Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.47016 * 2 1 4 4 C 1.46896 * 110.99686 * 68.53746 * 3 2 1 5 5 C 1.52996 * 109.47361 * 72.10814 * 4 3 2 6 6 C 1.50703 * 109.46992 * 184.35760 * 5 4 3 7 7 H 1.07999 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99830 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00024 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00198 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46987 * 89.99647 * 10 8 6 12 12 H 1.48493 * 109.47376 * 210.00020 * 10 8 6 13 13 H 1.48506 * 109.46938 * 330.00129 * 10 8 6 14 14 C 1.46902 * 110.99987 * 304.58384 * 3 2 1 15 15 C 1.53008 * 109.46745 * 287.07988 * 14 3 2 16 16 H 1.08994 * 109.47532 * 304.13416 * 15 14 3 17 17 O 1.42906 * 109.46860 * 64.13543 * 15 14 3 18 18 C 1.50697 * 109.46871 * 184.13337 * 15 14 3 19 19 C 1.38232 * 120.00206 * 99.99974 * 18 15 14 20 20 C 1.38233 * 120.00211 * 179.97438 * 19 18 15 21 21 C 1.38232 * 120.00285 * 359.97438 * 20 19 18 22 22 C 1.50692 * 120.00331 * 179.97438 * 21 20 19 23 23 C 1.38242 * 119.99541 * 359.97438 * 21 20 19 24 24 C 1.38231 * 120.00432 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46968 * 305.16931 * 1 2 3 26 26 H 1.09000 * 109.47227 * 65.17127 * 1 2 3 27 27 H 1.09005 * 109.46864 * 185.17067 * 1 2 3 28 28 H 1.09002 * 109.47481 * 240.00187 * 2 1 3 29 29 H 1.09001 * 109.47483 * 120.00006 * 2 1 3 30 30 H 1.09006 * 109.46875 * 192.10773 * 4 3 2 31 31 H 1.09002 * 109.47231 * 312.10034 * 4 3 2 32 32 H 1.09002 * 109.47182 * 304.35065 * 5 4 3 33 33 H 1.08994 * 109.47478 * 64.35641 * 5 4 3 34 34 H 0.96996 * 119.99884 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46789 * 167.08757 * 14 3 2 36 36 H 1.08991 * 109.47398 * 47.07820 * 14 3 2 37 37 H 0.96699 * 114.00028 * 59.99932 * 17 15 14 38 38 H 1.08005 * 119.99709 * 0.26097 * 19 18 15 39 39 H 1.07996 * 119.99948 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47674 * 90.00092 * 22 21 20 41 41 H 1.09009 * 109.47109 * 210.00006 * 22 21 20 42 42 H 1.08994 * 109.47470 * 330.00035 * 22 21 20 43 43 H 1.08005 * 119.99611 * 179.97438 * 23 21 20 44 44 H 1.07996 * 120.00678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7220 2.0486 1.2763 5 6 2.6304 1.4824 2.3695 6 6 2.2529 2.0850 3.6982 7 1 1.4461 2.8006 3.7570 8 6 2.9377 1.7228 4.8389 9 7 2.6086 2.2491 5.9984 10 14 4.3327 0.4847 4.7374 11 1 5.6119 1.1991 4.4954 12 1 4.4201 -0.2684 6.0142 13 1 4.0751 -0.4609 3.6216 14 6 1.4612 2.1409 -1.1291 15 6 2.1246 1.6806 -2.4288 16 1 3.2059 1.7873 -2.3424 17 8 1.7989 0.3103 -2.6705 18 6 1.6264 2.5248 -3.5734 19 6 2.3984 3.5674 -4.0505 20 6 1.9417 4.3415 -5.1007 21 6 0.7130 4.0726 -5.6743 22 6 0.2148 4.9167 -6.8189 23 6 -0.0586 3.0292 -5.1979 24 6 0.3986 2.2544 -4.1483 25 1 -0.3633 0.5920 0.8401 26 1 -0.3634 0.4315 -0.9327 27 1 -0.3633 -1.0235 0.0926 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8961 3.1201 1.1780 31 1 0.6798 1.8729 1.5428 32 1 2.5127 0.3997 2.4151 33 1 3.6681 1.7259 2.1418 34 1 3.0901 1.9940 6.8009 35 1 1.6486 3.2046 -0.9824 36 1 0.3870 1.9658 -1.1877 37 1 0.8510 0.1409 -2.7585 38 1 3.3606 3.7744 -3.6056 39 1 2.5447 5.1563 -5.4732 40 1 0.5458 4.4820 -7.7621 41 1 -0.8745 4.9516 -6.7974 42 1 0.6126 5.9271 -6.7252 43 1 -1.0187 2.8193 -5.6458 44 1 -0.2044 1.4396 -3.7758 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076015789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = -30.499071 kcal Electronic energy + Delta-G solvation = -21529.253938 eV Core-core repulsion = 18446.146152 eV Total energy + Delta-G solvation = -3083.107786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05949 -38.36888 -36.21994 -33.16727 -32.99763 -31.13075 -30.66106 -30.37364 -28.21289 -26.11276 -24.30746 -23.49412 -22.81963 -21.35753 -20.57619 -19.20202 -17.52257 -16.77936 -16.31000 -15.54079 -15.40681 -15.29976 -14.89122 -14.27065 -14.14146 -13.94174 -13.63247 -13.60077 -13.31466 -12.75816 -12.57315 -12.48463 -12.36133 -12.31563 -11.86976 -11.69305 -11.51213 -11.30078 -11.09990 -10.98483 -10.86309 -10.69799 -10.11496 -9.95827 -9.69792 -9.38274 -9.16333 -9.11693 -8.68528 -8.49266 -7.71474 -6.01484 -3.99259 1.10147 1.21152 3.35856 3.42560 3.48848 3.50736 4.22724 4.41439 4.49691 4.57581 4.63155 4.79729 4.86106 5.00654 5.15753 5.24043 5.27578 5.30255 5.33194 5.45544 5.47499 5.50852 5.58944 5.76753 5.78364 5.79905 5.87078 5.95530 6.08800 6.15040 6.20778 6.31924 6.37622 6.45720 6.49046 6.71429 6.80186 6.84481 7.21781 7.39257 7.54591 7.66145 7.70690 7.90323 8.56467 9.02715 9.61530 11.11941 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.003386 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.951797 B = 8266.238244 C = 8548.921008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 N -0.533 5.533 4 C 0.065 3.935 5 C -0.005 4.005 6 C -0.520 4.520 7 H 0.069 0.931 8 C 0.067 3.933 9 N -0.906 5.906 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.264 1.264 14 C 0.024 3.976 15 C 0.153 3.847 16 H 0.114 0.886 17 O -0.546 6.546 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.091 4.091 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.366 0.634 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 0.990 -25.182 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.093 4.093 3 N -0.256 5.256 4 C -0.061 4.061 5 C -0.042 4.042 6 C -0.559 4.559 7 H 0.087 0.913 8 C -0.134 4.134 9 N -0.545 5.545 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.189 1.189 14 C -0.105 4.105 15 C 0.094 3.906 16 H 0.132 0.868 17 O -0.352 6.352 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.091 4.091 22 C -0.171 4.171 23 C -0.137 4.137 24 C -0.127 4.127 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.214 0.786 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.138 0.862 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.807 0.920 -25.001 25.305 hybrid contribution -0.838 -0.359 0.285 0.955 sum -4.645 0.561 -24.715 25.154 Atomic orbital electron populations 1.22412 0.99358 1.01843 1.01187 1.22506 0.92110 0.90787 1.03939 1.62249 1.58267 1.02230 1.02834 1.22208 0.98551 0.97607 0.87769 1.19529 0.95260 0.96311 0.93133 1.21111 1.18628 1.25800 0.90354 0.91269 1.24999 0.97099 0.96059 0.95259 1.69920 1.41762 1.44058 0.98733 0.86746 0.82861 0.82123 0.77387 1.20270 1.21571 1.18851 1.22811 0.97121 0.98956 0.91597 1.20920 1.00662 0.79728 0.89298 0.86830 1.86646 1.28905 1.25419 1.94205 1.20631 0.95140 0.97435 0.98277 1.21040 0.99775 0.94940 0.96401 1.21032 0.95858 1.00027 0.96783 1.19930 0.94862 0.96675 0.97674 1.20787 1.01327 0.98885 0.96073 1.20972 0.99789 0.95694 0.97252 1.20849 0.95556 0.99588 0.96677 0.92193 0.93526 0.92540 0.88602 0.90673 0.92075 0.95018 0.96492 0.96384 0.92784 0.90359 0.94064 0.78627 0.85639 0.86036 0.91261 0.91609 0.91553 0.86167 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 9.16 37.16 0.34 -2.26 16 2 C 0.03 0.54 5.49 -3.82 -0.02 0.52 16 3 N -0.53 -9.10 4.62 -234.62 -1.08 -10.18 16 4 C 0.07 1.33 4.81 -3.83 -0.02 1.32 16 5 C 0.00 -0.11 4.17 -27.88 -0.12 -0.23 16 6 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 10 Si 0.88 22.29 27.47 -169.99 -4.67 17.63 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.26 -6.46 6.54 56.52 0.37 -6.10 16 14 C 0.02 0.33 4.56 -3.82 -0.02 0.31 16 15 C 0.15 1.86 3.43 -27.88 -0.10 1.77 16 16 H 0.11 1.49 8.00 -51.93 -0.42 1.08 16 17 O -0.55 -6.59 10.11 -35.23 -0.36 -6.95 16 18 C -0.11 -1.25 4.97 -104.62 -0.52 -1.77 16 19 C -0.10 -1.09 9.67 -39.59 -0.38 -1.47 16 20 C -0.12 -1.13 9.70 -39.59 -0.38 -1.52 16 21 C -0.09 -0.83 5.88 -104.63 -0.62 -1.45 16 22 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 23 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 24 C -0.11 -1.08 9.32 -39.58 -0.37 -1.45 16 25 H 0.06 0.95 6.25 -51.93 -0.32 0.62 16 26 H 0.05 0.54 5.66 -51.93 -0.29 0.25 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 1.42 5.52 -51.93 -0.29 1.13 16 29 H 0.07 1.36 6.38 -51.93 -0.33 1.03 16 30 H 0.06 1.25 7.71 -51.93 -0.40 0.85 16 31 H 0.03 0.66 6.08 -51.93 -0.32 0.34 16 32 H 0.02 0.42 5.54 -51.93 -0.29 0.13 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 36 H 0.04 0.54 5.67 -51.93 -0.29 0.25 16 37 H 0.37 3.41 6.79 45.56 0.31 3.72 16 38 H 0.13 1.18 8.04 -52.48 -0.42 0.76 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 42 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.96 6.78 -52.49 -0.36 0.61 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -32.07 341.49 -9.17 -41.25 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.33 Total: 2.27 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.65 Total: -21.61 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.31 Total: -37.73 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.36 Total: -6.95 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.07 -9.17 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076015789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.747 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds