Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46698 * 2 1 4 4 C 1.46901 * 110.99806 * 199.76091 * 3 2 1 5 5 C 1.50696 * 109.47696 * 66.04137 * 4 3 2 6 6 H 1.08000 * 119.99636 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00368 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99610 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00255 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47133 * 60.00446 * 9 7 5 11 11 H 1.48498 * 109.47456 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47249 * 300.00482 * 9 7 5 13 13 C 1.46893 * 111.00397 * 75.80336 * 3 2 1 14 14 C 1.52992 * 109.47498 * 199.64905 * 13 3 2 15 15 C 1.53000 * 109.47370 * 174.87366 * 14 13 3 16 16 O 1.42902 * 109.47217 * 179.97438 * 15 14 13 17 17 C 1.35905 * 116.99998 * 179.97438 * 16 15 14 18 18 C 1.38753 * 120.05156 * 0.02562 * 17 16 15 19 19 C 1.38131 * 119.93884 * 180.02562 * 18 17 16 20 20 C 1.38288 * 120.05614 * 359.97438 * 19 18 17 21 21 C 1.38246 * 120.11110 * 0.02562 * 20 19 18 22 22 C 1.38161 * 120.05668 * 359.97438 * 21 20 19 23 23 C 1.50706 * 120.02739 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47068 * 174.85319 * 1 2 3 25 25 H 1.09006 * 109.46885 * 294.84712 * 1 2 3 26 26 H 1.08995 * 109.47386 * 54.84862 * 1 2 3 27 27 H 1.08996 * 109.47052 * 240.00552 * 2 1 3 28 28 H 1.08997 * 109.47305 * 119.99751 * 2 1 3 29 29 H 1.09002 * 109.47203 * 186.04776 * 4 3 2 30 30 H 1.09007 * 109.46627 * 306.04192 * 4 3 2 31 31 H 0.97001 * 119.99890 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46994 * 79.64239 * 13 3 2 33 33 H 1.09002 * 109.47018 * 319.64776 * 13 3 2 34 34 H 1.09001 * 109.47649 * 54.87258 * 14 13 3 35 35 H 1.09009 * 109.47047 * 294.87301 * 14 13 3 36 36 H 1.08998 * 109.47336 * 59.99939 * 15 14 13 37 37 H 1.08996 * 109.47158 * 299.99796 * 15 14 13 38 38 H 1.07997 * 120.03419 * 0.02562 * 18 17 16 39 39 H 1.08000 * 119.96751 * 179.72357 * 19 18 17 40 40 H 1.07997 * 119.94584 * 179.97438 * 20 19 18 41 41 H 1.08006 * 119.97021 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46932 * 270.01726 * 23 22 21 43 43 H 1.09000 * 109.47114 * 30.01837 * 23 22 21 44 44 H 1.09004 * 109.47193 * 150.01947 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4512 -0.4637 5 6 3.4783 1.0475 -1.9140 6 1 2.5762 0.7699 -2.4390 7 6 4.6903 1.0334 -2.5711 8 7 5.7887 1.3720 -1.9318 9 14 4.7724 0.5337 -4.3690 10 1 3.9365 1.4568 -5.1780 11 1 6.1799 0.6005 -4.8377 12 1 4.2659 -0.8541 -4.5207 13 6 1.8780 1.9935 1.3294 14 6 1.9207 3.5174 1.2001 15 6 1.6458 4.1530 2.5644 16 8 1.6863 5.5763 2.4437 17 6 1.4603 6.2980 3.5729 18 6 1.2054 5.6493 4.7727 19 6 0.9756 6.3851 5.9189 20 6 0.9999 7.7670 5.8714 21 6 1.2537 8.4155 4.6772 22 6 1.4842 7.6842 3.5279 23 6 1.7602 8.3918 2.2263 24 1 -0.3633 -1.0235 -0.0922 25 1 -0.3633 0.4319 0.9326 26 1 -0.3634 0.5916 -0.8402 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7839 2.4698 -0.3527 30 1 4.0253 0.7737 0.1305 31 1 6.6414 1.3625 -2.3942 32 1 2.6942 1.6602 1.9704 33 1 0.9262 1.6926 1.7672 34 1 1.1623 3.8431 0.4882 35 1 2.9055 3.8247 0.8479 36 1 2.4042 3.8274 3.2764 37 1 0.6611 3.8458 2.9166 38 1 1.1867 4.5702 4.8104 39 1 0.7727 5.8808 6.8521 40 1 0.8195 8.3405 6.7686 41 1 1.2717 9.4949 4.6426 42 1 0.8203 8.5725 1.7046 43 1 2.2529 9.3431 2.4273 44 1 2.4070 7.7717 1.6056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = -44.250685 kcal Electronic energy + Delta-G solvation = -20987.148798 eV Core-core repulsion = 17903.444697 eV Total energy + Delta-G solvation = -3083.704101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17912 -39.04954 -38.28766 -34.89837 -34.06563 -33.42452 -31.42470 -30.79074 -28.80332 -27.64405 -26.25588 -24.40295 -23.53574 -22.60828 -21.94950 -21.28260 -18.96858 -18.56700 -17.33102 -17.05332 -16.79383 -16.51911 -15.90875 -15.84112 -15.48293 -15.17368 -14.89442 -14.38572 -14.24829 -14.07727 -14.00302 -13.88531 -13.16673 -13.13450 -12.92559 -12.77539 -12.76031 -12.60165 -12.43682 -12.32639 -12.27245 -12.17430 -11.79767 -11.73371 -11.63271 -11.36544 -11.19801 -10.60398 -9.75725 -9.05982 -9.02191 -8.20790 -6.30564 0.38890 0.51086 1.40016 1.43426 1.51238 2.17430 2.40176 2.82908 3.11583 3.32455 3.84442 3.87600 3.91452 4.07242 4.19225 4.22928 4.24988 4.34516 4.41453 4.42762 4.52305 4.59282 4.62965 4.71219 4.78036 4.79013 4.80474 4.97571 4.99546 5.02999 5.17942 5.18828 5.26423 5.32205 5.35067 5.44303 5.48196 5.54374 5.61383 5.65737 5.92758 6.07269 6.36705 6.48424 6.66004 6.85962 7.38913 8.90245 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.003256 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.343686 B = 8598.334286 C = 9445.321573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 N -0.545 5.545 4 C 0.208 3.792 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.063 3.937 14 C -0.102 4.102 15 C 0.072 3.928 16 O -0.332 6.332 17 C 0.102 3.898 18 C -0.218 4.218 19 C -0.092 4.092 20 C -0.159 4.159 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.005 0.995 30 H -0.041 1.041 31 H 0.264 0.736 32 H 0.022 0.978 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 9.784 15.362 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.269 5.269 4 C 0.082 3.918 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.003 4.003 16 O -0.246 6.246 17 C 0.057 3.943 18 C -0.237 4.237 19 C -0.109 4.109 20 C -0.177 4.177 21 C -0.106 4.106 22 C -0.142 4.142 23 C -0.161 4.161 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.023 0.977 30 H -0.024 1.024 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.098 10.115 14.803 21.629 hybrid contribution 1.233 -0.962 -0.348 1.602 sum -10.865 9.153 14.455 20.267 Atomic orbital electron populations 1.21699 0.93184 1.01966 1.02037 1.22032 0.96886 0.88675 0.99923 1.62023 1.22250 1.18534 1.24137 1.19391 0.83712 0.94270 0.94469 1.21451 0.93453 1.44750 0.96518 0.91891 1.25922 0.95175 0.95403 1.03236 1.70086 0.99080 1.49691 1.38726 0.85451 0.77060 0.79160 0.79054 1.19384 1.20885 1.19080 1.21931 1.01089 0.93303 0.90216 1.21329 1.02023 0.94754 0.95937 1.22728 1.02157 0.77321 0.98073 1.86045 1.86285 1.20138 1.32132 1.19256 0.97287 0.91728 0.86011 1.21510 1.08102 1.01199 0.92864 1.21290 0.97166 0.94543 0.97943 1.21417 1.02849 0.94647 0.98772 1.21212 0.97439 1.00815 0.91093 1.19639 1.06001 0.90385 0.98167 1.20606 1.01977 1.00033 0.93470 0.90991 0.91952 0.92966 0.92282 0.95792 0.97666 1.02386 0.92729 0.96018 0.88674 0.90987 0.93868 0.91710 0.89971 0.84624 0.83456 0.83218 0.83126 0.91067 0.89839 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.96 71.98 0.72 -3.06 16 2 C 0.05 2.01 5.51 86.30 0.48 2.48 16 3 N -0.54 -23.58 4.36 -900.82 -3.92 -27.50 16 4 C 0.21 11.29 4.55 85.56 0.39 11.68 16 5 C -0.52 -30.17 8.23 25.60 0.21 -29.96 16 6 H 0.06 3.55 7.31 -2.91 -0.02 3.53 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.06 2.19 4.81 86.30 0.41 2.60 16 14 C -0.10 -3.51 5.62 30.59 0.17 -3.33 16 15 C 0.07 2.00 4.74 71.98 0.34 2.34 16 16 O -0.33 -10.30 9.18 -92.48 -0.85 -11.15 16 17 C 0.10 2.79 6.66 22.51 0.15 2.94 16 18 C -0.22 -4.94 9.04 22.37 0.20 -4.74 16 19 C -0.09 -1.65 10.04 22.26 0.22 -1.43 16 20 C -0.16 -2.63 10.04 22.28 0.22 -2.41 16 21 C -0.09 -1.63 9.70 22.25 0.22 -1.42 16 22 C -0.14 -3.42 5.89 -19.77 -0.12 -3.54 16 23 C -0.10 -2.33 9.79 71.24 0.70 -1.63 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.55 6.90 -2.38 -0.02 1.53 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 2.55 6.58 -2.39 -0.02 2.54 16 28 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 29 H 0.01 0.31 6.71 -2.39 -0.02 0.29 16 30 H -0.04 -2.45 8.12 -2.38 -0.02 -2.47 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 33 H 0.10 2.67 6.56 -2.39 -0.02 2.65 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.04 1.76 6.95 -2.38 -0.02 1.74 16 36 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16 37 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 38 H 0.14 2.70 6.30 -2.91 -0.02 2.68 16 39 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 44 H 0.05 1.34 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -68.26 355.14 3.27 -64.99 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.95 Total: 12.78 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.78 Total: -28.99 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.64 Total: -84.59 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.85 Total: -11.15 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.26 3.27 -64.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.739 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds