Wall clock time and date at job start Mon Mar 30 2020 02:01:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46902 * 109.46698 * 2 1
4 4 C 1.46901 * 110.99806 * 199.76091 * 3 2 1
5 5 C 1.50696 * 109.47696 * 66.04137 * 4 3 2
6 6 H 1.08000 * 119.99636 * 0.02562 * 5 4 3
7 7 C 1.37876 * 120.00368 * 179.97438 * 5 4 3
8 8 N 1.31517 * 119.99610 * 0.02562 * 7 5 4
9 9 Si 1.86792 * 120.00255 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47133 * 60.00446 * 9 7 5
11 11 H 1.48498 * 109.47456 * 180.02562 * 9 7 5
12 12 H 1.48502 * 109.47249 * 300.00482 * 9 7 5
13 13 C 1.46893 * 111.00397 * 75.80336 * 3 2 1
14 14 C 1.52992 * 109.47498 * 199.64905 * 13 3 2
15 15 C 1.53000 * 109.47370 * 174.87366 * 14 13 3
16 16 O 1.42902 * 109.47217 * 179.97438 * 15 14 13
17 17 C 1.35905 * 116.99998 * 179.97438 * 16 15 14
18 18 C 1.38753 * 120.05156 * 0.02562 * 17 16 15
19 19 C 1.38131 * 119.93884 * 180.02562 * 18 17 16
20 20 C 1.38288 * 120.05614 * 359.97438 * 19 18 17
21 21 C 1.38246 * 120.11110 * 0.02562 * 20 19 18
22 22 C 1.38161 * 120.05668 * 359.97438 * 21 20 19
23 23 C 1.50706 * 120.02739 * 179.97438 * 22 21 20
24 24 H 1.08997 * 109.47068 * 174.85319 * 1 2 3
25 25 H 1.09006 * 109.46885 * 294.84712 * 1 2 3
26 26 H 1.08995 * 109.47386 * 54.84862 * 1 2 3
27 27 H 1.08996 * 109.47052 * 240.00552 * 2 1 3
28 28 H 1.08997 * 109.47305 * 119.99751 * 2 1 3
29 29 H 1.09002 * 109.47203 * 186.04776 * 4 3 2
30 30 H 1.09007 * 109.46627 * 306.04192 * 4 3 2
31 31 H 0.97001 * 119.99890 * 180.02562 * 8 7 5
32 32 H 1.08998 * 109.46994 * 79.64239 * 13 3 2
33 33 H 1.09002 * 109.47018 * 319.64776 * 13 3 2
34 34 H 1.09001 * 109.47649 * 54.87258 * 14 13 3
35 35 H 1.09009 * 109.47047 * 294.87301 * 14 13 3
36 36 H 1.08998 * 109.47336 * 59.99939 * 15 14 13
37 37 H 1.08996 * 109.47158 * 299.99796 * 15 14 13
38 38 H 1.07997 * 120.03419 * 0.02562 * 18 17 16
39 39 H 1.08000 * 119.96751 * 179.72357 * 19 18 17
40 40 H 1.07997 * 119.94584 * 179.97438 * 20 19 18
41 41 H 1.08006 * 119.97021 * 179.97438 * 21 20 19
42 42 H 1.09002 * 109.46932 * 270.01726 * 23 22 21
43 43 H 1.09000 * 109.47114 * 30.01837 * 23 22 21
44 44 H 1.09004 * 109.47193 * 150.01947 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 3.4119 1.4512 -0.4637
5 6 3.4783 1.0475 -1.9140
6 1 2.5762 0.7699 -2.4390
7 6 4.6903 1.0334 -2.5711
8 7 5.7887 1.3720 -1.9318
9 14 4.7724 0.5337 -4.3690
10 1 3.9365 1.4568 -5.1780
11 1 6.1799 0.6005 -4.8377
12 1 4.2659 -0.8541 -4.5207
13 6 1.8780 1.9935 1.3294
14 6 1.9207 3.5174 1.2001
15 6 1.6458 4.1530 2.5644
16 8 1.6863 5.5763 2.4437
17 6 1.4603 6.2980 3.5729
18 6 1.2054 5.6493 4.7727
19 6 0.9756 6.3851 5.9189
20 6 0.9999 7.7670 5.8714
21 6 1.2537 8.4155 4.6772
22 6 1.4842 7.6842 3.5279
23 6 1.7602 8.3918 2.2263
24 1 -0.3633 -1.0235 -0.0922
25 1 -0.3633 0.4319 0.9326
26 1 -0.3634 0.5916 -0.8402
27 1 1.8933 -0.5137 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.7839 2.4698 -0.3527
30 1 4.0253 0.7737 0.1305
31 1 6.6414 1.3625 -2.3942
32 1 2.6942 1.6602 1.9704
33 1 0.9262 1.6926 1.7672
34 1 1.1623 3.8431 0.4882
35 1 2.9055 3.8247 0.8479
36 1 2.4042 3.8274 3.2764
37 1 0.6611 3.8458 2.9166
38 1 1.1867 4.5702 4.8104
39 1 0.7727 5.8808 6.8521
40 1 0.8195 8.3405 6.7686
41 1 1.2717 9.4949 4.6426
42 1 0.8203 8.5725 1.7046
43 1 2.2529 9.3431 2.4273
44 1 2.4070 7.7717 1.6056
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000081039822.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:00
Heat of formation + Delta-G solvation = -27.263854 kcal
Electronic energy + Delta-G solvation = -20986.412194 eV
Core-core repulsion = 17903.444697 eV
Total energy + Delta-G solvation = -3082.967497 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.178 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.24365 -37.75889 -36.97997 -33.15666 -32.70865 -32.22178 -30.11749 -29.58800
-27.11955 -26.68852 -24.82780 -22.55638 -22.35148 -21.69549 -20.82110 -19.68207
-17.98150 -16.52873 -16.10860 -16.01258 -15.70757 -14.99707 -14.52257 -14.39102
-14.15368 -13.91990 -13.59087 -13.26005 -13.14672 -12.94515 -12.39331 -12.32950
-12.10112 -11.99133 -11.65874 -11.42732 -11.32979 -11.24576 -11.03984 -10.88189
-10.74614 -10.68082 -10.55519 -10.30722 -10.06932 -9.67575 -9.17945 -8.93561
-8.42595 -8.15137 -7.26467 -6.02091 -4.03265 1.21203 1.36722 3.21437
3.33916 3.38075 3.41071 3.66054 4.42948 4.68425 4.70540 4.87077
4.95796 5.09554 5.15437 5.17597 5.33157 5.35660 5.46778 5.50741
5.58938 5.64889 5.67890 5.73124 5.77853 5.82183 6.01259 6.02656
6.13612 6.16795 6.26638 6.32956 6.36501 6.43119 6.47597 6.63713
6.71674 6.76446 6.79957 7.29864 7.35404 7.46108 7.81323 8.10818
8.21243 8.55413 9.04246 9.60771 11.08786
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.021122 B = 0.003256 C = 0.002964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.343686 B = 8598.334286 C = 9445.321573
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.056 3.944
3 N -0.536 5.536
4 C 0.191 3.809
5 C -0.508 4.508
6 H 0.063 0.937
7 C 0.055 3.945
8 N -0.899 5.899
9 Si 0.897 3.103
10 H -0.276 1.276
11 H -0.288 1.288
12 H -0.277 1.277
13 C 0.061 3.939
14 C -0.111 4.111
15 C 0.063 3.937
16 O -0.308 6.308
17 C 0.136 3.864
18 C -0.208 4.208
19 C -0.087 4.087
20 C -0.162 4.162
21 C -0.086 4.086
22 C -0.120 4.120
23 C -0.106 4.106
24 H 0.047 0.953
25 H 0.041 0.959
26 H 0.060 0.940
27 H 0.086 0.914
28 H 0.017 0.983
29 H 0.033 0.967
30 H -0.011 1.011
31 H 0.262 0.738
32 H 0.026 0.974
33 H 0.060 0.940
34 H 0.079 0.921
35 H 0.078 0.922
36 H 0.059 0.941
37 H 0.059 0.941
38 H 0.128 0.872
39 H 0.121 0.879
40 H 0.120 0.880
41 H 0.126 0.874
42 H 0.067 0.933
43 H 0.062 0.938
44 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.165 9.514 14.133 19.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.072 4.072
3 N -0.261 5.261
4 C 0.066 3.934
5 C -0.547 4.547
6 H 0.081 0.919
7 C -0.146 4.146
8 N -0.538 5.538
9 Si 0.725 3.275
10 H -0.201 1.201
11 H -0.214 1.214
12 H -0.203 1.203
13 C -0.068 4.068
14 C -0.149 4.149
15 C -0.012 4.012
16 O -0.221 6.221
17 C 0.089 3.911
18 C -0.227 4.227
19 C -0.106 4.106
20 C -0.180 4.180
21 C -0.104 4.104
22 C -0.121 4.121
23 C -0.163 4.163
24 H 0.066 0.934
25 H 0.061 0.939
26 H 0.079 0.921
27 H 0.105 0.895
28 H 0.035 0.965
29 H 0.051 0.949
30 H 0.007 0.993
31 H 0.071 0.929
32 H 0.044 0.956
33 H 0.079 0.921
34 H 0.098 0.902
35 H 0.097 0.903
36 H 0.077 0.923
37 H 0.077 0.923
38 H 0.146 0.854
39 H 0.139 0.861
40 H 0.138 0.862
41 H 0.144 0.856
42 H 0.086 0.914
43 H 0.081 0.919
44 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -10.200 9.847 13.559 19.617
hybrid contribution 0.673 -0.935 -0.078 1.154
sum -9.527 8.912 13.481 18.760
Atomic orbital electron populations
1.21798 0.96652 1.00292 1.01354 1.21965 0.94169 0.90184 1.00915
1.62069 1.25585 1.16841 1.21606 1.19776 0.81349 0.96925 0.95319
1.21128 0.93262 1.44813 0.95468 0.91896 1.24987 0.95643 0.95588
0.98376 1.69950 0.98471 1.48668 1.36724 0.86570 0.76854 0.79056
0.84984 1.20136 1.21382 1.20315 1.21854 0.99585 0.93216 0.92149
1.21492 1.04363 0.94902 0.94163 1.22885 1.00749 0.77429 1.00175
1.86103 1.85450 1.19832 1.30716 1.18920 0.95208 0.91095 0.85831
1.21301 1.08004 1.00509 0.92848 1.20911 0.98075 0.94034 0.97541
1.20992 1.04548 0.94510 0.97966 1.20867 0.98369 0.99516 0.91619
1.19328 1.05303 0.90446 0.97038 1.20624 1.02102 0.99643 0.93943
0.93432 0.93949 0.92104 0.89541 0.96478 0.94917 0.99301 0.92879
0.95569 0.92127 0.90184 0.90346 0.92303 0.92317 0.85419 0.86055
0.86176 0.85629 0.91418 0.91872 0.90758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.23 9.96 37.16 0.37 -1.86 16
2 C 0.06 1.07 5.51 -3.82 -0.02 1.05 16
3 N -0.54 -11.38 4.36 -236.08 -1.03 -12.40 16
4 C 0.19 4.94 4.55 -4.98 -0.02 4.92 16
5 C -0.51 -14.21 8.23 -34.44 -0.28 -14.49 16
6 H 0.06 1.74 7.31 -52.49 -0.38 1.36 16
7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16
8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16
9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16
10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
13 C 0.06 1.06 4.81 -3.83 -0.02 1.04 16
14 C -0.11 -1.84 5.62 -26.74 -0.15 -1.99 16
15 C 0.06 0.87 4.74 37.16 0.18 1.04 16
16 O -0.31 -4.63 9.18 -19.44 -0.18 -4.81 16
17 C 0.14 1.85 6.66 -39.22 -0.26 1.59 16
18 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16
19 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16
20 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16
21 C -0.09 -0.89 9.70 -39.61 -0.38 -1.27 16
22 C -0.12 -1.49 5.89 -104.47 -0.62 -2.10 16
23 C -0.11 -1.18 9.79 36.01 0.35 -0.83 16
24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.04 0.60 6.90 -51.93 -0.36 0.24 16
26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
27 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16
28 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16
29 H 0.03 0.90 6.71 -51.93 -0.35 0.55 16
30 H -0.01 -0.30 8.12 -51.92 -0.42 -0.72 16
31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16
32 H 0.03 0.46 8.00 -51.93 -0.42 0.05 16
33 H 0.06 0.92 6.56 -51.93 -0.34 0.58 16
34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
35 H 0.08 1.48 6.95 -51.92 -0.36 1.12 16
36 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16
37 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16
38 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16
39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16
40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
41 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16
42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16
44 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16
LS Contribution 355.14 15.07 5.35 5.35
Total: -1.00 -30.34 355.14 -9.66 -40.00
By element:
Atomic # 1 Polarization: 6.16 SS G_CDS: -7.42 Total: -1.26 kcal
Atomic # 6 Polarization: -15.43 SS G_CDS: -2.11 Total: -17.53 kcal
Atomic # 7 Polarization: -38.11 SS G_CDS: -0.29 Total: -38.40 kcal
Atomic # 8 Polarization: -4.63 SS G_CDS: -0.18 Total: -4.81 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -30.34 -9.66 -40.00 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081039822.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.741 kcal
(2) G-P(sol) polarization free energy of solvation -30.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds