13 30.60 0.16 -3.60 16 5 C 0.03 1.46 4.97 29.85 0.15 1.61 16 6 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 9 N -0.93 -58.25 13.29 21.44 0.28 -57.97 16 10 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.13 3.31 1.77 44.17 0.08 3.39 16 15 H 0.05 1.23 8.00 -2.39 -0.02 1.22 16 16 C -0.11 -2.96 4.99 30.60 0.15 -2.80 16 17 C 0.09 1.78 6.59 71.98 0.47 2.25 16 18 O -0.60 -13.30 13.66 -148.98 -2.03 -15.33 16 19 C -0.08 -1.82 2.95 -19.87 -0.06 -1.88 16 20 C -0.11 -2.40 8.03 22.27 0.18 -2.22 16 21 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 22 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 23 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.12 -2.16 8.90 22.27 0.20 -1.96 16 25 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 26 H 0.08 1.97 5.93 -2.39 -0.01 1.96 16 27 H 0.06 1.93 6.55 -2.39 -0.02 1.91 16 28 H 0.03 0.94 8.09 -2.39 -0.02 0.93 16 29 H 0.07 2.63 5.73 -2.38 -0.01 2.62 16 30 H 0.05 2.15 6.62 -2.39 -0.02 2.14 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 35 H 0.06 1.84 6.01 -2.39 -0.01 1.83 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.07 7.07 -2.39 -0.02 1.05 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.40 4.63 9.12 -74.05 -0.68 3.95 16 40 H 0.12 2.95 7.73 -2.91 -0.02 2.93 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.13 1.88 8.04 -2.91 -0.02 1.86 16 Total: -1.00 -69.62 351.49 1.24 -68.38 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.29 Total: 14.80 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.25 Total: -37.47 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -3.30 Total: -77.69 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -2.03 Total: -15.33 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.62 1.24 -68.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.714 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds