Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39871 * 125.90171 * 2 1 4 4 C 1.35313 * 107.92272 * 179.71734 * 3 2 1 5 5 C 1.50704 * 126.13029 * 180.26592 * 4 3 2 6 6 N 1.34942 * 107.74584 * 0.42438 * 4 3 2 7 7 C 1.46501 * 126.04036 * 179.84148 * 6 4 3 8 8 C 1.53009 * 109.46992 * 269.71509 * 7 6 4 9 9 N 1.46901 * 109.47020 * 174.78237 * 8 7 6 10 10 C 1.46894 * 111.00057 * 71.94090 * 9 8 7 11 11 C 1.50692 * 109.47248 * 189.99681 * 10 9 8 12 12 H 1.08000 * 120.00508 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00173 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99926 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99774 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46759 * 90.00284 * 15 13 11 17 17 H 1.48500 * 109.46867 * 209.99825 * 15 13 11 18 18 H 1.48496 * 109.47352 * 330.00360 * 15 13 11 19 19 C 1.46898 * 110.99861 * 195.90088 * 9 8 7 20 20 C 1.52991 * 109.47626 * 75.45807 * 19 9 8 21 21 C 1.52996 * 117.50350 * 243.51589 * 20 19 9 22 22 C 1.53002 * 60.00141 * 252.51009 * 21 20 19 23 23 N 1.30840 * 125.90008 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.46795 * 270.00044 * 1 2 3 25 25 H 1.08997 * 109.46700 * 29.99927 * 1 2 3 26 26 H 1.08998 * 109.47072 * 149.99746 * 1 2 3 27 27 H 1.08003 * 126.03805 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.47026 * 270.19262 * 5 4 3 29 29 H 1.09001 * 109.46896 * 30.18239 * 5 4 3 30 30 H 1.08991 * 109.47597 * 150.18534 * 5 4 3 31 31 H 1.08993 * 109.47495 * 149.71348 * 7 6 4 32 32 H 1.09000 * 109.47051 * 29.71061 * 7 6 4 33 33 H 1.09004 * 109.46940 * 54.78359 * 8 7 6 34 34 H 1.08997 * 109.46877 * 294.78146 * 8 7 6 35 35 H 1.08998 * 109.47287 * 310.00222 * 10 9 8 36 36 H 1.09005 * 109.46880 * 69.99733 * 10 9 8 37 37 H 0.97003 * 119.99488 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.47008 * 315.45709 * 19 9 8 39 39 H 1.09001 * 109.46853 * 195.46196 * 19 9 8 40 40 H 1.09004 * 115.54693 * 29.22233 * 20 19 9 41 41 H 1.09007 * 117.49478 * 359.97438 * 21 20 19 42 42 H 1.09000 * 117.50306 * 145.01869 * 21 20 19 43 43 H 1.09003 * 117.49804 * 252.51269 * 22 21 20 44 44 H 1.08996 * 117.50151 * 107.48473 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0064 5 6 4.8351 1.5988 0.0143 6 7 3.6088 -0.6341 0.0007 7 6 4.7899 -1.5008 0.0013 8 6 5.2019 -1.8023 -1.4411 9 7 6.4564 -2.5667 -1.4425 10 6 6.2348 -3.9429 -0.9790 11 6 7.5635 -4.6190 -0.7593 12 1 8.4809 -4.0801 -0.9448 13 6 7.6081 -5.9256 -0.3212 14 7 8.7677 -6.5155 -0.1289 15 14 6.0214 -6.8575 0.0005 16 1 5.5934 -7.5497 -1.2417 17 1 6.2447 -7.8594 1.0736 18 1 4.9649 -5.9043 0.4251 19 6 7.0798 -2.5529 -2.7725 20 6 7.7286 -1.1892 -3.0177 21 6 7.1720 -0.3371 -4.1600 22 6 8.5372 -1.0126 -4.3045 23 7 2.2742 -1.0599 0.0005 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.9924 2.1598 -0.0004 28 1 5.1330 1.8162 -1.0115 29 1 4.6058 2.5307 0.5312 30 1 5.6494 1.0888 0.5289 31 1 4.5561 -2.4333 0.5148 32 1 5.6091 -0.9983 0.5156 33 1 5.3461 -0.8664 -1.9810 34 1 4.4204 -2.3858 -1.9278 35 1 5.6766 -3.9256 -0.0430 36 1 5.6674 -4.4923 -1.7303 37 1 8.7990 -7.4349 0.1789 38 1 6.3195 -2.7353 -3.5320 39 1 7.8404 -3.3319 -2.8253 40 1 8.0805 -0.6691 -2.1267 41 1 6.3438 -0.7483 -4.7373 42 1 7.1575 0.7439 -4.0208 43 1 9.4209 -0.3760 -4.2602 44 1 8.6069 -1.8680 -4.9764 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081044707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = 79.035510 kcal Electronic energy + Delta-G solvation = -21743.287793 eV Core-core repulsion = 18697.222534 eV Total energy + Delta-G solvation = -3046.065259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.21955 -39.50374 -37.29608 -35.31671 -34.46813 -32.97463 -31.25139 -30.02411 -28.39597 -27.82480 -26.10067 -24.25420 -23.15265 -22.14260 -21.31658 -21.14651 -20.13927 -19.09223 -17.69986 -16.89189 -16.65639 -16.41838 -15.85117 -15.49855 -15.33745 -15.06168 -14.58995 -14.53622 -14.33696 -14.06574 -13.93233 -13.76332 -13.61203 -13.41305 -13.18305 -12.90573 -12.70657 -12.67339 -12.57102 -12.33063 -12.21687 -11.88836 -11.87125 -11.53792 -11.40408 -11.09184 -10.84614 -10.70761 -10.03479 -9.41894 -9.21533 -8.31743 -6.33844 0.94580 1.28620 1.31488 1.40766 1.51024 1.86962 2.29129 2.90771 3.00460 3.12999 3.57341 3.77239 3.86726 3.95857 4.02058 4.09150 4.14576 4.25303 4.28530 4.40521 4.53726 4.58877 4.66882 4.70464 4.77532 4.79586 4.80103 4.82649 4.83541 4.94318 4.98137 5.03053 5.07001 5.10831 5.13415 5.29089 5.39205 5.39313 5.49038 5.82668 5.90881 6.16683 6.23955 6.53732 6.72700 6.85526 7.29281 8.84361 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.005590 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.899273 B = 5008.035763 C = 6713.885141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.059 3.941 3 C -0.288 4.288 4 C 0.085 3.915 5 C -0.091 4.091 6 N -0.375 5.375 7 C 0.142 3.858 8 C 0.058 3.942 9 N -0.524 5.524 10 C 0.169 3.831 11 C -0.510 4.510 12 H 0.048 0.952 13 C 0.017 3.983 14 N -0.942 5.942 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.096 3.904 20 C -0.153 4.153 21 C -0.169 4.169 22 C -0.176 4.176 23 N -0.352 5.352 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.172 0.828 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.014 0.986 35 H 0.030 0.970 36 H -0.022 1.022 37 H 0.267 0.733 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 19.186 -3.279 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C -0.317 4.317 4 C -0.043 4.043 5 C -0.149 4.149 6 N -0.158 5.158 7 C 0.020 3.980 8 C -0.072 4.072 9 N -0.248 5.248 10 C 0.042 3.958 11 C -0.548 4.548 12 H 0.066 0.934 13 C -0.181 4.181 14 N -0.582 5.582 15 Si 0.758 3.242 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.032 4.032 20 C -0.171 4.171 21 C -0.206 4.206 22 C -0.213 4.213 23 N -0.175 5.175 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.189 0.811 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.032 0.968 35 H 0.048 0.952 36 H -0.004 1.004 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.828 17.873 -2.890 21.096 hybrid contribution -0.767 -0.916 -0.289 1.229 sum -11.595 16.957 -3.179 20.787 Atomic orbital electron populations 1.20271 0.84643 1.03992 1.03738 1.22989 0.98428 0.90824 0.98461 1.21450 0.90630 1.00479 1.19141 1.21820 0.98954 0.84113 0.99394 1.20608 0.91645 0.98164 1.04517 1.48632 1.04793 1.04985 1.57381 1.21570 0.83816 0.94446 0.98180 1.22250 0.90473 0.98849 0.95583 1.61757 1.22806 1.14130 1.26078 1.20015 0.95601 0.85786 0.94433 1.21174 0.92687 0.96987 1.43991 0.93417 1.25668 0.98996 0.98413 0.94999 1.70019 1.26390 1.13658 1.48153 0.85920 0.80626 0.79061 0.78587 1.19583 1.20368 1.18117 1.21530 0.97033 0.96777 0.87879 1.22193 1.04581 0.96696 0.93654 1.23093 0.96761 0.99524 1.01183 1.22998 0.95715 1.03240 0.99378 1.77318 0.87516 1.24821 1.27831 0.89596 0.88122 0.91659 0.81097 0.88947 0.87487 0.90899 0.91019 0.86662 0.89036 0.96757 0.95187 1.00410 0.92377 0.95707 0.92016 0.87417 0.89469 0.86999 0.87329 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.45 71.24 0.74 -0.48 16 2 C 0.06 1.57 7.22 43.10 0.31 1.88 16 3 C -0.29 -6.70 10.65 21.99 0.23 -6.46 16 4 C 0.08 2.09 6.93 41.41 0.29 2.38 16 5 C -0.09 -1.49 10.12 71.24 0.72 -0.77 16 6 N -0.38 -11.72 3.61 -334.69 -1.21 -12.93 16 7 C 0.14 4.61 6.21 86.38 0.54 5.14 16 8 C 0.06 1.96 5.12 86.31 0.44 2.40 16 9 N -0.52 -20.91 4.38 -900.82 -3.95 -24.86 16 10 C 0.17 8.11 3.64 85.56 0.31 8.42 16 11 C -0.51 -29.02 8.79 25.60 0.23 -28.80 16 12 H 0.05 2.99 7.55 -2.91 -0.02 2.97 16 13 C 0.02 1.01 5.47 84.66 0.46 1.47 16 14 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 15 Si 0.93 44.87 27.47 68.60 1.88 46.75 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 19 C 0.10 3.58 5.09 86.30 0.44 4.02 16 20 C -0.15 -4.46 5.15 -10.80 -0.06 -4.51 16 21 C -0.17 -3.80 10.15 30.59 0.31 -3.49 16 22 C -0.18 -4.31 10.25 30.60 0.31 -4.00 16 23 N -0.35 -12.00 12.58 -47.38 -0.60 -12.60 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.24 7.08 -2.39 -0.02 1.22 16 31 H 0.07 2.66 6.80 -2.39 -0.02 2.64 16 32 H 0.12 3.36 7.04 -2.39 -0.02 3.34 16 33 H 0.09 2.73 7.32 -2.39 -0.02 2.71 16 34 H 0.01 0.53 8.05 -2.39 -0.02 0.52 16 35 H 0.03 1.45 5.55 -2.39 -0.01 1.44 16 36 H -0.02 -1.07 7.55 -2.38 -0.02 -1.09 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.02 0.90 7.74 -2.39 -0.02 0.88 16 39 H 0.06 2.75 6.58 -2.39 -0.02 2.73 16 40 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 1.99 8.03 -2.38 -0.02 1.97 16 42 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.81 356.89 2.61 -67.20 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.90 Total: 17.28 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.28 Total: -22.82 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.46 Total: -108.41 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -69.81 2.61 -67.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081044707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.235 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds