Wall clock time and date at job start Mon Mar 30 2020 02:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46902 * 109.46559 * 2 1 4 4 C 1.46901 * 111.00370 * 299.00144 * 3 2 1 5 5 C 1.53001 * 109.47063 * 288.47421 * 4 3 2 6 6 C 1.50695 * 109.47201 * 185.31237 * 5 4 3 7 7 H 1.08000 * 119.99904 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00532 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99628 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00301 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47448 * 60.00014 * 10 8 6 12 12 H 1.48503 * 109.47233 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47296 * 299.99678 * 10 8 6 14 14 C 1.46894 * 111.00142 * 62.96081 * 3 2 1 15 15 C 1.53000 * 109.47340 * 77.05632 * 14 3 2 16 16 H 1.08996 * 109.47268 * 53.03149 * 15 14 3 17 17 O 1.42905 * 109.46944 * 293.03333 * 15 14 3 18 18 C 1.50707 * 109.47129 * 173.03724 * 15 14 3 19 19 C 1.38235 * 120.00295 * 84.72408 * 18 15 14 20 20 C 1.38232 * 119.99843 * 179.76799 * 19 18 15 21 21 C 1.38233 * 120.00152 * 0.50283 * 20 19 18 22 22 C 1.50694 * 120.00150 * 179.72413 * 21 20 19 23 23 C 1.38239 * 119.99772 * 359.75275 * 21 20 19 24 24 C 1.38229 * 120.00307 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46888 * 304.56553 * 1 2 3 26 26 H 1.09002 * 109.46776 * 64.56446 * 1 2 3 27 27 H 1.08999 * 109.46793 * 184.56491 * 1 2 3 28 28 H 1.08994 * 109.47077 * 240.00648 * 2 1 3 29 29 H 1.08995 * 109.47163 * 120.00068 * 2 1 3 30 30 H 1.08997 * 109.46900 * 48.47428 * 4 3 2 31 31 H 1.08994 * 109.47053 * 168.47771 * 4 3 2 32 32 H 1.08995 * 109.47308 * 305.31676 * 5 4 3 33 33 H 1.09003 * 109.47162 * 65.31721 * 5 4 3 34 34 H 0.97001 * 120.00091 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47399 * 317.05052 * 14 3 2 36 36 H 1.09011 * 109.47177 * 197.05518 * 14 3 2 37 37 H 0.96706 * 113.99768 * 300.00454 * 17 15 14 38 38 H 1.08001 * 119.99810 * 359.97438 * 19 18 15 39 39 H 1.08000 * 119.99787 * 180.23406 * 20 19 18 40 40 H 1.08996 * 109.47781 * 270.02335 * 22 21 20 41 41 H 1.08998 * 109.47254 * 30.02748 * 22 21 20 42 42 H 1.09003 * 109.47149 * 150.02170 * 22 21 20 43 43 H 1.08003 * 119.99916 * 179.97438 * 23 21 20 44 44 H 1.08001 * 120.00314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5682 2.1031 -1.1994 5 6 2.3226 1.5777 -2.4225 6 6 1.9562 2.4008 -3.6305 7 1 1.2557 3.2172 -3.5353 8 6 2.5152 2.1116 -4.8572 9 7 3.3679 1.1171 -4.9732 10 14 2.0616 3.1323 -6.3543 11 1 2.4315 4.5508 -6.1170 12 1 2.7927 2.6216 -7.5417 13 1 0.5994 3.0357 -6.5948 14 6 1.6073 2.0892 1.2215 15 6 2.4945 1.6495 2.3878 16 1 3.5423 1.7744 2.1145 17 8 2.2410 0.2755 2.6876 18 6 2.1871 2.4927 3.5985 19 6 1.1393 2.1492 4.4322 20 6 0.8605 2.9200 5.5453 21 6 1.6228 4.0401 5.8190 22 6 1.3148 4.8839 7.0290 23 6 2.6673 4.3866 4.9823 24 6 2.9497 3.6128 3.8724 25 1 -0.3633 0.5831 0.8463 26 1 -0.3633 0.4414 -0.9281 27 1 -0.3633 -1.0244 0.0818 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.4986 1.9446 -1.3366 31 1 1.7655 3.1684 -1.0809 32 1 3.3958 1.6494 -2.2459 33 1 2.0518 0.5363 -2.5967 34 1 3.7615 0.9138 -5.8361 35 1 0.5677 1.8499 1.4454 36 1 1.7087 3.1643 1.0729 37 1 1.3259 0.0902 2.9394 38 1 0.5407 1.2767 4.2157 39 1 0.0442 2.6494 6.1987 40 1 0.5997 5.6606 6.7580 41 1 0.8896 4.2555 7.8115 42 1 2.2326 5.3460 7.3929 43 1 3.2626 5.2621 5.1959 44 1 3.7655 3.8837 3.2185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076015787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:11 Heat of formation + Delta-G solvation = -54.252654 kcal Electronic energy + Delta-G solvation = -21432.185752 eV Core-core repulsion = 18348.047933 eV Total energy + Delta-G solvation = -3084.137819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87375 -39.39876 -37.39597 -35.16926 -33.88420 -32.10172 -31.83576 -31.43155 -29.21904 -27.19311 -25.92418 -24.58616 -23.62696 -23.02372 -21.48936 -20.72323 -18.67580 -18.22294 -17.35617 -16.60407 -16.42794 -16.37633 -16.22813 -15.84902 -15.19950 -14.84070 -14.62076 -14.53181 -14.26284 -14.18497 -13.90526 -13.76809 -13.25094 -13.10708 -12.97913 -12.83466 -12.63203 -12.56249 -12.49571 -12.42462 -12.01759 -11.92490 -11.78840 -11.55468 -11.52257 -11.27545 -10.65281 -10.50862 -9.82749 -9.42719 -9.01997 -8.19406 -6.31256 0.37467 0.50232 1.39061 1.42692 1.50601 2.40001 2.76643 3.09540 3.13471 3.52170 3.82790 3.90721 4.03884 4.11368 4.13796 4.20259 4.26469 4.38186 4.48017 4.55337 4.58378 4.60119 4.61453 4.73550 4.83047 4.85104 4.92391 4.98851 5.06736 5.14019 5.19177 5.20773 5.28511 5.40462 5.49382 5.51354 5.67931 5.69390 5.71045 5.81178 6.11676 6.15151 6.35261 6.39295 6.78177 6.86510 7.37758 8.92623 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.003316 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.653879 B = 8442.058504 C = 9015.589065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.040 3.960 3 N -0.545 5.545 4 C 0.075 3.925 5 C 0.042 3.958 6 C -0.546 4.546 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.967 3.033 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.030 3.970 15 C 0.166 3.834 16 H 0.095 0.905 17 O -0.556 6.556 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.109 0.891 30 H 0.029 0.971 31 H 0.056 0.944 32 H -0.012 1.012 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.381 0.619 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.137 0.863 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 4.376 24.323 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.087 4.087 3 N -0.268 5.268 4 C -0.053 4.053 5 C 0.004 3.996 6 C -0.584 4.584 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.098 4.098 15 C 0.106 3.894 16 H 0.113 0.887 17 O -0.364 6.364 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.169 4.169 23 C -0.147 4.147 24 C -0.139 4.139 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.154 0.846 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.618 4.221 24.051 25.056 hybrid contribution -1.204 0.377 -1.234 1.765 sum -6.823 4.598 22.817 24.255 Atomic orbital electron populations 1.22322 0.97523 1.02885 1.01305 1.22402 0.93563 0.89833 1.02923 1.62124 1.60239 1.02906 1.01546 1.22055 0.96686 0.96765 0.89766 1.18836 0.94352 0.94664 0.91738 1.21617 1.26183 1.16081 0.94531 0.92222 1.25987 0.94818 0.96470 1.02477 1.70117 1.30791 1.30690 1.25618 0.85483 0.78640 0.78975 0.77829 1.19076 1.20791 1.19117 1.22839 0.97917 0.98689 0.90339 1.20627 0.99689 0.80042 0.89015 0.88726 1.86616 1.34622 1.25166 1.89988 1.20519 0.97421 0.97244 0.97661 1.21099 0.96803 1.00355 0.94974 1.21290 1.00304 0.95070 0.97712 1.20315 0.95384 0.96347 0.97643 1.20833 1.02792 0.99099 0.94199 1.21275 0.98299 1.00281 0.94815 1.21196 0.99804 0.94957 0.97927 0.91149 0.94536 0.90691 0.94038 0.87346 0.95247 0.92554 0.99339 0.99331 0.92776 0.92564 0.90951 0.76965 0.84553 0.83987 0.90474 0.90501 0.90848 0.84556 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.16 9.29 71.99 0.67 -4.49 16 2 C 0.04 1.37 5.70 86.31 0.49 1.86 16 3 N -0.54 -20.07 4.59 -896.23 -4.11 -24.18 16 4 C 0.07 3.26 4.75 86.30 0.41 3.67 16 5 C 0.04 2.31 4.90 29.85 0.15 2.46 16 6 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 10 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.03 0.86 4.66 86.30 0.40 1.26 16 15 C 0.17 4.21 3.43 29.85 0.10 4.32 16 16 H 0.09 2.78 8.05 -2.39 -0.02 2.76 16 17 O -0.56 -13.44 10.34 -148.98 -1.54 -14.99 16 18 C -0.13 -2.82 5.00 -19.86 -0.10 -2.92 16 19 C -0.11 -2.11 9.33 22.27 0.21 -1.90 16 20 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 21 C -0.10 -1.61 5.88 -19.87 -0.12 -1.73 16 22 C -0.11 -1.22 10.01 71.23 0.71 -0.50 16 23 C -0.13 -2.39 9.70 22.27 0.22 -2.18 16 24 C -0.12 -2.62 9.68 22.27 0.22 -2.41 16 25 H 0.07 1.66 5.98 -2.39 -0.01 1.65 16 26 H 0.04 1.21 6.43 -2.39 -0.02 1.20 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.70 6.76 -2.39 -0.02 1.68 16 29 H 0.11 3.29 5.41 -2.39 -0.01 3.28 16 30 H 0.03 1.25 5.90 -2.39 -0.01 1.24 16 31 H 0.06 2.43 7.68 -2.39 -0.02 2.41 16 32 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H -0.01 -0.70 6.95 -2.39 -0.02 -0.72 16 34 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.06 1.41 5.68 -2.39 -0.01 1.39 16 36 H 0.07 2.12 7.62 -2.38 -0.02 2.10 16 37 H 0.38 6.38 7.40 -74.05 -0.55 5.84 16 38 H 0.14 1.89 6.62 -2.91 -0.02 1.87 16 39 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 42 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -69.84 346.98 1.36 -68.48 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.43 Total: 17.47 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.27 Total: -35.74 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.83 Total: -82.35 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.54 Total: -14.99 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.84 1.36 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076015787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.226 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds