Wall clock time and date at job start Mon Mar 30 2020 02:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46759 * 2 1 4 4 C 1.46896 * 111.00425 * 62.59964 * 3 2 1 5 5 C 1.50701 * 109.47223 * 71.21470 * 4 3 2 6 6 H 1.07994 * 120.00020 * 5.04392 * 5 4 3 7 7 C 1.37876 * 119.99933 * 185.04150 * 5 4 3 8 8 N 1.31514 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00271 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47288 * 89.99739 * 9 7 5 11 11 H 1.48498 * 109.47323 * 210.00481 * 9 7 5 12 12 H 1.48505 * 109.46793 * 329.99927 * 9 7 5 13 13 C 1.46900 * 111.00042 * 298.63839 * 3 2 1 14 14 C 1.50705 * 109.47181 * 287.43134 * 13 3 2 15 15 C 1.38158 * 120.02766 * 265.03694 * 14 13 3 16 16 C 1.38244 * 120.05626 * 179.97438 * 15 14 13 17 17 C 1.38284 * 120.11161 * 359.97438 * 16 15 14 18 18 C 1.38128 * 120.05609 * 0.02562 * 17 16 15 19 19 C 1.38711 * 120.02843 * 85.01825 * 14 13 3 20 20 O 1.35909 * 120.05571 * 359.97438 * 19 14 13 21 21 C 1.42891 * 117.00170 * 176.23214 * 20 19 14 22 22 C 1.53000 * 109.47198 * 156.69291 * 21 20 19 23 23 C 1.53006 * 109.47523 * 276.69699 * 21 20 19 24 24 H 1.09002 * 109.47401 * 184.10869 * 1 2 3 25 25 H 1.08997 * 109.47487 * 304.11595 * 1 2 3 26 26 H 1.09002 * 109.46754 * 64.11400 * 1 2 3 27 27 H 1.08998 * 109.47189 * 239.99436 * 2 1 3 28 28 H 1.09005 * 109.46387 * 119.99257 * 2 1 3 29 29 H 1.09001 * 109.46893 * 191.21879 * 4 3 2 30 30 H 1.08999 * 109.46975 * 311.21327 * 4 3 2 31 31 H 0.97004 * 120.00426 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47043 * 167.43066 * 13 3 2 33 33 H 1.09002 * 109.46747 * 47.43299 * 13 3 2 34 34 H 1.08003 * 119.97628 * 0.02562 * 15 14 13 35 35 H 1.08004 * 119.94153 * 180.02562 * 16 15 14 36 36 H 1.08005 * 119.97431 * 180.27919 * 17 16 15 37 37 H 1.08000 * 120.02935 * 180.02562 * 18 17 16 38 38 H 1.09008 * 109.46841 * 36.69357 * 21 20 19 39 39 H 1.08997 * 109.46789 * 60.00487 * 22 21 20 40 40 H 1.09000 * 109.47152 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47059 * 300.00284 * 22 21 20 42 42 H 1.09000 * 109.47279 * 179.97438 * 23 21 20 43 43 H 1.08998 * 109.46421 * 300.00060 * 23 21 20 44 44 H 1.08999 * 109.46671 * 59.99644 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6001 2.0918 1.2175 5 6 2.3690 1.5579 2.3985 6 1 3.1533 0.8309 2.2482 7 6 2.0712 1.9977 3.6709 8 7 1.1158 2.8827 3.8539 9 14 3.0248 1.3365 5.1348 10 1 4.2097 2.1965 5.3830 11 1 2.1516 1.3380 6.3359 12 1 3.4712 -0.0507 4.8490 13 6 1.5753 2.1004 -1.2036 14 6 2.3438 1.5983 -2.3989 15 6 3.4777 2.2648 -2.8216 16 6 4.1834 1.8044 -3.9176 17 6 3.7568 0.6757 -4.5932 18 6 2.6238 0.0058 -4.1745 19 6 1.9134 0.4663 -3.0752 20 8 0.7988 -0.1917 -2.6608 21 6 0.3674 -1.2998 -3.4530 22 6 -0.4788 -2.2419 -2.5943 23 6 -0.4695 -0.7914 -4.6287 24 1 -0.3634 -1.0250 0.0736 25 1 -0.3634 0.5764 0.8508 26 1 -0.3633 0.4487 -0.9246 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7993 3.1576 1.1058 30 1 0.5332 1.9366 1.3783 31 1 0.9060 3.1919 4.7491 32 1 1.7549 3.1683 -1.0787 33 1 0.5103 1.9266 -1.3572 34 1 3.8137 3.1458 -2.2949 35 1 5.0698 2.3266 -4.2462 36 1 4.3124 0.3154 -5.4464 37 1 2.2912 -0.8759 -4.7022 38 1 1.2375 -1.8364 -3.8316 39 1 -1.3489 -1.7054 -2.2158 40 1 -0.8076 -3.0875 -3.1985 41 1 0.1174 -2.6042 -1.7568 42 1 -0.7982 -1.6367 -5.2332 43 1 -1.3395 -0.2548 -4.2501 44 1 0.1334 -0.1202 -5.2404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:06 Heat of formation + Delta-G solvation = -28.269788 kcal Electronic energy + Delta-G solvation = -22662.833919 eV Core-core repulsion = 19579.822802 eV Total energy + Delta-G solvation = -3083.011117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43640 -38.88406 -38.25542 -34.81653 -34.06258 -32.62980 -31.01080 -30.64895 -28.70068 -28.08660 -26.19414 -24.95054 -24.19899 -22.55740 -21.55886 -20.85759 -18.87908 -18.35833 -17.24677 -16.96822 -16.74784 -16.38590 -15.99467 -15.66938 -15.31387 -15.00760 -14.67694 -14.64709 -14.10145 -13.88241 -13.54260 -13.33661 -13.23276 -13.09790 -12.98031 -12.83582 -12.69208 -12.63134 -12.49701 -12.36197 -12.16474 -12.06458 -11.83517 -11.63369 -11.47886 -11.30255 -11.07941 -10.57708 -9.71766 -8.99434 -8.80864 -8.16335 -6.26352 0.48100 0.62276 1.40079 1.41810 1.52968 2.38132 2.41673 2.88176 3.14695 3.60031 3.86877 3.93202 3.98804 4.06760 4.14735 4.29633 4.39094 4.43613 4.46289 4.56438 4.63927 4.72554 4.75168 4.77574 4.80827 4.88125 4.93621 5.00784 5.04323 5.10374 5.18157 5.25682 5.27689 5.32570 5.40814 5.50690 5.59988 5.63083 5.70501 5.75575 6.02056 6.12329 6.44988 6.65237 6.72052 6.90637 7.42760 8.93474 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.005162 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.026015 B = 5423.236294 C = 6283.704960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 N -0.536 5.536 4 C 0.203 3.797 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.100 3.900 14 C -0.122 4.122 15 C -0.081 4.081 16 C -0.162 4.162 17 C -0.084 4.084 18 C -0.214 4.214 19 C 0.128 3.872 20 O -0.313 6.313 21 C 0.065 3.935 22 C -0.146 4.146 23 C -0.171 4.171 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.043 0.957 29 H -0.006 1.006 30 H -0.019 1.019 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 -9.209 -20.171 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.053 4.053 3 N -0.259 5.259 4 C 0.077 3.923 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.028 4.028 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.180 4.180 17 C -0.102 4.102 18 C -0.233 4.233 19 C 0.082 3.918 20 O -0.228 6.228 21 C 0.010 3.990 22 C -0.203 4.203 23 C -0.229 4.229 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.012 0.988 30 H -0.001 1.001 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.415 -9.094 -19.863 21.850 hybrid contribution -0.652 0.215 1.143 1.333 sum -0.237 -8.879 -18.721 20.721 Atomic orbital electron populations 1.22181 0.98173 1.01389 1.00377 1.21864 0.93164 0.89974 1.00344 1.62292 1.59519 1.02745 1.01382 1.19466 0.93414 0.92189 0.87253 1.21414 1.18104 1.24302 0.91653 0.92631 1.25863 0.96272 0.95459 1.01910 1.70088 1.32105 1.32476 1.22905 0.85427 0.78360 0.78969 0.78124 1.19844 1.20640 1.19112 1.20812 0.96274 0.97015 0.88676 1.19245 0.98858 0.96345 0.97856 1.21027 0.93132 0.99470 0.96365 1.21276 1.01458 0.98668 0.96634 1.21262 0.95152 0.94277 0.99502 1.21449 0.99096 1.03602 0.99111 1.18908 0.87398 0.91744 0.93752 1.86331 1.40455 1.44600 1.51396 1.22684 0.97804 0.86379 0.92182 1.21896 0.99573 0.98578 1.00298 1.22307 1.00299 1.02714 0.97544 0.91736 0.95833 0.91538 0.90456 0.93835 0.98769 1.00112 0.92795 0.92318 0.94515 0.86004 0.83897 0.82990 0.83347 0.89899 0.92411 0.88230 0.92544 0.88895 0.92631 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.36 8.55 71.98 0.62 -5.75 16 2 C 0.07 3.16 5.35 86.30 0.46 3.62 16 3 N -0.54 -25.15 4.60 -905.35 -4.17 -29.32 16 4 C 0.20 11.39 4.59 85.56 0.39 11.78 16 5 C -0.52 -30.68 8.47 25.60 0.22 -30.46 16 6 H 0.06 3.30 7.63 -2.91 -0.02 3.27 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 9 Si 0.97 45.86 29.54 68.60 2.03 47.88 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 C 0.10 4.05 4.84 85.56 0.41 4.46 16 14 C -0.12 -4.15 5.18 -19.77 -0.10 -4.26 16 15 C -0.08 -2.47 9.68 22.25 0.22 -2.25 16 16 C -0.16 -3.86 10.04 22.28 0.22 -3.64 16 17 C -0.08 -1.76 10.04 22.25 0.22 -1.53 16 18 C -0.21 -4.93 8.37 22.37 0.19 -4.74 16 19 C 0.13 3.75 5.51 22.50 0.12 3.87 16 20 O -0.31 -8.82 4.46 -92.52 -0.41 -9.23 16 21 C 0.06 1.28 2.87 30.60 0.09 1.36 16 22 C -0.15 -2.62 9.56 71.98 0.69 -1.93 16 23 C -0.17 -2.80 9.27 71.98 0.67 -2.13 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.02 1.06 6.06 -2.39 -0.01 1.05 16 26 H 0.07 2.47 4.79 -2.39 -0.01 2.45 16 27 H 0.08 3.00 5.21 -2.39 -0.01 2.99 16 28 H 0.04 2.04 7.27 -2.38 -0.02 2.02 16 29 H -0.01 -0.35 7.74 -2.39 -0.02 -0.37 16 30 H -0.02 -1.13 5.82 -2.39 -0.01 -1.14 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.06 2.43 7.64 -2.38 -0.02 2.41 16 33 H 0.04 1.51 5.52 -2.39 -0.01 1.49 16 34 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.15 2.58 5.71 -2.91 -0.02 2.56 16 38 H 0.08 1.40 5.96 -2.38 -0.01 1.39 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 0.98 7.38 -2.39 -0.02 0.97 16 Total: -1.00 -68.84 339.06 3.58 -65.26 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.97 Total: 13.96 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 4.88 Total: -30.97 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -3.88 Total: -86.90 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.41 Total: -9.23 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.84 3.58 -65.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.992 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds