Wall clock time and date at job start Mon Mar 30 2020 02:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00115 * 2 1 4 4 C 1.52992 * 109.47093 * 76.73211 * 3 2 1 5 5 C 1.53008 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47040 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00584 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99749 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47317 * 60.00533 * 10 8 6 12 12 H 1.48508 * 109.47153 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47346 * 300.00218 * 10 8 6 14 14 C 1.46898 * 110.99941 * 236.04162 * 2 1 3 15 15 H 1.09001 * 109.47103 * 153.55662 * 14 2 1 16 16 C 1.53002 * 109.47334 * 33.55950 * 14 2 1 17 17 C 1.53007 * 109.47030 * 66.14259 * 16 14 2 18 18 O 1.42898 * 109.46960 * 174.47593 * 17 16 14 19 19 C 1.50701 * 109.47270 * 273.55520 * 14 2 1 20 20 C 1.38233 * 119.99836 * 24.17384 * 19 14 2 21 21 C 1.38239 * 120.00064 * 179.78880 * 20 19 14 22 22 C 1.38240 * 119.99599 * 0.43067 * 21 20 19 23 23 C 1.38235 * 119.99828 * 359.82077 * 22 21 20 24 24 C 1.38228 * 120.00170 * 359.97288 * 23 22 21 25 25 H 1.08992 * 109.47335 * 171.60310 * 1 2 3 26 26 H 1.09003 * 109.47191 * 51.60229 * 1 2 3 27 27 H 1.08998 * 109.46928 * 291.60780 * 1 2 3 28 28 H 1.08996 * 109.46902 * 196.73255 * 3 2 1 29 29 H 1.09004 * 109.46897 * 316.73162 * 3 2 1 30 30 H 1.09005 * 109.47486 * 299.99803 * 4 3 2 31 31 H 1.09003 * 109.47689 * 59.99838 * 4 3 2 32 32 H 1.08996 * 109.46781 * 299.99981 * 5 4 3 33 33 H 1.09004 * 109.47000 * 59.99877 * 5 4 3 34 34 H 0.97005 * 119.99797 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.47424 * 186.14693 * 16 14 2 36 36 H 1.09003 * 109.46601 * 306.14719 * 16 14 2 37 37 H 1.09003 * 109.46983 * 294.47778 * 17 16 14 38 38 H 1.08996 * 109.46938 * 54.47261 * 17 16 14 39 39 H 0.96700 * 113.99626 * 180.02562 * 18 17 16 40 40 H 1.08007 * 119.99953 * 359.97438 * 20 19 14 41 41 H 1.08001 * 119.99893 * 180.27287 * 21 20 19 42 42 H 1.07995 * 119.99563 * 179.83531 * 22 21 20 43 43 H 1.08003 * 119.99356 * 180.02562 * 23 22 21 44 44 H 1.08007 * 119.99520 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8692 1.9662 1.4039 5 6 2.4170 3.3949 1.4038 6 6 2.2920 3.9809 2.7865 7 1 1.8643 3.3934 3.5854 8 6 2.7238 5.2672 3.0317 9 7 3.2451 5.9824 2.0589 10 14 2.5682 5.9939 4.7454 11 1 3.3418 5.1667 5.7060 12 1 3.1000 7.3805 4.7453 13 1 1.1388 6.0125 5.1474 14 6 1.9954 -0.7661 -1.1375 15 1 2.9847 -0.3918 -1.4010 16 6 1.0560 -0.6113 -2.3352 17 6 1.0753 0.8418 -2.8140 18 8 0.2999 0.9600 -4.0085 19 6 2.0932 -2.2219 -0.7606 20 6 1.2912 -2.7312 0.2435 21 6 1.3777 -4.0676 0.5863 22 6 2.2727 -4.8927 -0.0690 23 6 3.0784 -4.3821 -1.0695 24 6 2.9888 -3.0467 -1.4151 25 1 -0.3633 -1.0166 -0.1501 26 1 -0.3634 0.6383 -0.8054 27 1 -0.3633 0.3784 0.9554 28 1 3.0444 1.3579 -0.2959 29 1 1.4271 1.9788 -0.7044 30 1 0.8202 1.9798 1.6998 31 1 2.4376 1.3588 2.1084 32 1 3.4659 3.3817 1.1078 33 1 1.8482 4.0020 0.6994 34 1 3.5485 6.8875 2.2313 35 1 1.3863 -1.2644 -3.1428 36 1 0.0426 -0.8829 -2.0395 37 1 0.6530 1.4846 -2.0416 38 1 2.1028 1.1440 -3.0164 39 1 0.2681 1.8565 -4.3696 40 1 0.5948 -2.0857 0.7581 41 1 0.7479 -4.4665 1.3678 42 1 2.3422 -5.9361 0.2007 43 1 3.7773 -5.0268 -1.5817 44 1 3.6180 -2.6480 -2.1972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075899519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:56 Heat of formation + Delta-G solvation = -45.254738 kcal Electronic energy + Delta-G solvation = -21622.070744 eV Core-core repulsion = 18538.323104 eV Total energy + Delta-G solvation = -3083.747640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05597 -39.06354 -37.47999 -35.90338 -34.09063 -32.33646 -31.60667 -31.11683 -28.82292 -27.77186 -25.90838 -23.71037 -23.18807 -22.91066 -21.57101 -20.90133 -18.59998 -18.38537 -17.55837 -17.41847 -16.62589 -16.49476 -16.11993 -15.81648 -15.34520 -15.00919 -14.76126 -14.64294 -14.35725 -14.07634 -13.81191 -13.64688 -13.51663 -13.03055 -12.87458 -12.77643 -12.64703 -12.44099 -12.41542 -12.28972 -12.20823 -11.68783 -11.57999 -11.42294 -11.33832 -11.02588 -10.92897 -10.53515 -9.71833 -9.52226 -9.21103 -8.19532 -6.29982 0.52475 0.61053 1.40089 1.42952 1.50833 2.41248 2.83108 2.98643 3.13662 3.24755 3.84235 3.84974 4.11194 4.13989 4.17113 4.22944 4.25331 4.29565 4.37178 4.43861 4.55429 4.57928 4.67453 4.75587 4.81027 4.83151 4.88447 4.92977 5.04568 5.09830 5.16135 5.18790 5.27393 5.28727 5.53681 5.65498 5.71900 5.75750 5.77431 5.87733 6.10877 6.17445 6.23027 6.30313 6.76179 6.86558 7.39013 8.92028 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.003832 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.121315 B = 7305.230693 C = 8337.477886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.062 3.938 4 C -0.086 4.086 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.127 3.873 15 H 0.086 0.914 16 C -0.134 4.134 17 C 0.067 3.933 18 O -0.589 6.589 19 C -0.079 4.079 20 C -0.117 4.117 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.047 0.953 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.396 0.604 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 -19.160 -9.411 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.258 5.258 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.018 3.982 15 H 0.104 0.896 16 C -0.173 4.173 17 C -0.011 4.011 18 O -0.398 6.398 19 C -0.079 4.079 20 C -0.135 4.135 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.147 4.147 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.853 -19.851 -8.915 22.099 hybrid contribution -0.035 1.890 0.002 1.891 sum -3.889 -17.961 -8.913 20.424 Atomic orbital electron populations 1.22717 0.87120 1.02155 1.01366 1.62068 1.08445 1.13474 1.41850 1.22312 0.99339 0.87709 0.97147 1.21340 0.99897 0.95436 0.95767 1.18962 0.94495 0.92232 0.95374 1.21666 1.40449 0.99173 0.96827 0.92490 1.25948 0.94759 0.97687 1.01297 1.70080 1.42597 1.10547 1.34087 0.85540 0.78898 0.77315 0.79548 1.19304 1.20742 1.19190 1.20587 0.98376 0.91137 0.88068 0.89573 1.22116 1.01338 0.95905 0.97956 1.22556 0.94717 0.97226 0.86571 1.86377 1.74142 1.36500 1.42732 1.19775 0.97014 0.94187 0.96971 1.21380 0.99600 0.95588 0.96941 1.21447 0.99495 0.93747 1.00404 1.21450 0.96183 1.00722 0.96555 1.21373 0.99822 0.95267 0.98044 1.21185 0.98714 0.94331 1.00439 0.89799 0.94743 0.91679 0.91662 0.94068 0.93369 0.93453 0.99052 0.98974 0.92783 0.90420 0.90538 0.93357 0.93220 0.75403 0.85300 0.84804 0.84216 0.84116 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 6.93 127.69 0.88 1.23 16 2 N -0.54 -15.01 3.93 -901.48 -3.54 -18.55 16 3 C 0.06 2.08 4.27 86.30 0.37 2.44 16 4 C -0.09 -3.60 5.28 30.59 0.16 -3.44 16 5 C 0.03 1.43 4.97 29.85 0.15 1.58 16 6 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 8 C 0.00 0.05 5.46 84.66 0.46 0.51 16 9 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 10 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.13 3.08 2.17 44.17 0.10 3.18 16 15 H 0.09 2.12 7.36 -2.39 -0.02 2.10 16 16 C -0.13 -3.04 4.51 30.60 0.14 -2.90 16 17 C 0.07 1.55 5.83 71.98 0.42 1.97 16 18 O -0.59 -13.36 13.66 -148.98 -2.03 -15.40 16 19 C -0.08 -1.87 5.06 -19.87 -0.10 -1.97 16 20 C -0.12 -2.76 8.66 22.27 0.19 -2.57 16 21 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 22 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 23 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.13 -2.67 9.72 22.27 0.22 -2.45 16 25 H 0.08 1.84 5.19 -2.39 -0.01 1.83 16 26 H 0.03 0.86 5.30 -2.39 -0.01 0.85 16 27 H 0.06 1.73 7.25 -2.39 -0.02 1.72 16 28 H 0.06 2.19 7.49 -2.39 -0.02 2.18 16 29 H 0.04 1.35 5.29 -2.38 -0.01 1.34 16 30 H 0.05 1.97 7.16 -2.38 -0.02 1.95 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 34 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.77 5.91 -2.39 -0.01 1.76 16 37 H 0.05 1.23 3.94 -2.39 -0.01 1.22 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.40 5.78 9.12 -74.06 -0.68 5.10 16 40 H 0.13 3.09 5.05 -2.91 -0.01 3.07 16 41 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.18 341.89 0.95 -66.23 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.32 Total: 17.97 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 3.89 Total: -40.24 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -3.25 Total: -75.18 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -2.03 Total: -15.40 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.18 0.95 -66.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.978 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds