Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00115 * 2 1 4 4 C 1.52992 * 109.47093 * 76.73211 * 3 2 1 5 5 C 1.53008 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47040 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00584 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99749 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47317 * 60.00533 * 10 8 6 12 12 H 1.48508 * 109.47153 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47346 * 300.00218 * 10 8 6 14 14 C 1.46898 * 110.99941 * 236.04162 * 2 1 3 15 15 H 1.09001 * 109.47103 * 153.55662 * 14 2 1 16 16 C 1.53002 * 109.47334 * 33.55950 * 14 2 1 17 17 C 1.53007 * 109.47030 * 66.14259 * 16 14 2 18 18 O 1.42898 * 109.46960 * 174.47593 * 17 16 14 19 19 C 1.50701 * 109.47270 * 273.55520 * 14 2 1 20 20 C 1.38233 * 119.99836 * 24.17384 * 19 14 2 21 21 C 1.38239 * 120.00064 * 179.78880 * 20 19 14 22 22 C 1.38240 * 119.99599 * 0.43067 * 21 20 19 23 23 C 1.38235 * 119.99828 * 359.82077 * 22 21 20 24 24 C 1.38228 * 120.00170 * 359.97288 * 23 22 21 25 25 H 1.08992 * 109.47335 * 171.60310 * 1 2 3 26 26 H 1.09003 * 109.47191 * 51.60229 * 1 2 3 27 27 H 1.08998 * 109.46928 * 291.60780 * 1 2 3 28 28 H 1.08996 * 109.46902 * 196.73255 * 3 2 1 29 29 H 1.09004 * 109.46897 * 316.73162 * 3 2 1 30 30 H 1.09005 * 109.47486 * 299.99803 * 4 3 2 31 31 H 1.09003 * 109.47689 * 59.99838 * 4 3 2 32 32 H 1.08996 * 109.46781 * 299.99981 * 5 4 3 33 33 H 1.09004 * 109.47000 * 59.99877 * 5 4 3 34 34 H 0.97005 * 119.99797 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47424 * 186.14693 * 16 14 2 36 36 H 1.09003 * 109.46601 * 306.14719 * 16 14 2 37 37 H 1.09003 * 109.46983 * 294.47778 * 17 16 14 38 38 H 1.08996 * 109.46938 * 54.47261 * 17 16 14 39 39 H 0.96700 * 113.99626 * 180.02562 * 18 17 16 40 40 H 1.08007 * 119.99953 * 359.97438 * 20 19 14 41 41 H 1.08001 * 119.99893 * 180.27287 * 21 20 19 42 42 H 1.07995 * 119.99563 * 179.83531 * 22 21 20 43 43 H 1.08003 * 119.99356 * 180.02562 * 23 22 21 44 44 H 1.08007 * 119.99520 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8692 1.9662 1.4039 5 6 2.4170 3.3949 1.4038 6 6 2.2920 3.9809 2.7865 7 1 1.8643 3.3934 3.5854 8 6 2.7238 5.2672 3.0317 9 7 3.2451 5.9824 2.0589 10 14 2.5682 5.9939 4.7454 11 1 3.3418 5.1667 5.7060 12 1 3.1000 7.3805 4.7453 13 1 1.1388 6.0125 5.1474 14 6 1.9954 -0.7661 -1.1375 15 1 2.9847 -0.3918 -1.4010 16 6 1.0560 -0.6113 -2.3352 17 6 1.0753 0.8418 -2.8140 18 8 0.2999 0.9600 -4.0085 19 6 2.0932 -2.2219 -0.7606 20 6 1.2912 -2.7312 0.2435 21 6 1.3777 -4.0676 0.5863 22 6 2.2727 -4.8927 -0.0690 23 6 3.0784 -4.3821 -1.0695 24 6 2.9888 -3.0467 -1.4151 25 1 -0.3633 -1.0166 -0.1501 26 1 -0.3634 0.6383 -0.8054 27 1 -0.3633 0.3784 0.9554 28 1 3.0444 1.3579 -0.2959 29 1 1.4271 1.9788 -0.7044 30 1 0.8202 1.9798 1.6998 31 1 2.4376 1.3588 2.1084 32 1 3.4659 3.3817 1.1078 33 1 1.8482 4.0020 0.6994 34 1 3.5485 6.8875 2.2313 35 1 1.3863 -1.2644 -3.1428 36 1 0.0426 -0.8829 -2.0395 37 1 0.6530 1.4846 -2.0416 38 1 2.1028 1.1440 -3.0164 39 1 0.2681 1.8565 -4.3696 40 1 0.5948 -2.0857 0.7581 41 1 0.7479 -4.4665 1.3678 42 1 2.3422 -5.9361 0.2007 43 1 3.7773 -5.0268 -1.5817 44 1 3.6180 -2.6480 -2.1972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075899519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -25.152786 kcal Electronic energy + Delta-G solvation = -21621.199058 eV Core-core repulsion = 18538.323104 eV Total energy + Delta-G solvation = -3082.875954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08589 -38.12438 -36.46992 -34.10860 -32.45958 -31.10972 -30.59742 -30.10870 -27.36275 -26.52461 -24.38154 -22.59097 -22.04932 -21.84266 -20.01227 -19.85055 -17.58084 -16.70833 -16.49436 -16.15948 -15.56099 -15.13216 -14.70010 -14.46629 -14.38274 -14.00323 -13.61962 -13.39964 -13.28711 -12.71552 -12.59402 -12.28525 -12.16253 -11.79911 -11.65374 -11.43954 -11.36488 -11.20266 -10.83806 -10.82385 -10.70398 -10.55367 -10.39361 -10.03410 -9.59019 -9.32566 -9.07961 -8.88930 -8.66109 -8.33380 -8.06451 -5.99092 -4.00870 1.36061 1.44161 3.34336 3.38361 3.41282 3.72842 4.04681 4.12423 4.47900 4.77886 4.83612 4.94868 5.00152 5.07455 5.15106 5.19102 5.32294 5.34555 5.36938 5.47971 5.55409 5.58995 5.66006 5.77829 5.84920 5.95363 5.99421 6.02496 6.07944 6.16478 6.32746 6.46644 6.54088 6.62073 6.69086 6.81536 7.02340 7.13419 7.30038 7.37267 7.49932 7.68969 7.83985 8.01377 8.45242 9.06108 9.63079 11.12365 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.003832 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.121315 B = 7305.230693 C = 8337.477886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.531 5.531 3 C 0.050 3.950 4 C -0.102 4.102 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.121 3.879 15 H 0.089 0.911 16 C -0.143 4.143 17 C 0.064 3.936 18 O -0.577 6.577 19 C -0.063 4.063 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.380 0.620 40 H 0.135 0.865 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -17.738 -9.693 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.254 5.254 3 C -0.077 4.077 4 C -0.140 4.140 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.012 3.988 15 H 0.107 0.893 16 C -0.182 4.182 17 C -0.013 4.013 18 O -0.383 6.383 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.227 0.773 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.621 -18.421 -9.187 20.900 hybrid contribution -0.111 1.493 0.135 1.504 sum -3.732 -16.927 -9.052 19.555 Atomic orbital electron populations 1.22715 0.87992 1.01148 1.01801 1.62181 1.07632 1.15140 1.40475 1.22597 0.99093 0.86194 0.99809 1.21604 1.00559 0.98518 0.93307 1.19070 0.96054 0.89462 0.96957 1.21216 1.40288 0.98517 0.95621 0.92731 1.25021 0.95326 0.97227 0.96899 1.69953 1.41847 1.10129 1.31774 0.86663 0.78411 0.78100 0.84862 1.20215 1.21330 1.20271 1.20634 0.98518 0.91045 0.88568 0.89343 1.22211 1.01749 0.95985 0.98226 1.22626 0.94626 0.97329 0.86708 1.86418 1.74187 1.34787 1.42909 1.19739 0.96062 0.94401 0.96188 1.21309 0.99134 0.94809 0.96462 1.21192 0.99051 0.94108 0.99935 1.21105 0.96886 0.99578 0.97041 1.21034 0.99669 0.95341 0.98142 1.20960 0.98794 0.93814 1.00121 0.91412 0.94836 0.90872 0.91457 0.94462 0.93505 0.92625 0.96713 0.96958 0.93010 0.90851 0.90261 0.92262 0.93538 0.77309 0.84718 0.86366 0.86581 0.86427 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 6.93 60.07 0.42 0.56 16 2 N -0.53 -7.53 3.93 -236.29 -0.93 -8.46 16 3 C 0.05 0.82 4.27 -3.83 -0.02 0.81 16 4 C -0.10 -2.09 5.28 -26.73 -0.14 -2.23 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.12 1.51 2.17 -68.86 -0.15 1.36 16 15 H 0.09 1.11 7.36 -51.93 -0.38 0.73 16 16 C -0.14 -1.68 4.51 -26.73 -0.12 -1.80 16 17 C 0.06 0.77 5.83 37.16 0.22 0.99 16 18 O -0.58 -6.86 13.66 -35.23 -0.48 -7.34 16 19 C -0.06 -0.78 5.06 -104.63 -0.53 -1.31 16 20 C -0.10 -1.22 8.66 -39.58 -0.34 -1.56 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 24 C -0.12 -1.33 9.72 -39.59 -0.38 -1.71 16 25 H 0.07 0.77 5.19 -51.93 -0.27 0.50 16 26 H 0.03 0.43 5.30 -51.93 -0.28 0.15 16 27 H 0.07 0.98 7.25 -51.93 -0.38 0.61 16 28 H 0.07 1.12 7.49 -51.93 -0.39 0.73 16 29 H 0.04 0.60 5.29 -51.93 -0.27 0.33 16 30 H 0.05 0.95 7.16 -51.93 -0.37 0.58 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.96 5.91 -51.93 -0.31 0.65 16 37 H 0.06 0.76 3.94 -51.93 -0.20 0.56 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.38 2.97 9.12 45.56 0.42 3.38 16 40 H 0.14 1.65 5.05 -52.48 -0.27 1.39 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -31.58 341.89 -9.38 -40.96 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.05 Total: 2.34 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.79 Total: -23.15 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.19 Total: -34.71 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.48 Total: -7.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.58 -9.38 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.809 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds