Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46839 * 2 1 4 4 C 1.46894 * 111.00003 * 287.52837 * 3 2 1 5 5 C 1.50700 * 109.47200 * 159.66012 * 4 3 2 6 6 H 1.07997 * 119.99896 * 3.46385 * 5 4 3 7 7 C 1.37875 * 120.00217 * 183.47702 * 5 4 3 8 8 N 1.31521 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46917 * 119.99746 * 9 7 5 12 12 H 1.48498 * 109.47050 * 239.99317 * 9 7 5 13 13 C 1.46900 * 110.99711 * 163.57714 * 3 2 1 14 14 C 1.50705 * 109.47160 * 293.95566 * 13 3 2 15 15 C 1.38272 * 119.93958 * 270.29805 * 14 13 3 16 16 C 1.38138 * 120.05450 * 180.29903 * 15 14 13 17 17 C 1.38734 * 119.94108 * 359.42422 * 16 15 14 18 18 O 1.35901 * 120.05807 * 180.29893 * 17 16 15 19 19 C 1.42901 * 116.99865 * 4.32539 * 18 17 16 20 20 C 1.53002 * 109.47392 * 155.19321 * 19 18 17 21 21 C 1.53005 * 109.47239 * 275.19720 * 19 18 17 22 22 C 1.38730 * 119.88914 * 0.27835 * 17 16 15 23 23 C 1.38146 * 119.94803 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.47229 * 306.89160 * 1 2 3 25 25 H 1.08999 * 109.47294 * 66.89043 * 1 2 3 26 26 H 1.08994 * 109.46949 * 186.89257 * 1 2 3 27 27 H 1.09000 * 109.47030 * 240.00486 * 2 1 3 28 28 H 1.08998 * 109.46966 * 119.99827 * 2 1 3 29 29 H 1.09000 * 109.47632 * 279.65668 * 4 3 2 30 30 H 1.08999 * 109.47265 * 39.65796 * 4 3 2 31 31 H 0.96998 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47418 * 173.95540 * 13 3 2 33 33 H 1.09005 * 109.47574 * 53.95346 * 13 3 2 34 34 H 1.08004 * 119.97446 * 0.02562 * 15 14 13 35 35 H 1.08003 * 120.03469 * 179.69972 * 16 15 14 36 36 H 1.09005 * 109.46985 * 35.19315 * 19 18 17 37 37 H 1.08998 * 109.46744 * 59.99898 * 20 19 18 38 38 H 1.08996 * 109.47157 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47254 * 300.00375 * 20 19 18 40 40 H 1.08995 * 109.46954 * 59.99709 * 21 19 18 41 41 H 1.08994 * 109.46960 * 179.97438 * 21 19 18 42 42 H 1.09005 * 109.46802 * 299.99708 * 21 19 18 43 43 H 1.08008 * 120.03178 * 180.02562 * 22 17 16 44 44 H 1.07992 * 119.97511 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8057 2.0190 -1.3077 5 6 1.8386 3.5175 -1.1509 6 1 2.0576 3.9550 -0.1881 7 6 1.5889 4.3299 -2.2365 8 7 1.3224 3.7972 -3.4091 9 14 1.6290 6.1873 -2.0419 10 1 1.9491 6.5307 -0.6332 11 1 2.6667 6.7567 -2.9388 12 1 0.3025 6.7512 -2.3993 13 6 3.4354 1.4429 0.3877 14 6 3.5808 1.0111 1.8243 15 6 3.4975 1.9476 2.8382 16 6 3.6366 1.5554 4.1554 17 6 3.8482 0.2188 4.4612 18 8 3.9794 -0.1705 5.7566 19 6 3.7943 0.8326 6.7574 20 6 3.3657 0.1715 8.0690 21 6 5.1077 1.5874 6.9721 22 6 3.9253 -0.7197 3.4425 23 6 3.7907 -0.3216 2.1265 24 1 -0.3634 0.6169 0.8219 25 1 -0.3634 0.4033 -0.9452 26 1 -0.3633 -1.0202 0.1233 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5924 1.7084 -1.9952 30 1 0.8364 1.7164 -1.7040 31 1 1.1471 4.3688 -4.1729 32 1 3.8012 2.4636 0.2763 33 1 4.0149 0.7773 -0.2521 34 1 3.3278 2.9873 2.5998 35 1 3.5763 2.2879 4.9468 36 1 3.0226 1.5310 6.4335 37 1 4.1373 -0.5269 8.3929 38 1 3.2249 0.9366 8.8325 39 1 2.4300 -0.3662 7.9161 40 1 5.4130 2.0583 6.0377 41 1 4.9664 2.3528 7.7351 42 1 5.8794 0.8890 7.2961 43 1 4.0896 -1.7609 3.6780 44 1 3.8502 -1.0519 1.3331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -20.340404 kcal Electronic energy + Delta-G solvation = -21509.965640 eV Core-core repulsion = 18427.298367 eV Total energy + Delta-G solvation = -3082.667273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22151 -38.21682 -36.29519 -33.39422 -32.59647 -31.00062 -30.75858 -29.38963 -27.55858 -26.65602 -24.50922 -23.22249 -22.46857 -21.71096 -20.46071 -19.61825 -18.21964 -16.42729 -15.94990 -15.53576 -15.43077 -14.86511 -14.49826 -14.24777 -14.13349 -13.69008 -13.51187 -13.21609 -13.14148 -12.80129 -12.55077 -12.46082 -12.30665 -11.97718 -11.63757 -11.57457 -11.29228 -11.22077 -10.90663 -10.85875 -10.75667 -10.62614 -10.51105 -10.36080 -10.22089 -9.64640 -9.19630 -8.72953 -8.39944 -7.85318 -7.18589 -5.99806 -4.00594 1.56875 1.68657 3.17945 3.31985 3.39493 3.44042 3.98127 4.45244 4.55865 4.68617 4.84259 5.04578 5.06251 5.12388 5.26986 5.32241 5.35069 5.36182 5.46880 5.50862 5.62886 5.66163 5.75970 5.83724 5.88741 5.91386 5.96745 6.10298 6.17415 6.32951 6.36840 6.47732 6.55114 6.62269 6.65321 6.86474 6.99723 7.03289 7.29825 7.37840 7.55692 7.85951 8.16298 8.25539 8.58801 9.07371 9.63343 11.10812 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003915 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.562246 B = 7150.269783 C = 7969.995615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.190 3.810 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.101 3.899 14 C -0.096 4.096 15 C -0.058 4.058 16 C -0.211 4.211 17 C 0.118 3.882 18 O -0.315 6.315 19 C 0.076 3.924 20 C -0.148 4.148 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.079 4.079 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.020 0.980 28 H 0.063 0.937 29 H -0.011 1.011 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -7.584 18.327 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.027 4.027 14 C -0.096 4.096 15 C -0.076 4.076 16 C -0.229 4.229 17 C 0.073 3.927 18 O -0.230 6.230 19 C 0.020 3.980 20 C -0.205 4.205 21 C -0.237 4.237 22 C -0.175 4.175 23 C -0.098 4.098 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.007 0.993 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.060 -7.452 18.558 20.629 hybrid contribution 0.366 0.824 -0.671 1.124 sum 5.426 -6.628 17.887 19.832 Atomic orbital electron populations 1.21716 0.95659 0.99813 1.02690 1.22103 0.95971 0.91105 0.99169 1.62193 1.15087 1.14430 1.33705 1.19802 0.96443 0.94313 0.82918 1.21211 1.46688 0.90697 0.95401 0.91903 1.24991 0.95612 0.98872 0.95241 1.69969 1.48766 1.35090 1.00181 0.86475 0.77520 0.85522 0.78100 1.19699 1.21179 1.21092 1.20931 0.90596 1.01603 0.89586 1.19983 1.00265 0.92926 0.96467 1.20901 0.95530 1.00067 0.91144 1.21229 1.09158 0.94733 0.97820 1.18912 0.97438 0.92894 0.83438 1.86076 1.86330 1.37914 1.12673 1.22384 0.97663 0.90076 0.87902 1.21842 1.02319 1.01527 0.94792 1.22379 0.97752 1.00715 1.02879 1.20298 1.07499 0.98683 0.91016 1.20882 0.98086 0.95685 0.95147 0.92269 0.92444 0.93783 0.96213 0.91818 0.99308 0.94586 0.93056 0.89332 0.95456 0.85478 0.85798 0.90817 0.91631 0.90685 0.91682 0.91630 0.91202 0.91612 0.85860 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.87 37.16 0.37 -2.14 16 2 C 0.04 0.84 5.52 -3.82 -0.02 0.82 16 3 N -0.53 -11.43 4.36 -237.51 -1.04 -12.47 16 4 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 5 C -0.50 -13.99 8.62 -34.44 -0.30 -14.29 16 6 H 0.06 1.74 7.73 -52.49 -0.41 1.33 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.10 1.94 4.94 -4.97 -0.02 1.91 16 14 C -0.10 -1.59 4.94 -104.60 -0.52 -2.11 16 15 C -0.06 -0.92 9.69 -39.61 -0.38 -1.30 16 16 C -0.21 -2.94 8.25 -39.43 -0.33 -3.27 16 17 C 0.12 1.66 6.60 -39.22 -0.26 1.40 16 18 O -0.32 -4.05 9.80 -19.43 -0.19 -4.24 16 19 C 0.08 0.74 2.85 -26.73 -0.08 0.67 16 20 C -0.15 -1.12 9.56 37.16 0.36 -0.77 16 21 C -0.18 -1.54 9.18 37.16 0.34 -1.19 16 22 C -0.16 -2.18 9.99 -39.43 -0.39 -2.58 16 23 C -0.08 -1.17 7.84 -39.61 -0.31 -1.48 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.11 6.78 -51.93 -0.35 0.76 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 28 H 0.06 1.08 5.10 -51.93 -0.26 0.81 16 29 H -0.01 -0.30 7.99 -51.93 -0.41 -0.72 16 30 H 0.04 1.00 6.37 -51.93 -0.33 0.67 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.09 1.83 7.35 -51.93 -0.38 1.45 16 33 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 35 H 0.12 1.47 5.46 -52.48 -0.29 1.18 16 36 H 0.07 0.72 6.26 -51.93 -0.33 0.39 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.63 6.97 -51.93 -0.36 0.26 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.12 1.65 7.71 -52.49 -0.40 1.25 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -30.27 351.46 -9.18 -39.45 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.31 Total: -0.62 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.66 Total: -18.01 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.30 Total: -38.47 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.19 Total: -4.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.27 -9.18 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.114 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds