Wall clock time and date at job start Mon Mar 30 2020 02:00:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46902 * 109.46698 * 2 1
4 4 C 1.46901 * 110.99806 * 199.76091 * 3 2 1
5 5 C 1.50696 * 109.47696 * 66.04137 * 4 3 2
6 6 H 1.08000 * 119.99636 * 0.02562 * 5 4 3
7 7 C 1.37876 * 120.00368 * 179.97438 * 5 4 3
8 8 N 1.31517 * 119.99610 * 0.02562 * 7 5 4
9 9 Si 1.86792 * 120.00255 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47133 * 60.00446 * 9 7 5
11 11 H 1.48498 * 109.47456 * 180.02562 * 9 7 5
12 12 H 1.48502 * 109.47249 * 300.00482 * 9 7 5
13 13 C 1.46893 * 111.00397 * 75.80336 * 3 2 1
14 14 C 1.52992 * 109.47498 * 199.64905 * 13 3 2
15 15 C 1.53000 * 109.47370 * 174.87366 * 14 13 3
16 16 O 1.42902 * 109.47217 * 179.97438 * 15 14 13
17 17 C 1.35905 * 116.99998 * 179.97438 * 16 15 14
18 18 C 1.38753 * 120.05156 * 0.02562 * 17 16 15
19 19 C 1.38131 * 119.93884 * 180.02562 * 18 17 16
20 20 C 1.38288 * 120.05614 * 359.97438 * 19 18 17
21 21 C 1.38246 * 120.11110 * 0.02562 * 20 19 18
22 22 C 1.38161 * 120.05668 * 359.97438 * 21 20 19
23 23 C 1.50706 * 120.02739 * 179.97438 * 22 21 20
24 24 H 1.08997 * 109.47068 * 174.85319 * 1 2 3
25 25 H 1.09006 * 109.46885 * 294.84712 * 1 2 3
26 26 H 1.08995 * 109.47386 * 54.84862 * 1 2 3
27 27 H 1.08996 * 109.47052 * 240.00552 * 2 1 3
28 28 H 1.08997 * 109.47305 * 119.99751 * 2 1 3
29 29 H 1.09002 * 109.47203 * 186.04776 * 4 3 2
30 30 H 1.09007 * 109.46627 * 306.04192 * 4 3 2
31 31 H 0.97001 * 119.99890 * 180.02562 * 8 7 5
32 32 H 1.08998 * 109.46994 * 79.64239 * 13 3 2
33 33 H 1.09002 * 109.47018 * 319.64776 * 13 3 2
34 34 H 1.09001 * 109.47649 * 54.87258 * 14 13 3
35 35 H 1.09009 * 109.47047 * 294.87301 * 14 13 3
36 36 H 1.08998 * 109.47336 * 59.99939 * 15 14 13
37 37 H 1.08996 * 109.47158 * 299.99796 * 15 14 13
38 38 H 1.07997 * 120.03419 * 0.02562 * 18 17 16
39 39 H 1.08000 * 119.96751 * 179.72357 * 19 18 17
40 40 H 1.07997 * 119.94584 * 179.97438 * 20 19 18
41 41 H 1.08006 * 119.97021 * 179.97438 * 21 20 19
42 42 H 1.09002 * 109.46932 * 270.01726 * 23 22 21
43 43 H 1.09000 * 109.47114 * 30.01837 * 23 22 21
44 44 H 1.09004 * 109.47193 * 150.01947 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 3.4119 1.4512 -0.4637
5 6 3.4783 1.0475 -1.9140
6 1 2.5762 0.7699 -2.4390
7 6 4.6903 1.0334 -2.5711
8 7 5.7887 1.3720 -1.9318
9 14 4.7724 0.5337 -4.3690
10 1 3.9365 1.4568 -5.1780
11 1 6.1799 0.6005 -4.8377
12 1 4.2659 -0.8541 -4.5207
13 6 1.8780 1.9935 1.3294
14 6 1.9207 3.5174 1.2001
15 6 1.6458 4.1530 2.5644
16 8 1.6863 5.5763 2.4437
17 6 1.4603 6.2980 3.5729
18 6 1.2054 5.6493 4.7727
19 6 0.9756 6.3851 5.9189
20 6 0.9999 7.7670 5.8714
21 6 1.2537 8.4155 4.6772
22 6 1.4842 7.6842 3.5279
23 6 1.7602 8.3918 2.2263
24 1 -0.3633 -1.0235 -0.0922
25 1 -0.3633 0.4319 0.9326
26 1 -0.3634 0.5916 -0.8402
27 1 1.8933 -0.5137 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.7839 2.4698 -0.3527
30 1 4.0253 0.7737 0.1305
31 1 6.6414 1.3625 -2.3942
32 1 2.6942 1.6602 1.9704
33 1 0.9262 1.6926 1.7672
34 1 1.1623 3.8431 0.4882
35 1 2.9055 3.8247 0.8479
36 1 2.4042 3.8274 3.2764
37 1 0.6611 3.8458 2.9166
38 1 1.1867 4.5702 4.8104
39 1 0.7727 5.8808 6.8521
40 1 0.8195 8.3405 6.7686
41 1 1.2717 9.4949 4.6426
42 1 0.8203 8.5725 1.7046
43 1 2.2529 9.3431 2.4273
44 1 2.4070 7.7717 1.6056
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000081039822.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:00:59
Heat of formation + Delta-G solvation = -44.250685 kcal
Electronic energy + Delta-G solvation = -20987.148798 eV
Core-core repulsion = 17903.444697 eV
Total energy + Delta-G solvation = -3083.704101 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.178 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.17912 -39.04954 -38.28766 -34.89837 -34.06563 -33.42452 -31.42470 -30.79074
-28.80332 -27.64405 -26.25588 -24.40295 -23.53574 -22.60828 -21.94950 -21.28260
-18.96858 -18.56700 -17.33102 -17.05332 -16.79383 -16.51911 -15.90875 -15.84112
-15.48293 -15.17368 -14.89442 -14.38572 -14.24829 -14.07727 -14.00302 -13.88531
-13.16673 -13.13450 -12.92559 -12.77539 -12.76031 -12.60165 -12.43682 -12.32639
-12.27245 -12.17430 -11.79767 -11.73371 -11.63271 -11.36544 -11.19801 -10.60398
-9.75725 -9.05982 -9.02191 -8.20790 -6.30564 0.38890 0.51086 1.40016
1.43426 1.51238 2.17430 2.40176 2.82908 3.11583 3.32455 3.84442
3.87600 3.91452 4.07242 4.19225 4.22928 4.24988 4.34516 4.41453
4.42762 4.52305 4.59282 4.62965 4.71219 4.78036 4.79013 4.80474
4.97571 4.99546 5.02999 5.17942 5.18828 5.26423 5.32205 5.35067
5.44303 5.48196 5.54374 5.61383 5.65737 5.92758 6.07269 6.36705
6.48424 6.66004 6.85962 7.38913 8.90245
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.021122 B = 0.003256 C = 0.002964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.343686 B = 8598.334286 C = 9445.321573
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.053 3.947
3 N -0.545 5.545
4 C 0.208 3.792
5 C -0.523 4.523
6 H 0.063 0.937
7 C 0.001 3.999
8 N -0.935 5.935
9 Si 0.968 3.032
10 H -0.269 1.269
11 H -0.283 1.283
12 H -0.266 1.266
13 C 0.063 3.937
14 C -0.102 4.102
15 C 0.072 3.928
16 O -0.332 6.332
17 C 0.102 3.898
18 C -0.218 4.218
19 C -0.092 4.092
20 C -0.159 4.159
21 C -0.088 4.088
22 C -0.141 4.141
23 C -0.104 4.104
24 H 0.071 0.929
25 H 0.062 0.938
26 H 0.051 0.949
27 H 0.059 0.941
28 H 0.024 0.976
29 H 0.005 0.995
30 H -0.041 1.041
31 H 0.264 0.736
32 H 0.022 0.978
33 H 0.095 0.905
34 H 0.071 0.929
35 H 0.042 0.958
36 H 0.065 0.935
37 H 0.082 0.918
38 H 0.136 0.864
39 H 0.148 0.852
40 H 0.150 0.850
41 H 0.151 0.849
42 H 0.071 0.929
43 H 0.083 0.917
44 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.036 9.784 15.362 21.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.075 4.075
3 N -0.269 5.269
4 C 0.082 3.918
5 C -0.562 4.562
6 H 0.081 0.919
7 C -0.197 4.197
8 N -0.576 5.576
9 Si 0.793 3.207
10 H -0.194 1.194
11 H -0.209 1.209
12 H -0.191 1.191
13 C -0.065 4.065
14 C -0.140 4.140
15 C -0.003 4.003
16 O -0.246 6.246
17 C 0.057 3.943
18 C -0.237 4.237
19 C -0.109 4.109
20 C -0.177 4.177
21 C -0.106 4.106
22 C -0.142 4.142
23 C -0.161 4.161
24 H 0.090 0.910
25 H 0.080 0.920
26 H 0.070 0.930
27 H 0.077 0.923
28 H 0.042 0.958
29 H 0.023 0.977
30 H -0.024 1.024
31 H 0.073 0.927
32 H 0.040 0.960
33 H 0.113 0.887
34 H 0.090 0.910
35 H 0.061 0.939
36 H 0.083 0.917
37 H 0.100 0.900
38 H 0.154 0.846
39 H 0.165 0.835
40 H 0.168 0.832
41 H 0.169 0.831
42 H 0.089 0.911
43 H 0.102 0.898
44 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -12.098 10.115 14.803 21.629
hybrid contribution 1.233 -0.962 -0.348 1.602
sum -10.865 9.153 14.455 20.267
Atomic orbital electron populations
1.21699 0.93184 1.01966 1.02037 1.22032 0.96886 0.88675 0.99923
1.62023 1.22250 1.18534 1.24137 1.19391 0.83712 0.94270 0.94469
1.21451 0.93453 1.44750 0.96518 0.91891 1.25922 0.95175 0.95403
1.03236 1.70086 0.99080 1.49691 1.38726 0.85451 0.77060 0.79160
0.79054 1.19384 1.20885 1.19080 1.21931 1.01089 0.93303 0.90216
1.21329 1.02023 0.94754 0.95937 1.22728 1.02157 0.77321 0.98073
1.86045 1.86285 1.20138 1.32132 1.19256 0.97287 0.91728 0.86011
1.21510 1.08102 1.01199 0.92864 1.21290 0.97166 0.94543 0.97943
1.21417 1.02849 0.94647 0.98772 1.21212 0.97439 1.00815 0.91093
1.19639 1.06001 0.90385 0.98167 1.20606 1.01977 1.00033 0.93470
0.90991 0.91952 0.92966 0.92282 0.95792 0.97666 1.02386 0.92729
0.96018 0.88674 0.90987 0.93868 0.91710 0.89971 0.84624 0.83456
0.83218 0.83126 0.91067 0.89839 0.93152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.78 9.96 71.98 0.72 -3.06 16
2 C 0.05 2.01 5.51 86.30 0.48 2.48 16
3 N -0.54 -23.58 4.36 -900.82 -3.92 -27.50 16
4 C 0.21 11.29 4.55 85.56 0.39 11.68 16
5 C -0.52 -30.17 8.23 25.60 0.21 -29.96 16
6 H 0.06 3.55 7.31 -2.91 -0.02 3.53 16
7 C 0.00 0.03 5.46 84.65 0.46 0.49 16
8 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16
9 Si 0.97 44.93 29.54 68.60 2.03 46.96 16
10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
13 C 0.06 2.19 4.81 86.30 0.41 2.60 16
14 C -0.10 -3.51 5.62 30.59 0.17 -3.33 16
15 C 0.07 2.00 4.74 71.98 0.34 2.34 16
16 O -0.33 -10.30 9.18 -92.48 -0.85 -11.15 16
17 C 0.10 2.79 6.66 22.51 0.15 2.94 16
18 C -0.22 -4.94 9.04 22.37 0.20 -4.74 16
19 C -0.09 -1.65 10.04 22.26 0.22 -1.43 16
20 C -0.16 -2.63 10.04 22.28 0.22 -2.41 16
21 C -0.09 -1.63 9.70 22.25 0.22 -1.42 16
22 C -0.14 -3.42 5.89 -19.77 -0.12 -3.54 16
23 C -0.10 -2.33 9.79 71.24 0.70 -1.63 16
24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
25 H 0.06 1.55 6.90 -2.38 -0.02 1.53 16
26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
27 H 0.06 2.55 6.58 -2.39 -0.02 2.54 16
28 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16
29 H 0.01 0.31 6.71 -2.39 -0.02 0.29 16
30 H -0.04 -2.45 8.12 -2.38 -0.02 -2.47 16
31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
32 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16
33 H 0.10 2.67 6.56 -2.39 -0.02 2.65 16
34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16
35 H 0.04 1.76 6.95 -2.38 -0.02 1.74 16
36 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16
37 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16
38 H 0.14 2.70 6.30 -2.91 -0.02 2.68 16
39 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16
40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16
41 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16
42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
43 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16
44 H 0.05 1.34 7.53 -2.39 -0.02 1.32 16
Total: -1.00 -68.26 355.14 3.27 -64.99
By element:
Atomic # 1 Polarization: 11.83 SS G_CDS: 0.95 Total: 12.78 kcal
Atomic # 6 Polarization: -33.76 SS G_CDS: 4.78 Total: -28.99 kcal
Atomic # 7 Polarization: -80.95 SS G_CDS: -3.64 Total: -84.59 kcal
Atomic # 8 Polarization: -10.30 SS G_CDS: -0.85 Total: -11.15 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -68.26 3.27 -64.99 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081039822.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.739 kcal
(2) G-P(sol) polarization free energy of solvation -68.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds